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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:435923..436935+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009456-T1 ID=KJC3_009456-T1|Name=KJC3_009456-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1013bp|location=Sequence derived from alignment at ch7:435923..436935+ (Aspergillus niger KJC3)
TGCCCCGTCTCATATTCTTGGTCTGTCGGGTAGACACTACGAGAGATAAT
CATTTCAGTCTACTTTGCAAGAATGCCTCAAGCCTACACAAACGATCATT
CTTCGTCGGTCCTCAAGACCCACTCCTGGCGTAATGTCGAGAATTCGGCA
GCTTATCTTCTCCCTTATCTGCAGTCGAGCATGAGCATTCTTGACGTTGG
CTGCGGCCCAGGCACTATCACCATCGATCTGGCACGGAAAGTTCCACACG
GGCACGTTGTGGGTGTGGAGTATGTGTCCGATCCACTAGATGGTGCACGA
TCGCTTGCCGCCTCTGAAGGAGTGACCAATGTCAGCTTCCAAGTAGGCGA
CATACACGATCTACCGTTTGCCGAGAATACTTTTGATGTTGTTCATGTAC
ACCAAGTTTTGCAGCACATTGCGGACCCAGTACAGGCATTTAAGGAGATG
CGGCGTGTGGTGAAGCCCGGGGGGATTGTGGCAGCACAGGAGTCTATTAC
GTCAACGATATACCCAGATTCGGAAGGCTTAACGGCCTGGCGGGATCTTC
AGATCCGTATTCGGCAAGCGAAAGGCAGCCATACAAAAGCGGGGAGCCGG
CTTCATGTTTGGGCGAAAGAGGCTGGTTTTCCTTTGGAGAGTTTGAAGAA
GAGCACCGGATCGTGGTGTTTCAGCAGTCCCGAGGAACGGAGATATTGGG
GCGGCGCCATGGAAGAAAGAGCCCGCTCGTCTGGTCTAGCAGTGACCGCC
ATTAAAGAAGAATTTGCTAGTCAAATGGATTTGGAGCGGATGGCAACGGC
GTGGAGAACCTGGGTGGAGGATGAGGATGGATGGCTCGGATTTTTACATG
GACAGATTCTTTGCTGGAAGTGATGTCGTCCTATCTTGCGAACCGTCGTG
CCTCGCCTTCGGAAATACCCTGATTTTAGGAGTTCATGCCCATCATAGCA
TCTTTAAAGTAACTATTAATATGTAAAAGAATCCTTGAGAAGAGTAATAA
CAATATATAAAGG back to topCoding sequence (CDS) from alignment at ch7:435923..436935+ >KJC3_009456-T1 ID=KJC3_009456-T1|Name=KJC3_009456-T1|organism=Aspergillus niger KJC3|type=CDS|length=801bp|location=Sequence derived from alignment at ch7:435923..436935+ (Aspergillus niger KJC3)
ATGCCTCAAGCCTACACAAACGATCATTCTTCGTCGGTCCTCAAGACCCA
CTCCTGGCGTAATGTCGAGAATTCGGCAGCTTATCTTCTCCCTTATCTGC
AGTCGAGCATGAGCATTCTTGACGTTGGCTGCGGCCCAGGCACTATCACC
ATCGATCTGGCACGGAAAGTTCCACACGGGCACGTTGTGGGTGTGGAGTA
TGTGTCCGATCCACTAGATGGTGCACGATCGCTTGCCGCCTCTGAAGGAG
TGACCAATGTCAGCTTCCAAGTAGGCGACATACACGATCTACCGTTTGCC
GAGAATACTTTTGATGTTGTTCATGTACACCAAGTTTTGCAGCACATTGC
GGACCCAGTACAGGCATTTAAGGAGATGCGGCGTGTGGTGAAGCCCGGGG
GGATTGTGGCAGCACAGGAGTCTATTACGTCAACGATATACCCAGATTCG
GAAGGCTTAACGGCCTGGCGGGATCTTCAGATCCGTATTCGGCAAGCGAA
AGGCAGCCATACAAAAGCGGGGAGCCGGCTTCATGTTTGGGCGAAAGAGG
CTGGTTTTCCTTTGGAGAGTTTGAAGAAGAGCACCGGATCGTGGTGTTTC
AGCAGTCCCGAGGAACGGAGATATTGGGGCGGCGCCATGGAAGAAAGAGC
CCGCTCGTCTGGTCTAGCAGTGACCGCCATTAAAGAAGAATTTGCTAGTC
AAATGGATTTGGAGCGGATGGCAACGGCGTGGAGAACCTGGGTGGAGGAT
GAGGATGGATGGCTCGGATTTTTACATGGACAGATTCTTTGCTGGAAGTG
A back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009456-T1.utr5p1 | KJC3_009456-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009456-T1.utr3p1 | KJC3_009456-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR029063 |
| DBxref | InterPro:IPR025714 |
| DBxref | PFAM:PF05175 |
| DBxref | PFAM:PF07021 |
| DBxref | PFAM:PF05891 |
| DBxref | PFAM:PF02390 |
| DBxref | PFAM:PF13847 |
| DBxref | PFAM:PF13649 |
| DBxref | PFAM:PF13489 |
| DBxref | PFAM:PF08242 |
| DBxref | PFAM:PF08241 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:435923..436935 + |
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