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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:442327..445744+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009459-T3 ID=KJC3_009459-T3|Name=KJC3_009459-T3|organism=Aspergillus niger KJC3|type=mRNA|length=3418bp|location=Sequence derived from alignment at ch7:442327..445744+ (Aspergillus niger KJC3)
GCCCGACCTGCACTCTGCTTACTTTTCTACTCTGAGGCTGATACATTGCG
AATACTTGCTTAATTCGCTTACTTCAAAACAGCGGCGGGTCCGAATCTAA
TTAATGTCGTCCACCTCTCCGACTGGGCCTCAGGGTCAGAATCGACCTAA
ACTCGCCTGTTCTCTCTGCGCTCGGCGTAAGGTGAAATGCGATAAGGGCG
AGCCGTGCTCTAACTGCCTCAAGGCGCATGCTCAGTGCTTATACGAGGCC
CCTGCTCCACCTCGACCACGGAAGAGGGCTGCTGATGAAGAGCTTCTCGC
ACGACTAGCTCGGTACGAGGAGCTCATGCGGAAGCACAATATCGATTTCT
CCTCATATGCCCACTGCTGGATCCCTTCGAACCAGAAGACTCAACCGAAG
GTGAGCCATCTGGCTGGCTTACGCACCGAAGTGGGCGGCGAAACTAGTGT
TCATTCTCAAGAAAGGCTCACTGAGAGCACGGATGCTGAAAGAGAACAGT
AAGGTTCCCGCGCGACTAAGAGACTTTCTGCAATATGTTACTAATGATTG
ACAGATGTTTGTGGTCAAATCTAAGGCCAGAGGTTGGTGTTTTCCGCTAC
TACCGTGATCATACGATACTAATGTCCCACTGCGAATAGCTCATGTACCC
CCCTATTCAGAGCCTCAGACACAAGGATGACCCCCTTCTCTATCCTACTC
CTTCCTTTGAAGAGGCTATCTCTGATACACAAAGTATCCATGACGTCCAT
CCCGAGCCAAAGCACATCTATCGGTTGTGGCAGATCTTTGTGGAAAGGGT
CCACCCAATGACAAAGATCGTTCATGTCCCTACCCTGCAGCAGCGTATCT
TAGATACTAGCTGCAATCCCTACTGCGCATCCAAGCAACTGACGGCTATA
ATTTTTGCCATCTATACCATTTCAACCACCTCTATCTCCGCGGGAGACTG
TGAAACTTATTTTGGCCTGGGAAAGGCCCTTCTTTTGAGACAATACCGAA
CCGCAACTCTGCGTGCTCTTATTGCAGCAGACTTCCTCACAACTAGTGAC
CTCGAAGTTTTACAAGCACTGGTATTGTTTCTCTTCTCTAACCCAGGATG
TGATTTAGCAACCACCCTGTCCGGCGCCGCGCTCCGACTAGCCGAGAAGA
TGGGTTTGCATCAAGACACATCTGACCCCAACATATCTTTCTTTGAAAAG
GAGATGCGCATTCGTCTATGGTGGCAGCTCTGCGGTCTCAGCGCTCGGTG
TCGCATTAGCTCTACCCCAGGAATGAAGAAGCCACCACCCACTTCCGAGA
TAGGCGACGTCCGCCTCCCACTCAACGTGAACGACGTGGATCTGCATCCG
GACATGACTGAGCCTCCTCTGGAACACAACGGTCCCACAGAGATGATGTG
TGTCCTGTTGAAAATGGAAGCCTCCAACTGGCGCCGACATTTTCCGACAG
CCACCAAGCTCTTTGAAAGTGTGATGCAGGGCTCGATCAGGTCCAAGGAG
GTAATCGAACTGGAGTGCAAGGCGGTTGACGAGCTCAACGACATATACTG
TCGGAAATACTTTCATAATTCTGATCCACACATCCCACTTCATAGCCTTA
CTCATGCTATTGCGAAACTCTCAATCGCGCGCTTCAGGTTCAAAATTCGT
CATCCTCAAGGGCGGCTCACCGCAGCTGACAACAATGCCTTTTTTACACG
TGAGGAAAGTGATATCCTATTCGAATCATGTCTGACCTGGGTGCAATCCA
TGATGGATATCAGGTTACGCAGCAAGTTCCCGTATTATTTATTCACGCAC
CTCACGACAGACTCTTACATGGATGTTTATATCTACCTCCTGAGTGAGCT
GCGGCGACGATGCTCAGGGGACCGCGTAGCACTTGCTTGGCAACTGGTCG
AAGAACTTTTCAATGAACATCCTGAGCTTATTGATGGTGACGACGATTTC
TATGCTGCATTTGGGGACTTGGTCTTGGATGCATGGGAACATCACAGTCA
CGAGCTGAAAAAAGGCCCGGGAGGTCTAGGATTCGTCACCAAGCCACGAT
TTATTGAACGACTCTATCAGGAAAAGTCTACAAGCGGTCGACCTCGTTAT
AGTAATCTGCCTTCTTTCTCGGATTCACGTGAACTTGGTGGGCTTGAACT
GCAAGATGAAAATGATAGCAATTGGCTGTATTGGGAGGAGTTTCTTCGGT
TATAGGCAGGAATGTGCGGTGCGGTAAGAAATATTGATCAATAAATTTGA
AACTAATGAATAGTCTAACGTCAACAATCTCATACATCGGAAGGTGTAGG
TTCATAGTTCTTTCAGTGCGTCTAATGTACATCTTGGTAACATACGGAAG
ATGACCCGAAGGAAAACTATGATAGAATGCATTTTCTATTCGACCCCCAC
TTCTAGCAGGCTACCAAGACCATTCTGAGGTAAACACAAAATAGTGGCCG
AACTAGCTTCGGTGAAATCAAAATAAATACTCAATCAACACACAACCAAA
CAGCCCCTTCAGTGAAAGGAGCTCTGCCAATAAAAGCAAACAGAAAACAC
AGATTTATCGCCAACAAAACATCGAGCTTGACCCTTCGTGGGACCCCCGA
GCCTCTCTATCCTCATACAAGACTTTCCAGTCTATGTAATGCTAACAATA
GGCAAAGACTGACGATGGACCGATTGCGGAGTAGTCAAGTTGCCAAACTC
TACCGCGAGATCTCTCTTGATGTCCGAAACTTGGACGGCACAATGTGACT
CGGCAACACGAATGGGGCATCCAACTCACTCTTCCCCAGGATGCTCGTAA
TCAAGAGCAGACTCTAAGCTGTCCAAACATCTATTATAAACGCGGGGGAA
TTACTCCACTATCTTTGCACGCTTGGCAGCATTCGTCGGCTGCTGTCCAC
ATTCCACCCATTTCCGCCTGCGCCTAGCTTCCTGTGCCGCAGAAATACTA
GGACGTTTGCCAAAACAATTATCATTTGCGACCTTCTCGCAATACTTAAC
GTGGCTTTCAATAAAGTTCCCGACCTGTCCAGGGCGAGGAGTGAGTATGT
TGATAGATTCATGTGGGCTATTTGAAACCAGAAGAACGCGACGAGCATGG
CTAGCTTTCCAGTTCACCTGCTTGCCAAGGTGTAGAAGGACATGGTAGAC
AATCCCCTTCTGCGTATACTCCTGACAACATCCATAGAACCTATCGGAAG
CGAGAGAATTTTGCTTTAACATTGCTCGAAGCCCTTCCACAAAATCAACT
TCATGCTCCAACGGACACTCCGTGTAGGTAAGAAAGATCCATCGGCGATG
TATCTTCTTGTTCCAAGGCGCCAATGTTTTAGGAGAGGGCCCGACCGTCA
CAACAGAGGACGGCTGAGAAACCTCAGCGGATAATTCCACATGGAAGCGA
TGGAAAGTCATTGTTATG back to topCoding sequence (CDS) from alignment at ch7:442327..445744+ >KJC3_009459-T3 ID=KJC3_009459-T3|Name=KJC3_009459-T3|organism=Aspergillus niger KJC3|type=CDS|length=6252bp|location=Sequence derived from alignment at ch7:442327..445744+ (Aspergillus niger KJC3)
ATGTCGTCCACCTCTCCGACTGGGCCTCAGGGTCAGAATCGACCTAAACT
CGCCTGTTCTCTCTGCGCTCGGCGTAAGGTGAAATGCGATAAGGGCGAGC
CGTGCTCTAACTGCCTCAAGGCGCATGCTCAGTGCTTATACGAGGCCCCT
GCTCCACCTCGACCACGGAAGAGGGCTGCTGATGAAGAGCTTCTCGCACG
ACTAGCTCGGTACGAGGAGCTCATGCGGAAGCACAATATCGATTTCTCCT
CATATGCCCACTGCTGGATCCCTTCGAACCAGAAGACTCAACCGAAGGTG
AGCCATCTGGCTGGCTTACGCACCGAAGTGGGCGGCGAAACTAGTGTTCA
TTCTCAAGAAAGGCTCACTGAGAGCACGGATGCTGAAAGAGAACAATGTT
TGTGGTCAAATCTAAGGCCAGAGCTCATGTACCCCCCTATTCAGAGCCTC
AGACACAAGGATGACCCCCTTCTCTATCCTACTCCTTCCTTTGAAGAGGC
TATCTCTGATACACAAAGTATCCATGACGTCCATCCCGAGCCAAAGCACA
TCTATCGGTTGTGGCAGATCTTTGTGGAAAGGGTCCACCCAATGACAAAG
ATCGTTCATGTCCCTACCCTGCAGCAGCGTATCTTAGATACTAGCTGCAA
TCCCTACTGCGCATCCAAGCAACTGACGGCTATAATTTTTGCCATCTATA
CCATTTCAACCACCTCTATCTCCGCGGGAGACTGTGAAACTTATTTTGGC
CTGGGAAAGGCCCTTCTTTTGAGACAATACCGAACCGCAACTCTGCGTGC
TCTTATTGCAGCAGACTTCCTCACAACTAGTGACCTCGAAGTTTTACAAG
CACTGGTATTGTTTCTCTTCTCTAACCCAGGATGTGATTTAGCAACCACC
CTGTCCGGCGCCGCGCTCCGACTAGCCGAGAAGATGGGTTTGCATCAAGA
CACATCTGACCCCAACATATCTTTCTTTGAAAAGGAGATGCGCATTCGTC
TATGGTGGCAGCTCTGCGGTCTCAGCGCTCGGTGTCGCATTAGCTCTACC
CCAGGAATGAAGAAGCCACCACCCACTTCCGAGATAGGCGACGTCCGCCT
CCCACTCAACGTGAACGACGTGGATCTGCATCCGGACATGACTGAGCCTC
CTCTGGAACACAACGGTCCCACAGAGATGATGTGTGTCCTGTTGAAAATG
GAAGCCTCCAACTGGCGCCGACATTTTCCGACAGCCACCAAGCTCTTTGA
AAGTGTGATGCAGGGCTCGATCAGGTCCAAGGAGGTAATCGAACTGGAGT
GCAAGGCGGTTGACGAGCTCAACGACATATACTGTCGGAAATACTTTCAT
AATTCTGATCCACACATCCCACTTCATAGCCTTACTCATGCTATTGCGAA
ACTCTCAATCGCGCGCTTCAGGTTCAAAATTCGTCATCCTCAAGGGCGGC
TCACCGCAGCTGACAACAATGCCTTTTTTACACGTTACGCAGCAAGTTCC
CGTATTATTTATTCACGCACCTCACGACAGACTCTTACATGGATGTTTAT
ATCTACCTCCTGAATGTCGTCCACCTCTCCGACTGGGCCTCAGGGTCAGA
ATCGACCTAAACTCGCCTGTTCTCTCTGCGCTCGGCGTAAGGTGAAATGC
GATAAGGGCGAGCCGTGCTCTAACTGCCTCAAGGCGCATGCTCAGTGCTT
ATACGAGGCCCCTGCTCCACCTCGACCACGGAAGAGGGCTGCTGATGAAG
AGCTTCTCGCACGACTAGCTCGGTACGAGGAGCTCATGCGGAAGCACAAT
ATCGATTTCTCCTCATATGCCCACTGCTGGATCCCTTCGAACCAGAAGAC
TCAACCGAAGGTGAGCCATCTGGCTGGCTTACGCACCGAAGTGGGCGGCG
AAACTAGTGTTCATTCTCAAGAAAGGCTCACTGAGAGCACGGATGCTGAA
AGAGAACAATGTTTGTGGTCAAATCTAAGGCCAGAGCTCATGTACCCCCC
TATTCAGAGCCTCAGACACAAGGATGACCCCCTTCTCTATCCTACTCCTT
CCTTTGAAGAGGCTATCTCTGATACACAAAGTATCCATGACGTCCATCCC
GAGCCAAAGCACATCTATCGGTTGTGGCAGATCTTTGTGGAAAGGGTCCA
CCCAATGACAAAGATCGTTCATGTCCCTACCCTGCAGCAGCGTATCTTAG
ATACTAGCTGCAATCCCTACTGCGCATCCAAGCAACTGACGGCTATAATT
TTTGCCATCTATACCATTTCAACCACCTCTATCTCCGCGGGAGACTGTGA
AACTTATTTTGGCCTGGGAAAGGCCCTTCTTTTGAGACAATACCGAACCG
CAACTCTGCGTGCTCTTATTGCAGCAGACTTCCTCACAACTAGTGACCTC
GAAGTTTTACAAGCACTGGTATTGTTTCTCTTCTCTAACCCAGGATGTGA
TTTAGCAACCACCCTGTCCGGCGCCGCGCTCCGACTAGCCGAGAAGATGG
GTTTGCATCAAGACACATCTGACCCCAACATATCTTTCTTTGAAAAGGAG
ATGCGCATTCGTCTATGGTGGCAGCTCTGCGGTCTCAGCGCTCGGTGTCG
CATTAGCTCTACCCCAGGAATGAAGAAGCCACCACCCACTTCCGAGATAG
GCGACGTCCGCCTCCCACTCAACGTGAACGACGTGGATCTGCATCCGGAC
ATGACTGAGCCTCCTCTGGAACACAACGGTCCCACAGAGATGATGTGTGT
CCTGTTGAAAATGGAAGCCTCCAACTGGCGCCGACATTTTCCGACAGCCA
CCAAGCTCTTTGAAAGTGTGATGCAGGGCTCGATCAGGTCCAAGGAGGTA
ATCGAACTGGAGTGCAAGGCGGTTGACGAGCTCAACGACATATACTGTCG
GAAATACTTTCATAATTCTGATCCACACATCCCACTTCATAGCCTTACTC
ATGCTATTGCGAAACTCTCAATCGCGCGCTTCAGGTTCAAAATTCGTCAT
CCTCAAGGGCGGCTCACCGCAGCTGACAACAATGCCTTTTTTACACGTTA
CGCAGCAAGTTCCCGTATTATTTATTCACGCACCTCACGACAGACTCTTA
CATGGATGTTTATATCTACCTCCTGAATGTCGTCCACCTCTCCGACTGGG
CCTCAGGGTCAGAATCGACCTAAACTCGCCTGTTCTCTCTGCGCTCGGCG
TAAGGTGAAATGCGATAAGGGCGAGCCGTGCTCTAACTGCCTCAAGGCGC
ATGCTCAGTGCTTATACGAGGCCCCTGCTCCACCTCGACCACGGAAGAGG
GCTGCTGATGAAGAGCTTCTCGCACGACTAGCTCGGTACGAGGAGCTCAT
GCGGAAGCACAATATCGATTTCTCCTCATATGCCCACTGCTGGATCCCTT
CGAACCAGAAGACTCAACCGAAGGTGAGCCATCTGGCTGGCTTACGCACC
GAAGTGGGCGGCGAAACTAGTGTTCATTCTCAAGAAAGGCTCACTGAGAG
CACGGATGCTGAAAGAGAACAATGTTTGTGGTCAAATCTAAGGCCAGAGC
TCATGTACCCCCCTATTCAGAGCCTCAGACACAAGGATGACCCCCTTCTC
TATCCTACTCCTTCCTTTGAAGAGGCTATCTCTGATACACAAAGTATCCA
TGACGTCCATCCCGAGCCAAAGCACATCTATCGGTTGTGGCAGATCTTTG
TGGAAAGGGTCCACCCAATGACAAAGATCGTTCATGTCCCTACCCTGCAG
CAGCGTATCTTAGATACTAGCTGCAATCCCTACTGCGCATCCAAGCAACT
GACGGCTATAATTTTTGCCATCTATACCATTTCAACCACCTCTATCTCCG
CGGGAGACTGTGAAACTTATTTTGGCCTGGGAAAGGCCCTTCTTTTGAGA
CAATACCGAACCGCAACTCTGCGTGCTCTTATTGCAGCAGACTTCCTCAC
AACTAGTGACCTCGAAGTTTTACAAGCACTGGTATTGTTTCTCTTCTCTA
ACCCAGGATGTGATTTAGCAACCACCCTGTCCGGCGCCGCGCTCCGACTA
GCCGAGAAGATGGGTTTGCATCAAGACACATCTGACCCCAACATATCTTT
CTTTGAAAAGGAGATGCGCATTCGTCTATGGTGGCAGCTCTGCGGTCTCA
GCGCTCGGTGTCGCATTAGCTCTACCCCAGGAATGAAGAAGCCACCACCC
ACTTCCGAGATAGGCGACGTCCGCCTCCCACTCAACGTGAACGACGTGGA
TCTGCATCCGGACATGACTGAGCCTCCTCTGGAACACAACGGTCCCACAG
AGATGATGTGTGTCCTGTTGAAAATGGAAGCCTCCAACTGGCGCCGACAT
TTTCCGACAGCCACCAAGCTCTTTGAAAGTGTGATGCAGGGCTCGATCAG
GTCCAAGGAGGTAATCGAACTGGAGTGCAAGGCGGTTGACGAGCTCAACG
ACATATACTGTCGGAAATACTTTCATAATTCTGATCCACACATCCCACTT
CATAGCCTTACTCATGCTATTGCGAAACTCTCAATCGCGCGCTTCAGGTT
CAAAATTCGTCATCCTCAAGGGCGGCTCACCGCAGCTGACAACAATGCCT
TTTTTACACGTTACGCAGCAAGTTCCCGTATTATTTATTCACGCACCTCA
CGACAGACTCTTACATGGATGTTTATATCTACCTCCTGAATGTCGTCCAC
CTCTCCGACTGGGCCTCAGGGTCAGAATCGACCTAAACTCGCCTGTTCTC
TCTGCGCTCGGCGTAAGGTGAAATGCGATAAGGGCGAGCCGTGCTCTAAC
TGCCTCAAGGCGCATGCTCAGTGCTTATACGAGGCCCCTGCTCCACCTCG
ACCACGGAAGAGGGCTGCTGATGAAGAGCTTCTCGCACGACTAGCTCGGT
ACGAGGAGCTCATGCGGAAGCACAATATCGATTTCTCCTCATATGCCCAC
TGCTGGATCCCTTCGAACCAGAAGACTCAACCGAAGGTGAGCCATCTGGC
TGGCTTACGCACCGAAGTGGGCGGCGAAACTAGTGTTCATTCTCAAGAAA
GGCTCACTGAGAGCACGGATGCTGAAAGAGAACAATGTTTGTGGTCAAAT
CTAAGGCCAGAGCTCATGTACCCCCCTATTCAGAGCCTCAGACACAAGGA
TGACCCCCTTCTCTATCCTACTCCTTCCTTTGAAGAGGCTATCTCTGATA
CACAAAGTATCCATGACGTCCATCCCGAGCCAAAGCACATCTATCGGTTG
TGGCAGATCTTTGTGGAAAGGGTCCACCCAATGACAAAGATCGTTCATGT
CCCTACCCTGCAGCAGCGTATCTTAGATACTAGCTGCAATCCCTACTGCG
CATCCAAGCAACTGACGGCTATAATTTTTGCCATCTATACCATTTCAACC
ACCTCTATCTCCGCGGGAGACTGTGAAACTTATTTTGGCCTGGGAAAGGC
CCTTCTTTTGAGACAATACCGAACCGCAACTCTGCGTGCTCTTATTGCAG
CAGACTTCCTCACAACTAGTGACCTCGAAGTTTTACAAGCACTGGTATTG
TTTCTCTTCTCTAACCCAGGATGTGATTTAGCAACCACCCTGTCCGGCGC
CGCGCTCCGACTAGCCGAGAAGATGGGTTTGCATCAAGACACATCTGACC
CCAACATATCTTTCTTTGAAAAGGAGATGCGCATTCGTCTATGGTGGCAG
CTCTGCGGTCTCAGCGCTCGGTGTCGCATTAGCTCTACCCCAGGAATGAA
GAAGCCACCACCCACTTCCGAGATAGGCGACGTCCGCCTCCCACTCAACG
TGAACGACGTGGATCTGCATCCGGACATGACTGAGCCTCCTCTGGAACAC
AACGGTCCCACAGAGATGATGTGTGTCCTGTTGAAAATGGAAGCCTCCAA
CTGGCGCCGACATTTTCCGACAGCCACCAAGCTCTTTGAAAGTGTGATGC
AGGGCTCGATCAGGTCCAAGGAGGTAATCGAACTGGAGTGCAAGGCGGTT
GACGAGCTCAACGACATATACTGTCGGAAATACTTTCATAATTCTGATCC
ACACATCCCACTTCATAGCCTTACTCATGCTATTGCGAAACTCTCAATCG
CGCGCTTCAGGTTCAAAATTCGTCATCCTCAAGGGCGGCTCACCGCAGCT
GACAACAATGCCTTTTTTACACGTTACGCAGCAAGTTCCCGTATTATTTA
TTCACGCACCTCACGACAGACTCTTACATGGATGTTTATATCTACCTCCT
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006351 | transcription, DNA-templated |
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009459-T3.utr5p1 | KJC3_009459-T3.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009459-T3.utr3p1 | KJC3_009459-T3.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR007219 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF04082 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:442327..445744 + |
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