You are here

Home

KJC3_009544-T1, KJC3_009544-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_009544-T1
Unique NameKJC3_009544-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch7:723704..725128-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_009544-T1 ID=KJC3_009544-T1|Name=KJC3_009544-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1425bp|location=Sequence derived from alignment at ch7:723704..725128- (Aspergillus niger KJC3)
CCCCAAATCCTTTCCATCAGCCACCCGCTTGTGTTCTATAAAAGAAGGAC
GTTTCTCGTTGTCCAATATTCCTCTTCTTTGGCAGGGCCAAGATATTTGG
TTTTCCTGTCAGATACTCTAAATGGTTGCCAAGCAGAAAGTACTGCTCCT
TGGAGCGACTGGTGAGACTGGCAGCTCTATTCTAAATGGGTTGCAAGAAT
CTGGCAATTTTGTAAGTTAGATCGACTTTACCACAAATTCTCATCCGGTT
GCTGACAAGTACTAATTCTAATTTTGGTTTAGGATGTGGAGGTCTTAGTA
CGACCCGCTTCTGCAAATAAATCGTCGGTCCAAAAGCTCCGAGAGCAAGG
GCTCAAGATTTGGTCCACAGACCTTGACGACTTTAGCGGGCTTGTGTCTG
CTATGACCGGTACCGACATTCTCATCAGTGCTATCGGACCCAATGACTTG
CTTCAGCAGAAGAAGCTACTTCAAGCCGCCAAGCTTACAGGTGTGAAAAG
AGTCATTCCCTGTGCTTTCACCACGGTAGCCCCTCCAAATGGCGCTATGC
TGCTTCGTGATGAGGTATGAATACCATGATTCAAAGGAAATACCAAGTTA
ATTAACTCCAAATAGAAAGAAGAAGTCTACAATGCCATCAAGTTCTTGGG
TATTCCTTATACCGTGATCGATGTTGGCTTCTGGTATCAAATCTCATTTC
CGACCCTTCCGTCTGGGAAAGTGGATTACGCCCAGATGGTTCCAGTGAAG
ACTGTTCATGGGGACGGGACAGCTCCCAATATCCTTACCGACCTACGTGA
TATCGGGAGATTTGTTGCACGAATCATACTCGATGACCGGACTATTAACA
AATATGTCTACACGTTAGGGGATGTACTTTCCGAGAACGACATCTATCGT
ATCGCGAAAGAGGTTTCTGGAGAGAAGCTGGAACCAGATCGTGTAAGTCA
AATCTATCTTGAGTGTTTTAGTATTTACTAAAAGCAAGTTTCTAGATATC
GCATGAAAATATCGAAGCCAATGTAGAGCAAGCTAAAGCTGCTCTCGCCG
AGGATCCTAGCGATCCCATGAAGCGCATCGGCGTTTTCATAGCCCAGTAT
GAGCATAGCAAGTACGTGCGGGAGGATAACAGTCCTGGCTATGCCGCCTA
TCTGGGTTATCTTAATGCCAGAGAGCTATACCCAGATTTCCAGCCAACAT
CCTTTCGTGATTTCTTCGCGGAGGTGCTGGCTGGGAAGGGCAGGAAAGTG
TATTCCTAGCTTTTTAGTCGGCCATGAAATTGGCCTGACTTTCTGACACG
CTATGATGGTGATTTGACCCTGCCGTCAAGGGCCTAACACGAGTGACTAT
TGGGCTATTTTCAATACCATCCATAGTACTAGACTAGAAGTATCCCAAGT
ATGTAATTTTATTGATAAAGGCGAC
back to top

Coding sequence (CDS) from alignment at ch7:723704..725128-

>KJC3_009544-T1 ID=KJC3_009544-T1|Name=KJC3_009544-T1|organism=Aspergillus niger KJC3|type=CDS|length=3852bp|location=Sequence derived from alignment at ch7:723704..725128- (Aspergillus niger KJC3)
ATATCGCATGAAAATATCGAAGCCAATGTAGAGCAAGCTAAAGCTGCTCT
CGCCGAGGATCCTAGCGATCCCATGAAGCGCATCGGCGTTTTCATAGCCC
AGTATGAGCATAGCAAGTACGTGCGGGAGGATAACAGTCCTGGCTATGCC
GCCTATCTGGGTTATCTTAATGCCAGAGAGCTATACCCAGATTTCCAGCC
AACATCCTTTCGTGATTTCTTCGCGGAGGTGCTGGCTGGGAAGGGCAGGA
AAGTGTATTCCTAGAAAGAAGAAGTCTACAATGCCATCAAGTTCTTGGGT
ATTCCTTATACCGTGATCGATGTTGGCTTCTGGTATCAAATCTCATTTCC
GACCCTTCCGTCTGGGAAAGTGGATTACGCCCAGATGGTTCCAGTGAAGA
CTGTTCATGGGGACGGGACAGCTCCCAATATCCTTACCGACCTACGTGAT
ATCGGGAGATTTGTTGCACGAATCATACTCGATGACCGGACTATTAACAA
ATATGTCTACACGTTAGGGGATGTACTTTCCGAGAACGACATCTATCGTA
TCGCGAAAGAGGTTTCTGGAGAGAAGCTGGAACCAGATCGTGATGTGGAG
GTCTTAGTACGACCCGCTTCTGCAAATAAATCGTCGGTCCAAAAGCTCCG
AGAGCAAGGGCTCAAGATTTGGTCCACAGACCTTGACGACTTTAGCGGGC
TTGTGTCTGCTATGACCGGTACCGACATTCTCATCAGTGCTATCGGACCC
AATGACTTGCTTCAGCAGAAGAAGCTACTTCAAGCCGCCAAGCTTACAGG
TGTGAAAAGAGTCATTCCCTGTGCTTTCACCACGGTAGCCCCTCCAAATG
GCGCTATGCTGCTTCGTGATGAGATGGTTGCCAAGCAGAAAGTACTGCTC
CTTGGAGCGACTGGTGAGACTGGCAGCTCTATTCTAAATGGGTTGCAAGA
ATCTGGCAATTTTATATCGCATGAAAATATCGAAGCCAATGTAGAGCAAG
CTAAAGCTGCTCTCGCCGAGGATCCTAGCGATCCCATGAAGCGCATCGGC
GTTTTCATAGCCCAGTATGAGCATAGCAAGTACGTGCGGGAGGATAACAG
TCCTGGCTATGCCGCCTATCTGGGTTATCTTAATGCCAGAGAGCTATACC
CAGATTTCCAGCCAACATCCTTTCGTGATTTCTTCGCGGAGGTGCTGGCT
GGGAAGGGCAGGAAAGTGTATTCCTAGAAAGAAGAAGTCTACAATGCCAT
CAAGTTCTTGGGTATTCCTTATACCGTGATCGATGTTGGCTTCTGGTATC
AAATCTCATTTCCGACCCTTCCGTCTGGGAAAGTGGATTACGCCCAGATG
GTTCCAGTGAAGACTGTTCATGGGGACGGGACAGCTCCCAATATCCTTAC
CGACCTACGTGATATCGGGAGATTTGTTGCACGAATCATACTCGATGACC
GGACTATTAACAAATATGTCTACACGTTAGGGGATGTACTTTCCGAGAAC
GACATCTATCGTATCGCGAAAGAGGTTTCTGGAGAGAAGCTGGAACCAGA
TCGTGATGTGGAGGTCTTAGTACGACCCGCTTCTGCAAATAAATCGTCGG
TCCAAAAGCTCCGAGAGCAAGGGCTCAAGATTTGGTCCACAGACCTTGAC
GACTTTAGCGGGCTTGTGTCTGCTATGACCGGTACCGACATTCTCATCAG
TGCTATCGGACCCAATGACTTGCTTCAGCAGAAGAAGCTACTTCAAGCCG
CCAAGCTTACAGGTGTGAAAAGAGTCATTCCCTGTGCTTTCACCACGGTA
GCCCCTCCAAATGGCGCTATGCTGCTTCGTGATGAGATGGTTGCCAAGCA
GAAAGTACTGCTCCTTGGAGCGACTGGTGAGACTGGCAGCTCTATTCTAA
ATGGGTTGCAAGAATCTGGCAATTTTATATCGCATGAAAATATCGAAGCC
AATGTAGAGCAAGCTAAAGCTGCTCTCGCCGAGGATCCTAGCGATCCCAT
GAAGCGCATCGGCGTTTTCATAGCCCAGTATGAGCATAGCAAGTACGTGC
GGGAGGATAACAGTCCTGGCTATGCCGCCTATCTGGGTTATCTTAATGCC
AGAGAGCTATACCCAGATTTCCAGCCAACATCCTTTCGTGATTTCTTCGC
GGAGGTGCTGGCTGGGAAGGGCAGGAAAGTGTATTCCTAGAAAGAAGAAG
TCTACAATGCCATCAAGTTCTTGGGTATTCCTTATACCGTGATCGATGTT
GGCTTCTGGTATCAAATCTCATTTCCGACCCTTCCGTCTGGGAAAGTGGA
TTACGCCCAGATGGTTCCAGTGAAGACTGTTCATGGGGACGGGACAGCTC
CCAATATCCTTACCGACCTACGTGATATCGGGAGATTTGTTGCACGAATC
ATACTCGATGACCGGACTATTAACAAATATGTCTACACGTTAGGGGATGT
ACTTTCCGAGAACGACATCTATCGTATCGCGAAAGAGGTTTCTGGAGAGA
AGCTGGAACCAGATCGTGATGTGGAGGTCTTAGTACGACCCGCTTCTGCA
AATAAATCGTCGGTCCAAAAGCTCCGAGAGCAAGGGCTCAAGATTTGGTC
CACAGACCTTGACGACTTTAGCGGGCTTGTGTCTGCTATGACCGGTACCG
ACATTCTCATCAGTGCTATCGGACCCAATGACTTGCTTCAGCAGAAGAAG
CTACTTCAAGCCGCCAAGCTTACAGGTGTGAAAAGAGTCATTCCCTGTGC
TTTCACCACGGTAGCCCCTCCAAATGGCGCTATGCTGCTTCGTGATGAGA
TGGTTGCCAAGCAGAAAGTACTGCTCCTTGGAGCGACTGGTGAGACTGGC
AGCTCTATTCTAAATGGGTTGCAAGAATCTGGCAATTTTATATCGCATGA
AAATATCGAAGCCAATGTAGAGCAAGCTAAAGCTGCTCTCGCCGAGGATC
CTAGCGATCCCATGAAGCGCATCGGCGTTTTCATAGCCCAGTATGAGCAT
AGCAAGTACGTGCGGGAGGATAACAGTCCTGGCTATGCCGCCTATCTGGG
TTATCTTAATGCCAGAGAGCTATACCCAGATTTCCAGCCAACATCCTTTC
GTGATTTCTTCGCGGAGGTGCTGGCTGGGAAGGGCAGGAAAGTGTATTCC
TAGAAAGAAGAAGTCTACAATGCCATCAAGTTCTTGGGTATTCCTTATAC
CGTGATCGATGTTGGCTTCTGGTATCAAATCTCATTTCCGACCCTTCCGT
CTGGGAAAGTGGATTACGCCCAGATGGTTCCAGTGAAGACTGTTCATGGG
GACGGGACAGCTCCCAATATCCTTACCGACCTACGTGATATCGGGAGATT
TGTTGCACGAATCATACTCGATGACCGGACTATTAACAAATATGTCTACA
CGTTAGGGGATGTACTTTCCGAGAACGACATCTATCGTATCGCGAAAGAG
GTTTCTGGAGAGAAGCTGGAACCAGATCGTGATGTGGAGGTCTTAGTACG
ACCCGCTTCTGCAAATAAATCGTCGGTCCAAAAGCTCCGAGAGCAAGGGC
TCAAGATTTGGTCCACAGACCTTGACGACTTTAGCGGGCTTGTGTCTGCT
ATGACCGGTACCGACATTCTCATCAGTGCTATCGGACCCAATGACTTGCT
TCAGCAGAAGAAGCTACTTCAAGCCGCCAAGCTTACAGGTGTGAAAAGAG
TCATTCCCTGTGCTTTCACCACGGTAGCCCCTCCAAATGGCGCTATGCTG
CTTCGTGATGAGATGGTTGCCAAGCAGAAAGTACTGCTCCTTGGAGCGAC
TGGTGAGACTGGCAGCTCTATTCTAAATGGGTTGCAAGAATCTGGCAATT
TT
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_009544KJC3_009544Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009544-T1KJC3_009544-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009544-T1.cdsKJC3_009544-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009544-T1.utr3p1KJC3_009544-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009544-T1.exon4KJC3_009544-T1.exon4Aspergillus niger KJC3exon
KJC3_009544-T1.exon3KJC3_009544-T1.exon3Aspergillus niger KJC3exon
KJC3_009544-T1.exon2KJC3_009544-T1.exon2Aspergillus niger KJC3exon
KJC3_009544-T1.exon1KJC3_009544-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009544-T1.utr5p1KJC3_009544-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036291
DBxrefInterPro:IPR008030
DBxrefPFAM:PF03435
DBxrefPFAM:PF05368
DBxrefPFAM:PF13460
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch7supercontigch7:723704..725128 -
Powered by Drupal