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KJC3_009636-T1, KJC3_009636-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_009636-T1
Unique NameKJC3_009636-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch7:969310..970336-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_009636-T1 ID=KJC3_009636-T1|Name=KJC3_009636-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1027bp|location=Sequence derived from alignment at ch7:969310..970336- (Aspergillus niger KJC3)
ATGGCTGACGCTCCCCGTGGACGTGGAGGATTCGGCTCTCGCGGTGACCG
TGGTGGTGACCGTGGCCGTGGCCGTGGTCGCCGTGGTCGTCGCGGTGGTG
CCAAGGAGCAGGAGAAGGAATGGCAGCCCGTCACCAAGCTCGGCCGTCTC
GTCAAGGCTGGCAAGATCACCAGCATGGAGCAGATCTACCTGCACTCCCT
GCCCGTGAAGGAGTACCAGATTGTGGACTTCTTCCTCCCCAAGCTGAAGG
ATGAGGTCATGAAGGTACGAACCGATCGCCCGATTACCGAATTGTCGACA
AGGAAGATCTACGATTGTGCGCGGGAAATAGGATTGAATGCGCGGGTGGA
ATTGATACGTGGATCGGAATTGCAGACATGATGGGATCAAAAAGGATATA
TCGAAAAAAAAAAATGGGAGGTGCTGACGGCTGGAAAATTTAGATCAAAC
CCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCCGTC
GTCGTCATCGGTGACTCCGAGGGTCACATCGGTCTCGGTATCAAGACCTC
CAAGGAAGTCGCTACCGCTATCCGTGCTGCCATCACCATCGCCAAGCTCA
GCGTTCTCCCCGTCCGTAGAGGTTACTGGGGTACCAACCTTGGTGAGCCT
CACTCTCTGCCCGTTAAGCAGAGCGCCAAGTGTGGTTCCGTCTCCGTCAG
AGTATGTCGCGACTCTTTCGATCCTCGATTTCGCTTTTCCGTCCGGCCAA
TATGCTAACCCGGTTATAGCTTATCCCCGCTCCCCGTGGTACCGGTCTCG
TTGCCTCCCCCGCTGTCAAGCGTCTGCTCCAGCTTGCCGGTGTCCAGGAC
GCCTACACCTGCTCTTCCGGTTCCACCAAGACCCTCGAGAACACTCTCAA
GGCTACTTTCCTTGCCGTCGTCAACACCTACGGCTTCCTCACCCCCAACC
TCTGGAAGGAGACTAAGCTCATCCGCAGCCCTCTGGAGGAGTTCGGTGAT
GTCCTGCGTCAGGGCAAGAAGTACTAG
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Coding sequence (CDS) from alignment at ch7:969310..970336-

>KJC3_009636-T1 ID=KJC3_009636-T1|Name=KJC3_009636-T1|organism=Aspergillus niger KJC3|type=CDS|length=2340bp|location=Sequence derived from alignment at ch7:969310..970336- (Aspergillus niger KJC3)
CTTATCCCCGCTCCCCGTGGTACCGGTCTCGTTGCCTCCCCCGCTGTCAA
GCGTCTGCTCCAGCTTGCCGGTGTCCAGGACGCCTACACCTGCTCTTCCG
GTTCCACCAAGACCCTCGAGAACACTCTCAAGGCTACTTTCCTTGCCGTC
GTCAACACCTACGGCTTCCTCACCCCCAACCTCTGGAAGGAGACTAAGCT
CATCCGCAGCCCTCTGGAGGAGTTCGGTGATGTCCTGCGTCAGGGCAAGA
AGTACTAGATCAAACCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACC
CGCTTCAAGGCCGTCGTCGTCATCGGTGACTCCGAGGGTCACATCGGTCT
CGGTATCAAGACCTCCAAGGAAGTCGCTACCGCTATCCGTGCTGCCATCA
CCATCGCCAAGCTCAGCGTTCTCCCCGTCCGTAGAGGTTACTGGGGTACC
AACCTTGGTGAGCCTCACTCTCTGCCCGTTAAGCAGAGCGCCAAGTGTGG
TTCCGTCTCCGTCAGAATGGCTGACGCTCCCCGTGGACGTGGAGGATTCG
GCTCTCGCGGTGACCGTGGTGGTGACCGTGGCCGTGGCCGTGGTCGCCGT
GGTCGTCGCGGTGGTGCCAAGGAGCAGGAGAAGGAATGGCAGCCCGTCAC
CAAGCTCGGCCGTCTCGTCAAGGCTGGCAAGATCACCAGCATGGAGCAGA
TCTACCTGCACTCCCTGCCCGTGAAGGAGTACCAGATTGTGGACTTCTTC
CTCCCCAAGCTGAAGGATGAGGTCATGAAGCTTATCCCCGCTCCCCGTGG
TACCGGTCTCGTTGCCTCCCCCGCTGTCAAGCGTCTGCTCCAGCTTGCCG
GTGTCCAGGACGCCTACACCTGCTCTTCCGGTTCCACCAAGACCCTCGAG
AACACTCTCAAGGCTACTTTCCTTGCCGTCGTCAACACCTACGGCTTCCT
CACCCCCAACCTCTGGAAGGAGACTAAGCTCATCCGCAGCCCTCTGGAGG
AGTTCGGTGATGTCCTGCGTCAGGGCAAGAAGTACTAGATCAAACCCGTC
CAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCCGTCGTCGT
CATCGGTGACTCCGAGGGTCACATCGGTCTCGGTATCAAGACCTCCAAGG
AAGTCGCTACCGCTATCCGTGCTGCCATCACCATCGCCAAGCTCAGCGTT
CTCCCCGTCCGTAGAGGTTACTGGGGTACCAACCTTGGTGAGCCTCACTC
TCTGCCCGTTAAGCAGAGCGCCAAGTGTGGTTCCGTCTCCGTCAGAATGG
CTGACGCTCCCCGTGGACGTGGAGGATTCGGCTCTCGCGGTGACCGTGGT
GGTGACCGTGGCCGTGGCCGTGGTCGCCGTGGTCGTCGCGGTGGTGCCAA
GGAGCAGGAGAAGGAATGGCAGCCCGTCACCAAGCTCGGCCGTCTCGTCA
AGGCTGGCAAGATCACCAGCATGGAGCAGATCTACCTGCACTCCCTGCCC
GTGAAGGAGTACCAGATTGTGGACTTCTTCCTCCCCAAGCTGAAGGATGA
GGTCATGAAGCTTATCCCCGCTCCCCGTGGTACCGGTCTCGTTGCCTCCC
CCGCTGTCAAGCGTCTGCTCCAGCTTGCCGGTGTCCAGGACGCCTACACC
TGCTCTTCCGGTTCCACCAAGACCCTCGAGAACACTCTCAAGGCTACTTT
CCTTGCCGTCGTCAACACCTACGGCTTCCTCACCCCCAACCTCTGGAAGG
AGACTAAGCTCATCCGCAGCCCTCTGGAGGAGTTCGGTGATGTCCTGCGT
CAGGGCAAGAAGTACTAGATCAAACCCGTCCAGAAGCAGACCCGTGCCGG
TCAGCGTACCCGCTTCAAGGCCGTCGTCGTCATCGGTGACTCCGAGGGTC
ACATCGGTCTCGGTATCAAGACCTCCAAGGAAGTCGCTACCGCTATCCGT
GCTGCCATCACCATCGCCAAGCTCAGCGTTCTCCCCGTCCGTAGAGGTTA
CTGGGGTACCAACCTTGGTGAGCCTCACTCTCTGCCCGTTAAGCAGAGCG
CCAAGTGTGGTTCCGTCTCCGTCAGAATGGCTGACGCTCCCCGTGGACGT
GGAGGATTCGGCTCTCGCGGTGACCGTGGTGGTGACCGTGGCCGTGGCCG
TGGTCGCCGTGGTCGTCGCGGTGGTGCCAAGGAGCAGGAGAAGGAATGGC
AGCCCGTCACCAAGCTCGGCCGTCTCGTCAAGGCTGGCAAGATCACCAGC
ATGGAGCAGATCTACCTGCACTCCCTGCCCGTGAAGGAGTACCAGATTGT
GGACTTCTTCCTCCCCAAGCTGAAGGATGAGGTCATGAAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS2KJC3_009636Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009636-T1KJC3_009636-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009636-T1.cdsKJC3_009636-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009636-T1.exon3KJC3_009636-T1.exon3Aspergillus niger KJC3exon
KJC3_009636-T1.exon2KJC3_009636-T1.exon2Aspergillus niger KJC3exon
KJC3_009636-T1.exon1KJC3_009636-T1.exon1Aspergillus niger KJC3exon


Properties
Property NameValue
NoteBUSCO:EOG09264903
DBxrefInterPro:IPR020568
DBxrefInterPro:IPR018192
DBxrefInterPro:IPR014721
DBxrefInterPro:IPR005324
DBxrefInterPro:IPR005711
DBxrefInterPro:IPR013810
DBxrefPFAM:PF03719
DBxrefPFAM:PF00333
Product40S ribosomal protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch7supercontigch7:969310..970336 -
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