KJC3_009719-T1, KJC3_009719-T1 (mRNA) Aspergillus niger KJC3

Overview


Name	KJC3_009719-T1
Unique Name	KJC3_009719-T1
Type	mRNA
Organism	Aspergillus niger KJC3

Sequences

The following sequences are available for this feature:

mRNA from alignment at ch7:1217454..1219926-
coding sequence from alignment at ch7:1217454..1219926-

mRNA from alignment at ch7:1217454..1219926-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>KJC3_009719-T1 ID=KJC3_009719-T1|Name=KJC3_009719-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2473bp|location=Sequence derived from alignment at ch7:1217454..1219926- (Aspergillus niger KJC3)
TGATTCCGGCCAAAGCCCCCCTCATCCCTCCCGGTTTCTTTCTGAATATT
CGATGGTAGACGGAACATGCTGGTCCCTATCATCCCTGATTTACCGACCT
TTTTATGCTCGCAGCAAACCTTTGAGAAGCATTCTTACTCCTTAGTCTTG
TCTTGACTACATGTGAGTCTCGCTATAGAGAACATCATGTTTCCCTCCGC
ACTGATTGATCAAGCGATGGTTCAATCATATTATTCTCCAGAGGACGAGG
TCCGCTTCGGTCCACAACCCAAGCGAGAAGCTTTGTCAATAGCACACTCT
GTTCGGAGTGACTCTCTTCATGACATGGTGGATAGAAGCTCTGCTTGTGT
GAGCCCTAGCAGCGAGCTAGATAGCAAGAACCGGAACTCCACCAGGCGTC
GGATACAAGTGGCAGTAAGTTCCTTTATCCAAAGATAAGCTGCGACTGTA
AGAAGGTTAGGCACTGATCACAATCAGTGTAACCGATGTCGAAAAAGAAA
GATCAAATGTAGTGGTGACAGTGGCAATGGACATGGTTGCTCCAACTGCA
TCAATTCCGGAAACAAGAATTGTCAGTTCTTGAGGGTATGTACTATGTCC
TCATCAGAGCCCTCAACCATAAAGACATTTAGCTGATCGGTCATAGGTGA
ATTCGGAAATGATGCAGCCGAGAGCCAGCGAATGGTCCCAGATCTCGGGA
GCTACTACAATTTCTCCGTCTCCAAGATCCGGTCTGTATGTACCGACTAT
GACGTCCAAGATAGGGGAAGTGCCAGCGACCTCTCCCAGTTTTCGCATGG
CCCCTTTCCCGCGGGCCTCCAGTTATGATCTCGGGTCAGCCGATCCTCAT
AGTGCATACCATCGACACCCCTTTGGAGTGGACCACGGTTTGCCCTATCC
AGACGAGGCTTCAGCGTACGCATCTCCGTCGTCTGGGTACATCCTGCCGA
GTGCTCCACCGAACATATTCATGGATCACTGCGGACAGACATGGAATCCA
AAAGTGTGGAATCAAAGTGTTCATGTTGGCAGGAGTCCCAGTGGACCGGT
ATACTCAGACAGCGATCACGAGGCCACATTGAATCAATCAGCGTTTTACG
TTCCTCATTCGACAGAAGACCTACCAATCGTCCCAACGATGAGCTTTCCT
ACCGCAGAAGGGCAAGGGACGGATCGGACGCTTCCCGATCCCAGTCGGAA
TCAGGCTCAGATGGGGATGAACTCCTTTACGACAACTGAAGAAACTCTCT
ATGGGATACCGTACGGGTACCGGACCAGCAACAGCTGGGCCCACAAGAGC
GCCATGTTGAACCATGGCCGTATGCAGAGCCCAAGCGAGGCTTACAGAAG
CGGTCCTATCAACCGGAGTAGATCGGCGCAAGATATGATGTTTGGGTACT
TGCCATCGAATGGCAGTTCATCGCCTCTAGTCCCTGCTGGTTCGTTTGCT
CCTGCGTTGGACGCGGTTGACACGAGCGACGGGCTTCGCGAGAGCCCCAG
CGACAGCCACCAACCATCGCGGACGTTCTCGCATGACCACCTTTCCGACT
ACGGCTCTGATACCTACGTGTATAGCAGTAGTGAAAGGCGCGAGAAAAAC
CACTCTCAAAGCGACGGGGCAGGGTCGATGCTGATGAGCGGCCTCACGTA
CACGCGCCCAGCGCCGGGACATCCCAGTCCTCCGCCGTTGGTTCACAGCC
CAGCGTTTCGAACAGCCACGGAGATACACCACCACACCGCTATCCCGTCG
CTGAACAGTTCGAGCGAGTACTAGGGACTGAGGTGTCCATGCGTCCCGAT
GAACGTCCAGGGTAGTTTACAAGCTATCTATAGACCGTTAAGCGCCTTGG
CAGCGCCGATCCCCAGTTGGCCACCAACAAGGGCCCTAATCCTACAAACA
GCGACGTCGGCAAACAGCACCATTTTACAAAGCCGAGTGCTTTTATTTGG
TGACCTTTTTACATACGCCCACAGAGCAAGAAGGGCAAAAACAAATCACT
CAAATGTTACACTACTAATATTAGGGTCGGTTGAGTCTGTGTTTTGGTTT
GTTTCTCCCCCTTATTTTTGTATTCTTTTTCAAGCCGGGTGCTATTGATT
ACCTTGTCAGCCTGACAGAATCCCCAGGATGGGCTGGCTGGTCATTCTTT
GTTTGCAGGTGGCTCGCTGGTTTTGATTGCTCATTTGTCAATCAATTAAT
AATTGTCTCGAACTGTTTCATTATTTGTTGAGGCATGGGAAAAGAGGGGG
CGCCGTTGTTACTACTGTTACTATTGCTATTGCTGCTGTTATTGTCATAT
TACTATTGCCATGTTTCGATTACCCCATCCATTATTCCTGTTTTATTTTA
CACTTTTTACTGTTACTTCACTGGTCTTTGTTAATGCTGCCTGGCAGCCT
AATGGGTTACACCCGCGTGGCCTTCATATTGGAGAGGGAGACGGGGGAAT
TCGTGAAAATAATAAGGATAGCA

Coding sequence (CDS) from alignment at ch7:1217454..1219926-

>KJC3_009719-T1 ID=KJC3_009719-T1|Name=KJC3_009719-T1|organism=Aspergillus niger KJC3|type=CDS|length=4392bp|location=Sequence derived from alignment at ch7:1217454..1219926- (Aspergillus niger KJC3)
GTGAATTCGGAAATGATGCAGCCGAGAGCCAGCGAATGGTCCCAGATCTC
GGGAGCTACTACAATTTCTCCGTCTCCAAGATCCGGTCTGTATGTACCGA
CTATGACGTCCAAGATAGGGGAAGTGCCAGCGACCTCTCCCAGTTTTCGC
ATGGCCCCTTTCCCGCGGGCCTCCAGTTATGATCTCGGGTCAGCCGATCC
TCATAGTGCATACCATCGACACCCCTTTGGAGTGGACCACGGTTTGCCCT
ATCCAGACGAGGCTTCAGCGTACGCATCTCCGTCGTCTGGGTACATCCTG
CCGAGTGCTCCACCGAACATATTCATGGATCACTGCGGACAGACATGGAA
TCCAAAAGTGTGGAATCAAAGTGTTCATGTTGGCAGGAGTCCCAGTGGAC
CGGTATACTCAGACAGCGATCACGAGGCCACATTGAATCAATCAGCGTTT
TACGTTCCTCATTCGACAGAAGACCTACCAATCGTCCCAACGATGAGCTT
TCCTACCGCAGAAGGGCAAGGGACGGATCGGACGCTTCCCGATCCCAGTC
GGAATCAGGCTCAGATGGGGATGAACTCCTTTACGACAACTGAAGAAACT
CTCTATGGGATACCGTACGGGTACCGGACCAGCAACAGCTGGGCCCACAA
GAGCGCCATGTTGAACCATGGCCGTATGCAGAGCCCAAGCGAGGCTTACA
GAAGCGGTCCTATCAACCGGAGTAGATCGGCGCAAGATATGATGTTTGGG
TACTTGCCATCGAATGGCAGTTCATCGCCTCTAGTCCCTGCTGGTTCGTT
TGCTCCTGCGTTGGACGCGGTTGACACGAGCGACGGGCTTCGCGAGAGCC
CCAGCGACAGCCACCAACCATCGCGGACGTTCTCGCATGACCACCTTTCC
GACTACGGCTCTGATACCTACGTGTATAGCAGTAGTGAAAGGCGCGAGAA
AAACCACTCTCAAAGCGACGGGGCAGGGTCGATGCTGATGAGCGGCCTCA
CGTACACGCGCCCAGCGCCGGGACATCCCAGTCCTCCGCCGTTGGTTCAC
AGCCCAGCGTTTCGAACAGCCACGGAGATACACCACCACACCGCTATCCC
GTCGCTGAACAGTTCGAGCGAGTACTAGTGTAACCGATGTCGAAAAAGAA
AGATCAAATGTAGTGGTGACAGTGGCAATGGACATGGTTGCTCCAACTGC
ATCAATTCCGGAAACAAGAATTGTCAGTTCTTGAGGATGTTTCCCTCCGC
ACTGATTGATCAAGCGATGGTTCAATCATATTATTCTCCAGAGGACGAGG
TCCGCTTCGGTCCACAACCCAAGCGAGAAGCTTTGTCAATAGCACACTCT
GTTCGGAGTGACTCTCTTCATGACATGGTGGATAGAAGCTCTGCTTGTGT
GAGCCCTAGCAGCGAGCTAGATAGCAAGAACCGGAACTCCACCAGGCGTC
GGATACAAGTGGCAGTGAATTCGGAAATGATGCAGCCGAGAGCCAGCGAA
TGGTCCCAGATCTCGGGAGCTACTACAATTTCTCCGTCTCCAAGATCCGG
TCTGTATGTACCGACTATGACGTCCAAGATAGGGGAAGTGCCAGCGACCT
CTCCCAGTTTTCGCATGGCCCCTTTCCCGCGGGCCTCCAGTTATGATCTC
GGGTCAGCCGATCCTCATAGTGCATACCATCGACACCCCTTTGGAGTGGA
CCACGGTTTGCCCTATCCAGACGAGGCTTCAGCGTACGCATCTCCGTCGT
CTGGGTACATCCTGCCGAGTGCTCCACCGAACATATTCATGGATCACTGC
GGACAGACATGGAATCCAAAAGTGTGGAATCAAAGTGTTCATGTTGGCAG
GAGTCCCAGTGGACCGGTATACTCAGACAGCGATCACGAGGCCACATTGA
ATCAATCAGCGTTTTACGTTCCTCATTCGACAGAAGACCTACCAATCGTC
CCAACGATGAGCTTTCCTACCGCAGAAGGGCAAGGGACGGATCGGACGCT
TCCCGATCCCAGTCGGAATCAGGCTCAGATGGGGATGAACTCCTTTACGA
CAACTGAAGAAACTCTCTATGGGATACCGTACGGGTACCGGACCAGCAAC
AGCTGGGCCCACAAGAGCGCCATGTTGAACCATGGCCGTATGCAGAGCCC
AAGCGAGGCTTACAGAAGCGGTCCTATCAACCGGAGTAGATCGGCGCAAG
ATATGATGTTTGGGTACTTGCCATCGAATGGCAGTTCATCGCCTCTAGTC
CCTGCTGGTTCGTTTGCTCCTGCGTTGGACGCGGTTGACACGAGCGACGG
GCTTCGCGAGAGCCCCAGCGACAGCCACCAACCATCGCGGACGTTCTCGC
ATGACCACCTTTCCGACTACGGCTCTGATACCTACGTGTATAGCAGTAGT
GAAAGGCGCGAGAAAAACCACTCTCAAAGCGACGGGGCAGGGTCGATGCT
GATGAGCGGCCTCACGTACACGCGCCCAGCGCCGGGACATCCCAGTCCTC
CGCCGTTGGTTCACAGCCCAGCGTTTCGAACAGCCACGGAGATACACCAC
CACACCGCTATCCCGTCGCTGAACAGTTCGAGCGAGTACTAGTGTAACCG
ATGTCGAAAAAGAAAGATCAAATGTAGTGGTGACAGTGGCAATGGACATG
GTTGCTCCAACTGCATCAATTCCGGAAACAAGAATTGTCAGTTCTTGAGG
ATGTTTCCCTCCGCACTGATTGATCAAGCGATGGTTCAATCATATTATTC
TCCAGAGGACGAGGTCCGCTTCGGTCCACAACCCAAGCGAGAAGCTTTGT
CAATAGCACACTCTGTTCGGAGTGACTCTCTTCATGACATGGTGGATAGA
AGCTCTGCTTGTGTGAGCCCTAGCAGCGAGCTAGATAGCAAGAACCGGAA
CTCCACCAGGCGTCGGATACAAGTGGCAGTGAATTCGGAAATGATGCAGC
CGAGAGCCAGCGAATGGTCCCAGATCTCGGGAGCTACTACAATTTCTCCG
TCTCCAAGATCCGGTCTGTATGTACCGACTATGACGTCCAAGATAGGGGA
AGTGCCAGCGACCTCTCCCAGTTTTCGCATGGCCCCTTTCCCGCGGGCCT
CCAGTTATGATCTCGGGTCAGCCGATCCTCATAGTGCATACCATCGACAC
CCCTTTGGAGTGGACCACGGTTTGCCCTATCCAGACGAGGCTTCAGCGTA
CGCATCTCCGTCGTCTGGGTACATCCTGCCGAGTGCTCCACCGAACATAT
TCATGGATCACTGCGGACAGACATGGAATCCAAAAGTGTGGAATCAAAGT
GTTCATGTTGGCAGGAGTCCCAGTGGACCGGTATACTCAGACAGCGATCA
CGAGGCCACATTGAATCAATCAGCGTTTTACGTTCCTCATTCGACAGAAG
ACCTACCAATCGTCCCAACGATGAGCTTTCCTACCGCAGAAGGGCAAGGG
ACGGATCGGACGCTTCCCGATCCCAGTCGGAATCAGGCTCAGATGGGGAT
GAACTCCTTTACGACAACTGAAGAAACTCTCTATGGGATACCGTACGGGT
ACCGGACCAGCAACAGCTGGGCCCACAAGAGCGCCATGTTGAACCATGGC
CGTATGCAGAGCCCAAGCGAGGCTTACAGAAGCGGTCCTATCAACCGGAG
TAGATCGGCGCAAGATATGATGTTTGGGTACTTGCCATCGAATGGCAGTT
CATCGCCTCTAGTCCCTGCTGGTTCGTTTGCTCCTGCGTTGGACGCGGTT
GACACGAGCGACGGGCTTCGCGAGAGCCCCAGCGACAGCCACCAACCATC
GCGGACGTTCTCGCATGACCACCTTTCCGACTACGGCTCTGATACCTACG
TGTATAGCAGTAGTGAAAGGCGCGAGAAAAACCACTCTCAAAGCGACGGG
GCAGGGTCGATGCTGATGAGCGGCCTCACGTACACGCGCCCAGCGCCGGG
ACATCCCAGTCCTCCGCCGTTGGTTCACAGCCCAGCGTTTCGAACAGCCA
CGGAGATACACCACCACACCGCTATCCCGTCGCTGAACAGTTCGAGCGAG
TACTAGTGTAACCGATGTCGAAAAAGAAAGATCAAATGTAGTGGTGACAG
TGGCAATGGACATGGTTGCTCCAACTGCATCAATTCCGGAAACAAGAATT
GTCAGTTCTTGAGGATGTTTCCCTCCGCACTGATTGATCAAGCGATGGTT
CAATCATATTATTCTCCAGAGGACGAGGTCCGCTTCGGTCCACAACCCAA
GCGAGAAGCTTTGTCAATAGCACACTCTGTTCGGAGTGACTCTCTTCATG
ACATGGTGGATAGAAGCTCTGCTTGTGTGAGCCCTAGCAGCGAGCTAGAT
AGCAAGAACCGGAACTCCACCAGGCGTCGGATACAAGTGGCA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0042025	host cell nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
KJC3_009719	KJC3_009719	Aspergillus niger KJC3	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_009719-T1	KJC3_009719-T1-protein	Aspergillus niger KJC3	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_009719-T1.cds	KJC3_009719-T1.cds	Aspergillus niger KJC3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_009719-T1.utr3p1	KJC3_009719-T1.utr3p1	Aspergillus niger KJC3	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_009719-T1.exon3	KJC3_009719-T1.exon3	Aspergillus niger KJC3	exon
KJC3_009719-T1.exon2	KJC3_009719-T1.exon2	Aspergillus niger KJC3	exon
KJC3_009719-T1.exon1	KJC3_009719-T1.exon1	Aspergillus niger KJC3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_009719-T1.utr5p1	KJC3_009719-T1.utr5p1	Aspergillus niger KJC3	five_prime_UTR

Properties


Property Name	Value
DBxref	InterPro:IPR036864
DBxref	InterPro:IPR001138
DBxref	PFAM:PF00172
Product	hypothetical protein

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC3	2021-10-31

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ch7	supercontig	ch7:1217454..1219926 -

Main menu

You are here

KJC3_009719-T1, KJC3_009719-T1 (mRNA) Aspergillus niger KJC3

Main menu

User login

You are here

KJC3_009719-T1, KJC3_009719-T1 (mRNA) Aspergillus niger KJC3