You are here

Home

KJC3_009884-T1, KJC3_009884-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_009884-T1
Unique NameKJC3_009884-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch7:1737032..1738705-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_009884-T1 ID=KJC3_009884-T1|Name=KJC3_009884-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1674bp|location=Sequence derived from alignment at ch7:1737032..1738705- (Aspergillus niger KJC3)
ATCCAATTTCTTTGTCCGGTCCATCCATTCATATACTCCCCGCATAAAGG
AGACATTAAATTCCCTCCAATCTACAAGAGAAACCGCAATGCATAATCTC
ACCATATAACCACTTAACCTACGACACCCCCTCCCTCAAAGTCCAATCAA
CCTACATACAAAATGCCCCGATACGCAGAAGACCACGACCGCTACGATGA
CAGCAACCGCGCATTTCTCCAAGCCTTCATGGCGCGGTCCACCATGACCT
TTACACAAGCAAAGCCCGTTCTGGCTGCTATATTCTCCATCCGAGGTAAT
CCTCCCATACTCATACACCAAAATACCAAACTAAATCCGGATCAATATAG
ACGACGAACAAATCTCCCCAGAAGACATAACGGAAGACGACCTCCAAACC
TACATCGCCGCCGCTAACAGCGCCATATCCCCCTTCGACCTCGAAATCCG
GAGCATACTACCCCAGATTGAAATCAACAACAACAATGACCCTCCCCCAG
CTCCGGAACGAGTCTACGCCCTCGTCAACACAACCAGCGACGCCCTCACC
CAGCTCGCAACAACATACTCCGCCGACGAAATCGCCTTCGTGAAGCGCAT
CCTCGACGCTATGTTCGACACATACAATACCCGCCGCCAGGAAGCAATGG
TCATAAGTAGTATGCAGGCATTGCAGCTGGCCAAGGCTGGTGCAGGGGAC
GCAAATAGACGGGAGTCAGGGACACAGCAGCAAGCGACGCAGGGAGGCGC
GGCGCAGTCGCTGACTATGACGCAGGCGGAGACGATGCTGAAGCAGCTTG
TCGAGCAGGGGTGGTTTGAGAAGAGCAGGAAGGGGTATTATCGGTTGAGT
CCGCGCGGGTTGATGGAGTTGAGGGGGTGGTTGGTGGCGGCGTATAATGA
TGAGGGGATTAGGAAGATTAAGTTCTGTGCTGCGTGTAGGGATATCATTA
CTGCTGTGAGTTGGAGAGTATTCCTTGCTATGCGGGCTTGTTGGCTAATG
ATTCTGTGATTGTGACCAGGGCCAACGATGCGGAGACCGCGATTGTACTG
GACGATTGCACGACCACTGCATGCGGAATTTCTTTCGTATGCAACAGGCT
GAAAGCTGTCCTGTGTGCAAGACTGCGTGGCCGGGTGATAGATACGTTGG
TGAGCGCGCGATTACTATGTCTGATCCGGCTGCGCAGAGGGCTAGACGGT
CGGCTGCGAATACTCAGCAGGCGGAAGCTGGGCCTAGTACGCAGTTCACG
TTGCCGGAACTGGATGTTGAAGATGAAGCGGATGGTGGTGAGGAAGAGGC
TGGGAGTGATTGAAGAAGCTGGATGATGATTATTAGGATTATGTTATCAC
CTTAAGGCTGCCTAAGGAGCATGTCGCGAAGCATTTGGGCCTGCTATGAC
GCTCTCCGGATGCGATCAGGACTTCGAGGATCGGAGGCTTCGAGCACTCG
GGAGCCGCAGGATACAGGGTCAGATACGCCTACAAGGTCCTCCTGACGGA
GAGGGCACTTGCACGATGCGTATTGAGGGGATCAGCAGTGGTTGGTCCGT
TCACCAGCCCCGTTTCAACGACCACTCAATGTGTCTCCTACAGACTACCG
TATCTGGTATCGGTCGAAGATGGTCATAATAGATGGCCACACCGTTTCGA
AAGAGTCGAAAGAAGGGGGGGGGG
back to top

Coding sequence (CDS) from alignment at ch7:1737032..1738705-

>KJC3_009884-T1 ID=KJC3_009884-T1|Name=KJC3_009884-T1|organism=Aspergillus niger KJC3|type=CDS|length=3096bp|location=Sequence derived from alignment at ch7:1737032..1738705- (Aspergillus niger KJC3)
GGCCAACGATGCGGAGACCGCGATTGTACTGGACGATTGCACGACCACTG
CATGCGGAATTTCTTTCGTATGCAACAGGCTGAAAGCTGTCCTGTGTGCA
AGACTGCGTGGCCGGGTGATAGATACGTTGGTGAGCGCGCGATTACTATG
TCTGATCCGGCTGCGCAGAGGGCTAGACGGTCGGCTGCGAATACTCAGCA
GGCGGAAGCTGGGCCTAGTACGCAGTTCACGTTGCCGGAACTGGATGTTG
AAGATGAAGCGGATGGTGGTGAGGAAGAGGCTGGGAGTGATTGAACGACG
AACAAATCTCCCCAGAAGACATAACGGAAGACGACCTCCAAACCTACATC
GCCGCCGCTAACAGCGCCATATCCCCCTTCGACCTCGAAATCCGGAGCAT
ACTACCCCAGATTGAAATCAACAACAACAATGACCCTCCCCCAGCTCCGG
AACGAGTCTACGCCCTCGTCAACACAACCAGCGACGCCCTCACCCAGCTC
GCAACAACATACTCCGCCGACGAAATCGCCTTCGTGAAGCGCATCCTCGA
CGCTATGTTCGACACATACAATACCCGCCGCCAGGAAGCAATGGTCATAA
GTAGTATGCAGGCATTGCAGCTGGCCAAGGCTGGTGCAGGGGACGCAAAT
AGACGGGAGTCAGGGACACAGCAGCAAGCGACGCAGGGAGGCGCGGCGCA
GTCGCTGACTATGACGCAGGCGGAGACGATGCTGAAGCAGCTTGTCGAGC
AGGGGTGGTTTGAGAAGAGCAGGAAGGGGTATTATCGGTTGAGTCCGCGC
GGGTTGATGGAGTTGAGGGGGTGGTTGGTGGCGGCGTATAATGATGAGGG
GATTAGGAAGATTAAGTTCTGTGCTGCGTGTAGGGATATCATTACTGCTA
TGCCCCGATACGCAGAAGACCACGACCGCTACGATGACAGCAACCGCGCA
TTTCTCCAAGCCTTCATGGCGCGGTCCACCATGACCTTTACACAAGCAAA
GCCCGTTCTGGCTGCTATATTCTCCATCCGAGGGCCAACGATGCGGAGAC
CGCGATTGTACTGGACGATTGCACGACCACTGCATGCGGAATTTCTTTCG
TATGCAACAGGCTGAAAGCTGTCCTGTGTGCAAGACTGCGTGGCCGGGTG
ATAGATACGTTGGTGAGCGCGCGATTACTATGTCTGATCCGGCTGCGCAG
AGGGCTAGACGGTCGGCTGCGAATACTCAGCAGGCGGAAGCTGGGCCTAG
TACGCAGTTCACGTTGCCGGAACTGGATGTTGAAGATGAAGCGGATGGTG
GTGAGGAAGAGGCTGGGAGTGATTGAACGACGAACAAATCTCCCCAGAAG
ACATAACGGAAGACGACCTCCAAACCTACATCGCCGCCGCTAACAGCGCC
ATATCCCCCTTCGACCTCGAAATCCGGAGCATACTACCCCAGATTGAAAT
CAACAACAACAATGACCCTCCCCCAGCTCCGGAACGAGTCTACGCCCTCG
TCAACACAACCAGCGACGCCCTCACCCAGCTCGCAACAACATACTCCGCC
GACGAAATCGCCTTCGTGAAGCGCATCCTCGACGCTATGTTCGACACATA
CAATACCCGCCGCCAGGAAGCAATGGTCATAAGTAGTATGCAGGCATTGC
AGCTGGCCAAGGCTGGTGCAGGGGACGCAAATAGACGGGAGTCAGGGACA
CAGCAGCAAGCGACGCAGGGAGGCGCGGCGCAGTCGCTGACTATGACGCA
GGCGGAGACGATGCTGAAGCAGCTTGTCGAGCAGGGGTGGTTTGAGAAGA
GCAGGAAGGGGTATTATCGGTTGAGTCCGCGCGGGTTGATGGAGTTGAGG
GGGTGGTTGGTGGCGGCGTATAATGATGAGGGGATTAGGAAGATTAAGTT
CTGTGCTGCGTGTAGGGATATCATTACTGCTATGCCCCGATACGCAGAAG
ACCACGACCGCTACGATGACAGCAACCGCGCATTTCTCCAAGCCTTCATG
GCGCGGTCCACCATGACCTTTACACAAGCAAAGCCCGTTCTGGCTGCTAT
ATTCTCCATCCGAGGGCCAACGATGCGGAGACCGCGATTGTACTGGACGA
TTGCACGACCACTGCATGCGGAATTTCTTTCGTATGCAACAGGCTGAAAG
CTGTCCTGTGTGCAAGACTGCGTGGCCGGGTGATAGATACGTTGGTGAGC
GCGCGATTACTATGTCTGATCCGGCTGCGCAGAGGGCTAGACGGTCGGCT
GCGAATACTCAGCAGGCGGAAGCTGGGCCTAGTACGCAGTTCACGTTGCC
GGAACTGGATGTTGAAGATGAAGCGGATGGTGGTGAGGAAGAGGCTGGGA
GTGATTGAACGACGAACAAATCTCCCCAGAAGACATAACGGAAGACGACC
TCCAAACCTACATCGCCGCCGCTAACAGCGCCATATCCCCCTTCGACCTC
GAAATCCGGAGCATACTACCCCAGATTGAAATCAACAACAACAATGACCC
TCCCCCAGCTCCGGAACGAGTCTACGCCCTCGTCAACACAACCAGCGACG
CCCTCACCCAGCTCGCAACAACATACTCCGCCGACGAAATCGCCTTCGTG
AAGCGCATCCTCGACGCTATGTTCGACACATACAATACCCGCCGCCAGGA
AGCAATGGTCATAAGTAGTATGCAGGCATTGCAGCTGGCCAAGGCTGGTG
CAGGGGACGCAAATAGACGGGAGTCAGGGACACAGCAGCAAGCGACGCAG
GGAGGCGCGGCGCAGTCGCTGACTATGACGCAGGCGGAGACGATGCTGAA
GCAGCTTGTCGAGCAGGGGTGGTTTGAGAAGAGCAGGAAGGGGTATTATC
GGTTGAGTCCGCGCGGGTTGATGGAGTTGAGGGGGTGGTTGGTGGCGGCG
TATAATGATGAGGGGATTAGGAAGATTAAGTTCTGTGCTGCGTGTAGGGA
TATCATTACTGCTATGCCCCGATACGCAGAAGACCACGACCGCTACGATG
ACAGCAACCGCGCATTTCTCCAAGCCTTCATGGCGCGGTCCACCATGACC
TTTACACAAGCAAAGCCCGTTCTGGCTGCTATATTCTCCATCCGAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0030915Smc5-Smc6 complex
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_009884KJC3_009884Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009884-T1KJC3_009884-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009884-T1.cdsKJC3_009884-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009884-T1.utr3p1KJC3_009884-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009884-T1.exon3KJC3_009884-T1.exon3Aspergillus niger KJC3exon
KJC3_009884-T1.exon2KJC3_009884-T1.exon2Aspergillus niger KJC3exon
KJC3_009884-T1.exon1KJC3_009884-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009884-T1.utr5p1KJC3_009884-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG092645L9
DBxrefInterPro:IPR001841
DBxrefInterPro:IPR013083
DBxrefInterPro:IPR014857
DBxrefInterPro:IPR036388
DBxrefInterPro:IPR011513
DBxrefPFAM:PF08746
DBxrefPFAM:PF07574
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch7supercontigch7:1737032..1738705 -
Powered by Drupal