You are here

Home

KJC3_009885-T1, KJC3_009885-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_009885-T1
Unique NameKJC3_009885-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch7:1738838..1739931-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_009885-T1 ID=KJC3_009885-T1|Name=KJC3_009885-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1094bp|location=Sequence derived from alignment at ch7:1738838..1739931- (Aspergillus niger KJC3)
AACCACGTCGCGCTAACGTATTTGCTCTGTGCTGTTGCAGCCTTCGCGTA
CTCTTCATCTACTCTAGATCCTCGACCTTTCCACCTATATCCATTTCTTA
TTACCGTCCAGCAGTCCATCTCCGCGAACCGAGCTTGGCGCAACACGATC
CACCATGGCCAACTATCTCGCCTCCATCTTCGGTACAGAGCAGGACAAGG
TCAACTGCTCCTTCTACTACAAAATCGGAGCTTGCAGACATGGCGACCGC
TGCTCCCGAAAGCACGTTAAGCCGTCATACTCTCAGACGATCCTGATGCC
GAACATGTACCAGAATCCCGCGTACGACCCGAAGAGCAAGATGAACCCCA
GTCAGCTACAGAACCACTTTGATGCTTTCTACGAGGATGTGTGGTGCGAG
ATGTGCAAGTACGGCGAGTTGGAGGAGTTGGTTGTCTGCGATAACAACAA
TGACCGTGAGTCGCATCCATTCATATCCCTTCCCCGGATAGTGGTAAGAT
ATAGGCTAACATAGAGTTTCTTCTTCTCTAATAGACCTCATCGGAAATGT
CTACGCGCGCTTCAAATACGAAGAAGATGCCCAGGCCGCCTGCGACGCTT
TGAATTCACGGTGGTACGCGGCACGACCTATATATTGCGAATTATCACCG
GTTACAGATTTCCGAGAAGCTTGTTGTCGGTTAAATAGCGGCGAGGGGTG
TGTACGTGGTGGATTCTGCAACTTCATTCATCGGAAGGACCCCAGCAATG
AATTGGATCGGGATCTTCGTCTCAGTACGAAGAAGTGGTTGAAGGAGCGT
GGCAGGGATGCGAGAAGTGTCAGCCGCAGTCCTAGTCCGGAGCCGACCCG
GAGGAGGTACTAGGAGGGCTCTGTGATTTGGATTGTCCTTTGTGTTGTTC
TATATGCGGCGTTGGGGGAGAATGACCATCATCTGTCAGCTGTATTTCTA
TTCTAGTTTCTTTACGCTATGATATCAACTGCATTTGCGATATCCGCAAT
ATGGTTCTGGATTGTGTTTAGGAATGAAACTGTTCTTATCTTATAGTAAT
ACTAATCTTTTATATTGGTATCTGCTATAAGAGTCCATGCTGCT
back to top

Coding sequence (CDS) from alignment at ch7:1738838..1739931-

>KJC3_009885-T1 ID=KJC3_009885-T1|Name=KJC3_009885-T1|organism=Aspergillus niger KJC3|type=CDS|length=1260bp|location=Sequence derived from alignment at ch7:1738838..1739931- (Aspergillus niger KJC3)
ACCTCATCGGAAATGTCTACGCGCGCTTCAAATACGAAGAAGATGCCCAG
GCCGCCTGCGACGCTTTGAATTCACGGTGGTACGCGGCACGACCTATATA
TTGCGAATTATCACCGGTTACAGATTTCCGAGAAGCTTGTTGTCGGTTAA
ATAGCGGCGAGGGGTGTGTACGTGGTGGATTCTGCAACTTCATTCATCGG
AAGGACCCCAGCAATGAATTGGATCGGGATCTTCGTCTCAGTACGAAGAA
GTGGTTGAAGGAGCGTGGCAGGGATGCGAGAAGTGTCAGCCGCAGTCCTA
GTCCGGAGCCGACCCGGAGGAGGTACTAGATGGCCAACTATCTCGCCTCC
ATCTTCGGTACAGAGCAGGACAAGGTCAACTGCTCCTTCTACTACAAAAT
CGGAGCTTGCAGACATGGCGACCGCTGCTCCCGAAAGCACGTTAAGCCGT
CATACTCTCAGACGATCCTGATGCCGAACATGTACCAGAATCCCGCGTAC
GACCCGAAGAGCAAGATGAACCCCAGTCAGCTACAGAACCACTTTGATGC
TTTCTACGAGGATGTGTGGTGCGAGATGTGCAAGTACGGCGAGTTGGAGG
AGTTGGTTGTCTGCGATAACAACAATGACCACCTCATCGGAAATGTCTAC
GCGCGCTTCAAATACGAAGAAGATGCCCAGGCCGCCTGCGACGCTTTGAA
TTCACGGTGGTACGCGGCACGACCTATATATTGCGAATTATCACCGGTTA
CAGATTTCCGAGAAGCTTGTTGTCGGTTAAATAGCGGCGAGGGGTGTGTA
CGTGGTGGATTCTGCAACTTCATTCATCGGAAGGACCCCAGCAATGAATT
GGATCGGGATCTTCGTCTCAGTACGAAGAAGTGGTTGAAGGAGCGTGGCA
GGGATGCGAGAAGTGTCAGCCGCAGTCCTAGTCCGGAGCCGACCCGGAGG
AGGTACTAGATGGCCAACTATCTCGCCTCCATCTTCGGTACAGAGCAGGA
CAAGGTCAACTGCTCCTTCTACTACAAAATCGGAGCTTGCAGACATGGCG
ACCGCTGCTCCCGAAAGCACGTTAAGCCGTCATACTCTCAGACGATCCTG
ATGCCGAACATGTACCAGAATCCCGCGTACGACCCGAAGAGCAAGATGAA
CCCCAGTCAGCTACAGAACCACTTTGATGCTTTCTACGAGGATGTGTGGT
GCGAGATGTGCAAGTACGGCGAGTTGGAGGAGTTGGTTGTCTGCGATAAC
AACAATGACC
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0089701U2AF complex
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
GO:0003723RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_009885KJC3_009885Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009885-T1KJC3_009885-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009885-T1.cdsKJC3_009885-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009885-T1.utr3p1KJC3_009885-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009885-T1.exon2KJC3_009885-T1.exon2Aspergillus niger KJC3exon
KJC3_009885-T1.exon1KJC3_009885-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009885-T1.utr5p1KJC3_009885-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR035979
DBxrefInterPro:IPR000504
DBxrefInterPro:IPR012677
DBxrefInterPro:IPR000571
DBxrefInterPro:IPR009145
DBxrefPFAM:PF00642
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch7supercontigch7:1738838..1739931 -
Powered by Drupal