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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:1855618..1858292+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009926-T1 ID=KJC3_009926-T1|Name=KJC3_009926-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2675bp|location=Sequence derived from alignment at ch7:1855618..1858292+ (Aspergillus niger KJC3)
TTCACATGGTAAAACTCTCAATAATCTCAACTCTGCCTACCCGATGCCCC
CCAAATCCCATCCCGCAACAGCCAACGCCAACGTAGGAGACTTGCCAGAG
ACAACCACCAAAGGAGAGGAGGAGATTCCAGCCTGTCAGTTCTGTCGCAA
GAAAAAAGCCAAGTGCAATCGAGCGCAGCCGTGTTCGCAATGTATGCGAT
CGGATGTTCTTTGCGTCTACGATGATCGACGGACGAAGCCCGGTCTCCGA
GCTGGGGCGGTCGACCAGCTCTATCGGCGCGTCGAGACGCTGGAGAATAT
GTTTTTGGGTCAGGAGATGCTCTGGCAGCAGATGTGGAAGGCTTTATTCC
CGAACACTGAGCCCCCGCGATCCCTGGACAAGGGAACCACGGCAGCCACG
ACCCTGACGGAGCGTCGGGAGCAGTTGAAGGCTTCATTACAGGAGCCTCC
ACCCTTAGCAGCGAAGAGGTCACTTACAGTGGCAGACGCCGACAATTCTG
CACCACTGGACTGTGTTCCTCTCCCAGCCAAACGCGCCCGTGTGGAGGAC
GAAGTGGCTCCCCATGCGGCTGTCCTAGAGCCCGAGCTCTTCTTGGCCAA
CTCTTTACCTGACATCGTCTTGAACGAACTGGTGGATTTCTACTTTGTCA
ACATCCATCCGTGGATACCGATACTACACGTTAAGAGATTCCGTGAGCGC
ATGCGATCGCCGGAGGAACGAGGGCATATCAATTGCATCTTACATGCCAT
CATTTCTGTCTGTGCCCGCTTTTCACAAAATGGCCCAAATGGCGATACGT
TGAACTTAAAAGAGATCGCCAAGAAAAGTCGGCAAGAGGTAATATTGCAA
AGCACTGAAACCTTCTCCGTTGAGAATCTCCAAGCGCTAGTGATCGTCGC
ATTTGAGACAGTGAGCAAGAGGCCCACGCCATGGATATCCGGGAACAAGT
AGACTGATTTCATTCGAACAGATTAATCGCGGCCGTGGGCCCTCCTCATG
GTCTATCATTGGCAGCATGGCGGGAACCGTGGAGCAGCTTCAGCTTGGCG
TGGAAGAAGATGACCTGTATCGTGTCAAGCGCATGGGAGAAAGACTGATC
AGGCGCATGGTCTTTCTCACACCATCTCGGTCATGGAGTGAAGCAGAAGA
GCGTCGCCGTGTATTCTGGGCAGTCTTTCTCATGGACCGCTTCTGCAGTG
TCTCGACAGGCTGGAAGATCAGTCTGAGGAATGCTGATGTGAAGCGCCGT
CTCCCGTGTGAAGGTGCTCTGTGGGAAAAGGAACAGGAGGTCTGCACCCC
GTATTTCGGCATCTCTGATTTCAAGAACACTTCCATGCCTAATAGTCACT
CAACTTCGATGGATGGCTGTGAAGAACAGGCCATCGGCGCATTTGCCTAC
ATCATCGAGGCTACTGAGTCACTGGCCTTAGTGACCAACTTCTATCTCCA
CCACGTCTTTCTGATTAACGATGCCAGCAAGGCACGATTATGGCTCGTCA
AATTCAAGGAACTAGATCTGCGACTGATTCAGTACGTATCATCTCTTCCC
AAGGAATGTCTAAACACCAGTGATGCTGACGCGCGCAGATGGAAAATCCA
CTTGCCTCCCAAATGGCGCGAAGCCTGCGTCCTAAATGAACACAGAGTCA
TGGACCCCAATCTGACTCTGGCACACATCACCCACAATACGGCGGTAATT
CTGCTGCATCAGGGCATCGCCTATCCACCATCGCATTGGCAGAACTGTCC
CATTAAGCTCCCATCAGCATCCTCTGCTGATACGTGCCTTGAAGCGGCTT
CAGAGATAGCAACTATTGCTAATCAATTCCTGTCCTTTTCTCCCATCTTC
ACGAATCCCCAATTTTCTTTTTGTCTATTCATCGCCGGCCGCACACTCCT
CGCACACGCTAGGTACAATAGGGTACCGCCTTCACCCGCACTCAACACCC
TAATTGCAAACCTGATGGAGATCTCGCAGCGGTGGACAAGACACCATGAC
GCCAGCGAATCCCAGCAAGAGGAGAGCCTGGCATTCAAGTTTGCCACCCG
ACTCATCGAAGCCCAGCAGAATCGAACCAGTGCATCTCGTCCGAGTCTGG
ATATTCGCACGACTGCGTATTCAGATGAATCAAAGGAGGAGATGTACAAA
GATCCCATGGGAACAAACCAGGATGATCTCCCAGACTATGAATCGCTTAG
CCGACCACTGCAGCTGGCTTCATTCCCTTCGCAGGAGTCCACTTCCTGCA
CGTTCGACCCATTCAGTCTGGCCTTCCCACCGCTGCCACCAGCCTTTCAG
CAGGACTTTTCGCCCACTGGTCTCGACCCGCTCTCTTTCTATAATATGCA
ATTGCCGTCGGAGTCTATGTCTTCGCCTCTTGGTACGAGAAGCCACGGAT
CGGGTTCTCAGCACGATTCGGAGAGTTCCATGACCAGTCTCTTGCCGACG
GATATTTCTCATCTCTTCGATATGACGTCTAGTCCGGGGCAGAGAATCAG
TTATTACGGCAATACACGGGGAGTGACCAACAATTCGATAGTCGAGGGAG
CCGACAATTAGACGAGTAACAGAACTTGCGTGATCATATTTCCTCTCATT
TACGTTGAGCCTCTATATTTTATGTCTACTTCCCTGCCCCTCAGAGGGGG
TTCTTTAATGCTTCTACTCCCTGCC back to topCoding sequence (CDS) from alignment at ch7:1855618..1858292+ >KJC3_009926-T1 ID=KJC3_009926-T1|Name=KJC3_009926-T1|organism=Aspergillus niger KJC3|type=CDS|length=7200bp|location=Sequence derived from alignment at ch7:1855618..1858292+ (Aspergillus niger KJC3)
ATGCCCCCCAAATCCCATCCCGCAACAGCCAACGCCAACGTAGGAGACTT
GCCAGAGACAACCACCAAAGGAGAGGAGGAGATTCCAGCCTGTCAGTTCT
GTCGCAAGAAAAAAGCCAAGTGCAATCGAGCGCAGCCGTGTTCGCAATGT
ATGCGATCGGATGTTCTTTGCGTCTACGATGATCGACGGACGAAGCCCGG
TCTCCGAGCTGGGGCGGTCGACCAGCTCTATCGGCGCGTCGAGACGCTGG
AGAATATGTTTTTGGGTCAGGAGATGCTCTGGCAGCAGATGTGGAAGGCT
TTATTCCCGAACACTGAGCCCCCGCGATCCCTGGACAAGGGAACCACGGC
AGCCACGACCCTGACGGAGCGTCGGGAGCAGTTGAAGGCTTCATTACAGG
AGCCTCCACCCTTAGCAGCGAAGAGGTCACTTACAGTGGCAGACGCCGAC
AATTCTGCACCACTGGACTGTGTTCCTCTCCCAGCCAAACGCGCCCGTGT
GGAGGACGAAGTGGCTCCCCATGCGGCTGTCCTAGAGCCCGAGCTCTTCT
TGGCCAACTCTTTACCTGACATCGTCTTGAACGAACTGGTGGATTTCTAC
TTTGTCAACATCCATCCGTGGATACCGATACTACACGTTAAGAGATTCCG
TGAGCGCATGCGATCGCCGGAGGAACGAGGGCATATCAATTGCATCTTAC
ATGCCATCATTTCTGTCTGTGCCCGCTTTTCACAAAATGGCCCAAATGGC
GATACGTTGAACTTAAAAGAGATCGCCAAGAAAAGTCGGCAAGAGGTAAT
ATTGCAAAGCACTGAAACCTTCTCCGTTGAGAATCTCCAAGCGCTAGTGA
TCGTCGCATTTGAGACAATTAATCGCGGCCGTGGGCCCTCCTCATGGTCT
ATCATTGGCAGCATGGCGGGAACCGTGGAGCAGCTTCAGCTTGGCGTGGA
AGAAGATGACCTGTATCGTGTCAAGCGCATGGGAGAAAGACTGATCAGGC
GCATGGTCTTTCTCACACCATCTCGGTCATGGAGTGAAGCAGAAGAGCGT
CGCCGTGTATTCTGGGCAGTCTTTCTCATGGACCGCTTCTGCAGTGTCTC
GACAGGCTGGAAGATCAGTCTGAGGAATGCTGATGTGAAGCGCCGTCTCC
CGTGTGAAGGTGCTCTGTGGGAAAAGGAACAGGAGGTCTGCACCCCGTAT
TTCGGCATCTCTGATTTCAAGAACACTTCCATGCCTAATAGTCACTCAAC
TTCGATGGATGGCTGTGAAGAACAGGCCATCGGCGCATTTGCCTACATCA
TCGAGGCTACTGAGTCACTGGCCTTAGTGACCAACTTCTATCTCCACCAC
GTCTTTCTGATTAACGATGCCAGCAAGGCACGATTATGGCTCGTCAAATT
CAAGGAACTAGATCTGCGACTGATTCAATGGAAAATCCACTTGCCTCCCA
AATGGCGCGAAGCCTGCGTCCTAAATGAACACAGAGTCATGGACCCCAAT
CTGACTCTGGCACACATCACCCACAATACGGCGGTAATTCTGCTGCATCA
GGGCATCGCCTATCCACCATCGCATTGGCAGAACTGTCCCATTAAGCTCC
CATCAGCATCCTCTGCTGATACGTGCCTTGAAGCGGCTTCAGAGATAGCA
ACTATTGCTAATCAATTCCTGTCCTTTTCTCCCATCTTCACGAATCCCCA
ATTTTCTTTTTGTCTATTCATCGCCGGCCGCACACTCCTCGCACACGCTA
GGTACAATAGGGTACCGCCTTCACCCGCACTCAACACCCTAATTGCAAAC
CTGATGGAGATCTCGCAGCGGTGGACAAGACACCATGACGCCAGCGAATC
CCAGCAAGAGGAGAGCCTGGCATTCAAGTTTGCCACCCGACTCATCGAAG
CCCAGCAGAATCGAACCAGTGCATCTCGTCCGAGTCTGGATATTCGCACG
ACTGCGTATTCAGATGAATCAAAGGAGGAGATGTACAAAGATCCCATGGG
AACAAACCAGGATGATCTCCCAGACTATGAATCGCTTAGCCGACCACTGC
AGCTGGCTTCATTCCCTTCGCAGGAGTCCACTTCCTGCACGTTCGACCCA
TTCAGTCTGGCCTTCCCACCGCTGCCACCAGCCTTTCAGCAGGACTTTTC
GCCCACTGGTCTCGACCCGCTCTCTTTCTATAATATGCAATTGCCGTCGG
AGTCTATGTCTTCGCCTCTTGGTACGAGAAGCCACGGATCGGGTTCTCAG
CACGATTCGGAGAGTTCCATGACCAGTCTCTTGCCGACGGATATTTCTCA
TCTCTTCGATATGACGTCTAGTCCGGGGCAGAGAATCAGTTATTACGGCA
ATACACGGGGAGTGACCAACAATTCGATAGTCGAGGGAGCCGACAATTAG
ATGCCCCCCAAATCCCATCCCGCAACAGCCAACGCCAACGTAGGAGACTT
GCCAGAGACAACCACCAAAGGAGAGGAGGAGATTCCAGCCTGTCAGTTCT
GTCGCAAGAAAAAAGCCAAGTGCAATCGAGCGCAGCCGTGTTCGCAATGT
ATGCGATCGGATGTTCTTTGCGTCTACGATGATCGACGGACGAAGCCCGG
TCTCCGAGCTGGGGCGGTCGACCAGCTCTATCGGCGCGTCGAGACGCTGG
AGAATATGTTTTTGGGTCAGGAGATGCTCTGGCAGCAGATGTGGAAGGCT
TTATTCCCGAACACTGAGCCCCCGCGATCCCTGGACAAGGGAACCACGGC
AGCCACGACCCTGACGGAGCGTCGGGAGCAGTTGAAGGCTTCATTACAGG
AGCCTCCACCCTTAGCAGCGAAGAGGTCACTTACAGTGGCAGACGCCGAC
AATTCTGCACCACTGGACTGTGTTCCTCTCCCAGCCAAACGCGCCCGTGT
GGAGGACGAAGTGGCTCCCCATGCGGCTGTCCTAGAGCCCGAGCTCTTCT
TGGCCAACTCTTTACCTGACATCGTCTTGAACGAACTGGTGGATTTCTAC
TTTGTCAACATCCATCCGTGGATACCGATACTACACGTTAAGAGATTCCG
TGAGCGCATGCGATCGCCGGAGGAACGAGGGCATATCAATTGCATCTTAC
ATGCCATCATTTCTGTCTGTGCCCGCTTTTCACAAAATGGCCCAAATGGC
GATACGTTGAACTTAAAAGAGATCGCCAAGAAAAGTCGGCAAGAGGTAAT
ATTGCAAAGCACTGAAACCTTCTCCGTTGAGAATCTCCAAGCGCTAGTGA
TCGTCGCATTTGAGACAATTAATCGCGGCCGTGGGCCCTCCTCATGGTCT
ATCATTGGCAGCATGGCGGGAACCGTGGAGCAGCTTCAGCTTGGCGTGGA
AGAAGATGACCTGTATCGTGTCAAGCGCATGGGAGAAAGACTGATCAGGC
GCATGGTCTTTCTCACACCATCTCGGTCATGGAGTGAAGCAGAAGAGCGT
CGCCGTGTATTCTGGGCAGTCTTTCTCATGGACCGCTTCTGCAGTGTCTC
GACAGGCTGGAAGATCAGTCTGAGGAATGCTGATGTGAAGCGCCGTCTCC
CGTGTGAAGGTGCTCTGTGGGAAAAGGAACAGGAGGTCTGCACCCCGTAT
TTCGGCATCTCTGATTTCAAGAACACTTCCATGCCTAATAGTCACTCAAC
TTCGATGGATGGCTGTGAAGAACAGGCCATCGGCGCATTTGCCTACATCA
TCGAGGCTACTGAGTCACTGGCCTTAGTGACCAACTTCTATCTCCACCAC
GTCTTTCTGATTAACGATGCCAGCAAGGCACGATTATGGCTCGTCAAATT
CAAGGAACTAGATCTGCGACTGATTCAATGGAAAATCCACTTGCCTCCCA
AATGGCGCGAAGCCTGCGTCCTAAATGAACACAGAGTCATGGACCCCAAT
CTGACTCTGGCACACATCACCCACAATACGGCGGTAATTCTGCTGCATCA
GGGCATCGCCTATCCACCATCGCATTGGCAGAACTGTCCCATTAAGCTCC
CATCAGCATCCTCTGCTGATACGTGCCTTGAAGCGGCTTCAGAGATAGCA
ACTATTGCTAATCAATTCCTGTCCTTTTCTCCCATCTTCACGAATCCCCA
ATTTTCTTTTTGTCTATTCATCGCCGGCCGCACACTCCTCGCACACGCTA
GGTACAATAGGGTACCGCCTTCACCCGCACTCAACACCCTAATTGCAAAC
CTGATGGAGATCTCGCAGCGGTGGACAAGACACCATGACGCCAGCGAATC
CCAGCAAGAGGAGAGCCTGGCATTCAAGTTTGCCACCCGACTCATCGAAG
CCCAGCAGAATCGAACCAGTGCATCTCGTCCGAGTCTGGATATTCGCACG
ACTGCGTATTCAGATGAATCAAAGGAGGAGATGTACAAAGATCCCATGGG
AACAAACCAGGATGATCTCCCAGACTATGAATCGCTTAGCCGACCACTGC
AGCTGGCTTCATTCCCTTCGCAGGAGTCCACTTCCTGCACGTTCGACCCA
TTCAGTCTGGCCTTCCCACCGCTGCCACCAGCCTTTCAGCAGGACTTTTC
GCCCACTGGTCTCGACCCGCTCTCTTTCTATAATATGCAATTGCCGTCGG
AGTCTATGTCTTCGCCTCTTGGTACGAGAAGCCACGGATCGGGTTCTCAG
CACGATTCGGAGAGTTCCATGACCAGTCTCTTGCCGACGGATATTTCTCA
TCTCTTCGATATGACGTCTAGTCCGGGGCAGAGAATCAGTTATTACGGCA
ATACACGGGGAGTGACCAACAATTCGATAGTCGAGGGAGCCGACAATTAG
ATGCCCCCCAAATCCCATCCCGCAACAGCCAACGCCAACGTAGGAGACTT
GCCAGAGACAACCACCAAAGGAGAGGAGGAGATTCCAGCCTGTCAGTTCT
GTCGCAAGAAAAAAGCCAAGTGCAATCGAGCGCAGCCGTGTTCGCAATGT
ATGCGATCGGATGTTCTTTGCGTCTACGATGATCGACGGACGAAGCCCGG
TCTCCGAGCTGGGGCGGTCGACCAGCTCTATCGGCGCGTCGAGACGCTGG
AGAATATGTTTTTGGGTCAGGAGATGCTCTGGCAGCAGATGTGGAAGGCT
TTATTCCCGAACACTGAGCCCCCGCGATCCCTGGACAAGGGAACCACGGC
AGCCACGACCCTGACGGAGCGTCGGGAGCAGTTGAAGGCTTCATTACAGG
AGCCTCCACCCTTAGCAGCGAAGAGGTCACTTACAGTGGCAGACGCCGAC
AATTCTGCACCACTGGACTGTGTTCCTCTCCCAGCCAAACGCGCCCGTGT
GGAGGACGAAGTGGCTCCCCATGCGGCTGTCCTAGAGCCCGAGCTCTTCT
TGGCCAACTCTTTACCTGACATCGTCTTGAACGAACTGGTGGATTTCTAC
TTTGTCAACATCCATCCGTGGATACCGATACTACACGTTAAGAGATTCCG
TGAGCGCATGCGATCGCCGGAGGAACGAGGGCATATCAATTGCATCTTAC
ATGCCATCATTTCTGTCTGTGCCCGCTTTTCACAAAATGGCCCAAATGGC
GATACGTTGAACTTAAAAGAGATCGCCAAGAAAAGTCGGCAAGAGGTAAT
ATTGCAAAGCACTGAAACCTTCTCCGTTGAGAATCTCCAAGCGCTAGTGA
TCGTCGCATTTGAGACAATTAATCGCGGCCGTGGGCCCTCCTCATGGTCT
ATCATTGGCAGCATGGCGGGAACCGTGGAGCAGCTTCAGCTTGGCGTGGA
AGAAGATGACCTGTATCGTGTCAAGCGCATGGGAGAAAGACTGATCAGGC
GCATGGTCTTTCTCACACCATCTCGGTCATGGAGTGAAGCAGAAGAGCGT
CGCCGTGTATTCTGGGCAGTCTTTCTCATGGACCGCTTCTGCAGTGTCTC
GACAGGCTGGAAGATCAGTCTGAGGAATGCTGATGTGAAGCGCCGTCTCC
CGTGTGAAGGTGCTCTGTGGGAAAAGGAACAGGAGGTCTGCACCCCGTAT
TTCGGCATCTCTGATTTCAAGAACACTTCCATGCCTAATAGTCACTCAAC
TTCGATGGATGGCTGTGAAGAACAGGCCATCGGCGCATTTGCCTACATCA
TCGAGGCTACTGAGTCACTGGCCTTAGTGACCAACTTCTATCTCCACCAC
GTCTTTCTGATTAACGATGCCAGCAAGGCACGATTATGGCTCGTCAAATT
CAAGGAACTAGATCTGCGACTGATTCAATGGAAAATCCACTTGCCTCCCA
AATGGCGCGAAGCCTGCGTCCTAAATGAACACAGAGTCATGGACCCCAAT
CTGACTCTGGCACACATCACCCACAATACGGCGGTAATTCTGCTGCATCA
GGGCATCGCCTATCCACCATCGCATTGGCAGAACTGTCCCATTAAGCTCC
CATCAGCATCCTCTGCTGATACGTGCCTTGAAGCGGCTTCAGAGATAGCA
ACTATTGCTAATCAATTCCTGTCCTTTTCTCCCATCTTCACGAATCCCCA
ATTTTCTTTTTGTCTATTCATCGCCGGCCGCACACTCCTCGCACACGCTA
GGTACAATAGGGTACCGCCTTCACCCGCACTCAACACCCTAATTGCAAAC
CTGATGGAGATCTCGCAGCGGTGGACAAGACACCATGACGCCAGCGAATC
CCAGCAAGAGGAGAGCCTGGCATTCAAGTTTGCCACCCGACTCATCGAAG
CCCAGCAGAATCGAACCAGTGCATCTCGTCCGAGTCTGGATATTCGCACG
ACTGCGTATTCAGATGAATCAAAGGAGGAGATGTACAAAGATCCCATGGG
AACAAACCAGGATGATCTCCCAGACTATGAATCGCTTAGCCGACCACTGC
AGCTGGCTTCATTCCCTTCGCAGGAGTCCACTTCCTGCACGTTCGACCCA
TTCAGTCTGGCCTTCCCACCGCTGCCACCAGCCTTTCAGCAGGACTTTTC
GCCCACTGGTCTCGACCCGCTCTCTTTCTATAATATGCAATTGCCGTCGG
AGTCTATGTCTTCGCCTCTTGGTACGAGAAGCCACGGATCGGGTTCTCAG
CACGATTCGGAGAGTTCCATGACCAGTCTCTTGCCGACGGATATTTCTCA
TCTCTTCGATATGACGTCTAGTCCGGGGCAGAGAATCAGTTATTACGGCA
ATACACGGGGAGTGACCAACAATTCGATAGTCGAGGGAGCCGACAATTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006351 | transcription, DNA-templated |
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009926-T1.utr5p1 | KJC3_009926-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009926-T1.utr3p1 | KJC3_009926-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_7.7 |
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR007219 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF04082 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:1855618..1858292 + |
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