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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:2046017..2047485- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_010001-T1 ID=KJC3_010001-T1|Name=KJC3_010001-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1469bp|location=Sequence derived from alignment at ch7:2046017..2047485- (Aspergillus niger KJC3)
CTACTACTTTCGGTTATTCATTGCACTTCTATTCTTTCGGTTGTGTTCAA
CTATATCTACAGTTGTCTCTTTACGATCGCATCACTGAGCTGTGCTAGTC
GATCAATTGCCGCTCTCCCTCAATCAAATCCCCGCCACTCACACTCATCG
CTCGCCGATGAGCTTCCGTCAAGCCCTCAGACCCTTCCGTCGCACCATGT
CCGGTGAAAAGATCTACGAAGGCGTATTCGGTATACCTCACTCCTAGCAT
TTCTGCTTTGATTTACCTCCAAGCTAATACTATGGAATGATAAATAGCCG
TCCACAAACCCCAAGGCGTCTCCTCCGCCGACGTCGTCCGCACCCTCCAA
ACGCACTTCAACCCCTCCACGCTCTTCGCCCCCTGGCTCGCTGACGAGCG
CGCCCGTCGCGCCCGCGAAAGCACCTACCAGCGCAAGCGCCGCCGCACCC
AGCGTCTCGACGTGAAGATCGGCCACGGAGGCACCCTCGACCCCCTCGCG
ACCGGCATTCTCGTCGCGGGAGTCGGCAAGGGCACGAAACACCTGAACGA
GTTCCTAGGATGCACGAAGCAATATGAGACCGTTGTGCTGTTCGGCGCCG
AGACAGATACCTATGATCGGCTGGGGAAGGTGGTGCGCAAGGCGCCCTAC
GAGCATGTGACAAGGGAGATGGTGGAGAAGGCACTGGAGCAGTTCCGTGG
GAAGATTATGCAGAGGCCGCCAATTTTCTCGGCGCTGAAGGTGAATGGCA
AGAAGCTTTATGAGTATGCCCGCGAGGGCAAGGAGCCGCCGATTGAGATC
CAGAAGAGGCCGGTCGAGGTGACGGATTTGAGGATTGTCGAGTGGTACGA
GCCTGGAACGCATGAGTTTAAGTGGCCTGAGGTTGAGGCAGACGGGGAGG
AGAAGGCTGTTGCGGAGAAGTTGTTGGCGAAGGAGGATGAGTTGCCGATT
GTGGAGAGGGAGGCGGATGGTGAAGGAGAGGCCTCTGCGAAGAGAAAGTC
CCCGCCTGCGGAGGATGCTAAGGAGGAGAAGGTAGAGGGTGGTGATACTG
AGTCTGCTCCCTCGGCTAAGAAGCAGAAGGTTGCTGATGGCGAGGCTGCG
CCTGTTGCGCCGGCCGAGCAGGAGGCGTCGGATGCTCCCAATGCTGAAGC
CGTGGAATCCTCGGAATCCAAGCCCCAGTCCCAGCCCCAGCCGGCTGCGG
TGAAGATCACCATGACGGTGTCATCTGGCTTCTATGTGCGCTCCTTGGCG
CACGATCTGGGCAAGGCGGTCGGAAGCTGCGGGCTGATGTCCTCGCTGAT
CCGGTCTCGTCAGGCTCAGTTCGAGCTTCACCCGGACAAGGTGCTCGAGT
ATAAGGACCTCGAGGCCGGCGAGGAGGTCTGGGGCCCCAAGGTCCAGCGA
TTCCTCGAGGACTGGGAGGAGAAGCGACTGGCTCGGCCGTCGTCTCCGCG
TTCCCCGAAACAAAATTAG back to topCoding sequence (CDS) from alignment at ch7:2046017..2047485- >KJC3_010001-T1 ID=KJC3_010001-T1|Name=KJC3_010001-T1|organism=Aspergillus niger KJC3|type=CDS|length=2490bp|location=Sequence derived from alignment at ch7:2046017..2047485- (Aspergillus niger KJC3)
CCGTCCACAAACCCCAAGGCGTCTCCTCCGCCGACGTCGTCCGCACCCTC
CAAACGCACTTCAACCCCTCCACGCTCTTCGCCCCCTGGCTCGCTGACGA
GCGCGCCCGTCGCGCCCGCGAAAGCACCTACCAGCGCAAGCGCCGCCGCA
CCCAGCGTCTCGACGTGAAGATCGGCCACGGAGGCACCCTCGACCCCCTC
GCGACCGGCATTCTCGTCGCGGGAGTCGGCAAGGGCACGAAACACCTGAA
CGAGTTCCTAGGATGCACGAAGCAATATGAGACCGTTGTGCTGTTCGGCG
CCGAGACAGATACCTATGATCGGCTGGGGAAGGTGGTGCGCAAGGCGCCC
TACGAGCATGTGACAAGGGAGATGGTGGAGAAGGCACTGGAGCAGTTCCG
TGGGAAGATTATGCAGAGGCCGCCAATTTTCTCGGCGCTGAAGGTGAATG
GCAAGAAGCTTTATGAGTATGCCCGCGAGGGCAAGGAGCCGCCGATTGAG
ATCCAGAAGAGGCCGGTCGAGGTGACGGATTTGAGGATTGTCGAGTGGTA
CGAGCCTGGAACGCATGAGTTTAAGTGGCCTGAGGTTGAGGCAGACGGGG
AGGAGAAGGCTGTTGCGGAGAAGTTGTTGGCGAAGGAGGATGAGTTGCCG
ATTGTGGAGAGGGAGGCGGATGGTGAAGGAGAGGCCTCTGCGAAGAGAAA
GTCCCCGCCTGCGGAGGATGCTAAGGAGGAGAAGGTAGAGGGTGGTGATA
CTGAGTCTGCTCCCTCGGCTAAGAAGCAGAAGGTTGCTGATGGCGAGGCT
GCGCCTGTTGCGCCGGCCGAGCAGGAGGCGTCGGATGCTCCCAATGCTGA
AGCCGTGGAATCCTCGGAATCCAAGCCCCAGTCCCAGCCCCAGCCGGCTG
CGGTGAAGATCACCATGACGGTGTCATCTGGCTTCTATGTGCGCTCCTTG
GCGCACGATCTGGGCAAGGCGGTCGGAAGCTGCGGGCTGATGTCCTCGCT
GATCCGGTCTCGTCAGGCTCAGTTCGAGCTTCACCCGGACAAGGTGCTCG
AGTATAAGGACCTCGAGGCCGGCGAGGAGGTCTGGGGCCCCAAGGTCCAG
CGATTCCTCGAGGACTGGGAGGAGAAGCGACTGGCTCGGCCGTCGTCTCC
GCGTTCCCCGAAACAAAATTAGATGAGCTTCCGTCAAGCCCTCAGACCCT
TCCGTCGCACCATGTCCGGTGAAAAGATCTACGAAGGCGTATTCGCCGTC
CACAAACCCCAAGGCGTCTCCTCCGCCGACGTCGTCCGCACCCTCCAAAC
GCACTTCAACCCCTCCACGCTCTTCGCCCCCTGGCTCGCTGACGAGCGCG
CCCGTCGCGCCCGCGAAAGCACCTACCAGCGCAAGCGCCGCCGCACCCAG
CGTCTCGACGTGAAGATCGGCCACGGAGGCACCCTCGACCCCCTCGCGAC
CGGCATTCTCGTCGCGGGAGTCGGCAAGGGCACGAAACACCTGAACGAGT
TCCTAGGATGCACGAAGCAATATGAGACCGTTGTGCTGTTCGGCGCCGAG
ACAGATACCTATGATCGGCTGGGGAAGGTGGTGCGCAAGGCGCCCTACGA
GCATGTGACAAGGGAGATGGTGGAGAAGGCACTGGAGCAGTTCCGTGGGA
AGATTATGCAGAGGCCGCCAATTTTCTCGGCGCTGAAGGTGAATGGCAAG
AAGCTTTATGAGTATGCCCGCGAGGGCAAGGAGCCGCCGATTGAGATCCA
GAAGAGGCCGGTCGAGGTGACGGATTTGAGGATTGTCGAGTGGTACGAGC
CTGGAACGCATGAGTTTAAGTGGCCTGAGGTTGAGGCAGACGGGGAGGAG
AAGGCTGTTGCGGAGAAGTTGTTGGCGAAGGAGGATGAGTTGCCGATTGT
GGAGAGGGAGGCGGATGGTGAAGGAGAGGCCTCTGCGAAGAGAAAGTCCC
CGCCTGCGGAGGATGCTAAGGAGGAGAAGGTAGAGGGTGGTGATACTGAG
TCTGCTCCCTCGGCTAAGAAGCAGAAGGTTGCTGATGGCGAGGCTGCGCC
TGTTGCGCCGGCCGAGCAGGAGGCGTCGGATGCTCCCAATGCTGAAGCCG
TGGAATCCTCGGAATCCAAGCCCCAGTCCCAGCCCCAGCCGGCTGCGGTG
AAGATCACCATGACGGTGTCATCTGGCTTCTATGTGCGCTCCTTGGCGCA
CGATCTGGGCAAGGCGGTCGGAAGCTGCGGGCTGATGTCCTCGCTGATCC
GGTCTCGTCAGGCTCAGTTCGAGCTTCACCCGGACAAGGTGCTCGAGTAT
AAGGACCTCGAGGCCGGCGAGGAGGTCTGGGGCCCCAAGGTCCAGCGATT
CCTCGAGGACTGGGAGGAGAAGCGACTGGCTCGGCCGTCGTCTCCGCGTT
CCCCGAAACAAAATTAGATGAGCTTCCGTCAAGCCCTCAGACCCTTCCGT
CGCACCATGTCCGGTGAAAAGATCTACGAAGGCGTATTCG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
| GO:0009982 | pseudouridine synthase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0001522 | pseudouridine synthesis |
| GO:0009451 | RNA modification |
| GO:0006396 | RNA processing |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010001-T1.utr5p1 | KJC3_010001-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264HU0 |
| DBxref | InterPro:IPR020103 |
| DBxref | InterPro:IPR014780 |
| DBxref | InterPro:IPR002501 |
| DBxref | PFAM:PF01509 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:2046017..2047485 - |
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