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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:2786255..2789252- Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_010235-T1 ID=KJC3_010235-T1|Name=KJC3_010235-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2998bp|location=Sequence derived from alignment at ch7:2786255..2789252- (Aspergillus niger KJC3)
CTGCGGACATCACGACTGACAGCTCATTCTTTCCTCGGTGGACTGCAAAG
GAACATGACGGACCCTGTTGTCTTGCAGTCGGCGGTGCGAGTGCCTACTC
CGCCCCCAGGCACTTCCTACTCTCCTCAGGCCTCGGGTTCCCGCAAACGC
TCACCTCCCTCTCGGTCTCCTTCGCCGAATCGTCGTCGCTCGCCCCCGGG
TGATTCACTAAAAGACGGTGCGGATGCACCGCGCATCGATCCTGAACGCG
CGATTGAAAGAGAGCGACAGCTCGCCGAGCGCCTTCGCCAACATGAGAAG
CAGGAGGCTGCTCGAAAGCCAATGACGGAGGAGGAAAAGCAGGCTGCGGC
TAAAGCAGAATATGAGAAGCTTTTGAACATGCGATCGGGTGGTACCTATA
TTCCTCCTGCGCGACTACGGGCGCTGCAGGCGCAGATTACGGACAAGACC
AGCAAGGAGTACCAGCGGATGGCATGGGAGGCTCTTAAGAAGTCGATCAA
CGGTCTCATCAACAAGGTCAACGTTTCCAACATCAAGTTTATCGTCCCGG
AGCTTTTTGGGGAGAACTTGGTGCGCGGTCGCGGTCTGTTTTGCAGAAGT
ATCATGAAAGCTCAGGCGGCCAGTTTGCCCTTCACACCTATCTACGCCGC
CATGGCGGCTATTGTGAACACCAAACTGCCCCAAGTCGGCGAGCTGTTGC
TCAACCGTCTCATTGTCCAGTTCCGAAAGGCGTTCAAGAGAAACGACAAG
GCAGTCTGCATATCTTCCACGACCTTCATTGCCCATCTGTGCAACCAGCA
GGTCGCGCACGAGATGCTGGCCGCGCAGATTCTTCTTTTGCTGCTTCACA
AGCCCACGGATGACAGTGTCGAGATTGCTGTCGGCCTGACTCGAGAGGTT
GGTCAGCATCTGGAGGAGATGAGCGGTCCTATTGCCCTGGCGGTGTTTGA
TCAATTCCGAAATATCCTTCACGAAGCCGACATCGACAAGCGAGTACAGT
ATATGATTGAGGTGTTGTTCCAGGTCCGGAAAGATAGGTATAAGGACAAC
CCGGCGATCAAGGAAGAATTGGACCTGATCGAGGAGGAAGACCAAATAAC
GCATCAGATCGGACTCGATGACGAGATTGAGACACAAGATTCCCTCAATA
TCTTCAAGTACGATGCCGAATGGGAGGAGCACGAAGAGGCCTACAAGAAA
TTGAAGGCAGAGATTCTGGGTGAAGGAAGTGATGACGAGGAGGACGACGA
AGACGAGTCAGACGAGAGCTCCGATGAAGAGTCGGAGGAAGAGCGGAAGA
TGGACATTAAAGACCAGACCAACACAGACCTCGTGAACCTGCGGAGGACG
ATATACCTGACGATCATGTCGAGTATCGATTTCGAAGAATGCTGTCACAA
GCTGATGAAGATCTCGCTGCCCGCTGGCCTCGAGCCCGAGCTCCCGTCAA
TGATCATCGAGTGTTGCTCCCAGGAGCGCACGTATTCGAAGTTCTACGGC
TTGATCGGAGAGCGCTTCGCAAAGATCAACCGGCTCTGGTCCGATCTCTT
CGAAGCTGCATTTGCCAAGTACTACGACACCATCCATCGCTACGAGACAA
ACCGACTCCGCAATATTGCCCGCTTCTTCGGCCATATGATTAGCAATGAC
GCGATTGGCTGGCATGTCATGTCGATCATCCACATGAACGAGGAGGAGAC
GACATCAAGCAGCCGTATCTTCATCAAGATCCTCTTCCAAGACCTCGGAG
AACACCTGGGCCTGCCCAAACTGCAGGAACGCATGCGGGACGAGATCCTG
CGTCCCAGCTTCGAGGGCCTCTTCCCACTGGACAATCCCCGCAACACGCG
CTTCTCAATCAACTACTTCACCAGTATCGGCATGGGTATGCTGACGGAGG
ACATGCGCGAGCACCTAAAAAACCTCCCCAAGCCCACGATGCCTGCATTG
CCCCAACGCGATGCCGGCGCCGACTCCGACTCCGAGTCCGTGGTATCTCA
CCCAACCAGCTGCTCAACCTGTACTCCTCGCTCTCGCTCCCGCTCCCGCT
CCTACTCCTACTCCCGCTCTCCTTCCCCCGGCCGTGGCCGCAGACGCTCC
GTCAGCCGCGGCCGATCCTACAGCCGCTCCGTGTCCGGATCCTCACGCCG
CAGCTACAGCTACACCCCTTCGCGGTCCAGGTCCCGATCCCCGGCGCCCA
AATCCCGCCGACGCTCCGTCTCATACAGTCGATCCCCCCGCAGAAGATCC
TCCGTGTCCCCAACACCCCCTCCTCGCCGGACACGCGATCGCTCCTACGA
TTCCCGCTCTCCCAGACGCTCGCTCTCCCGGTCCGTCACCCCTCCGCCTC
GCAGCAAGCGAGATACCCACGCCCGCCGAGACAGAAGCTACTCCAGATCC
GTCTCCCGATCTGTCTCCCCTCCTCCACGTCAGGCTGCCGGAGGTGCCGC
TCGGTACTCGGAGTCTCCTCCTCCCCGCCGGCGGGTCGAAAGGAGCGTCT
CCGCGTCTCGCTCTCCTTCCCGTTCTCGTTCTCGTACTCCGGAGCGTCGT
GCCCCGCCTGGTCGTCGTGCCCCCCGTGATGCTTCAGTCTCGCGCTCGCG
CTCCCCTACCCCGCCGCGCGGTGGTGGTCGTCGTGGCGATGCTGCCCCTC
GTCGTCGTCGCTACTCTGACTCGTTGTCTCCGTCGCGGTCTCCGCCGCCG
AGACGGCACAGGTCTCCGTCTAGAACGCCTCCCCGTCGGGTGCGCGATTA
GGGTGGGAATAGGATGTATGTAATAGGTGATAGGGAGAGAGAGAAGAGTG
CTTTTAGATGAAATTTTTTGCAGGGTATATGTTTAGGTTTGGCATTGGTT
GTTCTATACCGGATTGAAACCAAGATTTTCCAAGTTCAAGGAAGGGGTTC
TTTATTTTATATTAAATTAAGGATGTATTGATATATACTCATTTCGCCTG
GATGTATTGCAAACGGACACGAAAGTATATCATCAGTATACAAGTAAG back to topCoding sequence (CDS) from alignment at ch7:2786255..2789252- >KJC3_010235-T1 ID=KJC3_010235-T1|Name=KJC3_010235-T1|organism=Aspergillus niger KJC3|type=CDS|length=2697bp|location=Sequence derived from alignment at ch7:2786255..2789252- (Aspergillus niger KJC3)
ATGACGGACCCTGTTGTCTTGCAGTCGGCGGTGCGAGTGCCTACTCCGCC
CCCAGGCACTTCCTACTCTCCTCAGGCCTCGGGTTCCCGCAAACGCTCAC
CTCCCTCTCGGTCTCCTTCGCCGAATCGTCGTCGCTCGCCCCCGGGTGAT
TCACTAAAAGACGGTGCGGATGCACCGCGCATCGATCCTGAACGCGCGAT
TGAAAGAGAGCGACAGCTCGCCGAGCGCCTTCGCCAACATGAGAAGCAGG
AGGCTGCTCGAAAGCCAATGACGGAGGAGGAAAAGCAGGCTGCGGCTAAA
GCAGAATATGAGAAGCTTTTGAACATGCGATCGGGTGGTACCTATATTCC
TCCTGCGCGACTACGGGCGCTGCAGGCGCAGATTACGGACAAGACCAGCA
AGGAGTACCAGCGGATGGCATGGGAGGCTCTTAAGAAGTCGATCAACGGT
CTCATCAACAAGGTCAACGTTTCCAACATCAAGTTTATCGTCCCGGAGCT
TTTTGGGGAGAACTTGGTGCGCGGTCGCGGTCTGTTTTGCAGAAGTATCA
TGAAAGCTCAGGCGGCCAGTTTGCCCTTCACACCTATCTACGCCGCCATG
GCGGCTATTGTGAACACCAAACTGCCCCAAGTCGGCGAGCTGTTGCTCAA
CCGTCTCATTGTCCAGTTCCGAAAGGCGTTCAAGAGAAACGACAAGGCAG
TCTGCATATCTTCCACGACCTTCATTGCCCATCTGTGCAACCAGCAGGTC
GCGCACGAGATGCTGGCCGCGCAGATTCTTCTTTTGCTGCTTCACAAGCC
CACGGATGACAGTGTCGAGATTGCTGTCGGCCTGACTCGAGAGGTTGGTC
AGCATCTGGAGGAGATGAGCGGTCCTATTGCCCTGGCGGTGTTTGATCAA
TTCCGAAATATCCTTCACGAAGCCGACATCGACAAGCGAGTACAGTATAT
GATTGAGGTGTTGTTCCAGGTCCGGAAAGATAGGTATAAGGACAACCCGG
CGATCAAGGAAGAATTGGACCTGATCGAGGAGGAAGACCAAATAACGCAT
CAGATCGGACTCGATGACGAGATTGAGACACAAGATTCCCTCAATATCTT
CAAGTACGATGCCGAATGGGAGGAGCACGAAGAGGCCTACAAGAAATTGA
AGGCAGAGATTCTGGGTGAAGGAAGTGATGACGAGGAGGACGACGAAGAC
GAGTCAGACGAGAGCTCCGATGAAGAGTCGGAGGAAGAGCGGAAGATGGA
CATTAAAGACCAGACCAACACAGACCTCGTGAACCTGCGGAGGACGATAT
ACCTGACGATCATGTCGAGTATCGATTTCGAAGAATGCTGTCACAAGCTG
ATGAAGATCTCGCTGCCCGCTGGCCTCGAGCCCGAGCTCCCGTCAATGAT
CATCGAGTGTTGCTCCCAGGAGCGCACGTATTCGAAGTTCTACGGCTTGA
TCGGAGAGCGCTTCGCAAAGATCAACCGGCTCTGGTCCGATCTCTTCGAA
GCTGCATTTGCCAAGTACTACGACACCATCCATCGCTACGAGACAAACCG
ACTCCGCAATATTGCCCGCTTCTTCGGCCATATGATTAGCAATGACGCGA
TTGGCTGGCATGTCATGTCGATCATCCACATGAACGAGGAGGAGACGACA
TCAAGCAGCCGTATCTTCATCAAGATCCTCTTCCAAGACCTCGGAGAACA
CCTGGGCCTGCCCAAACTGCAGGAACGCATGCGGGACGAGATCCTGCGTC
CCAGCTTCGAGGGCCTCTTCCCACTGGACAATCCCCGCAACACGCGCTTC
TCAATCAACTACTTCACCAGTATCGGCATGGGTATGCTGACGGAGGACAT
GCGCGAGCACCTAAAAAACCTCCCCAAGCCCACGATGCCTGCATTGCCCC
AACGCGATGCCGGCGCCGACTCCGACTCCGAGTCCGTGGTATCTCACCCA
ACCAGCTGCTCAACCTGTACTCCTCGCTCTCGCTCCCGCTCCCGCTCCTA
CTCCTACTCCCGCTCTCCTTCCCCCGGCCGTGGCCGCAGACGCTCCGTCA
GCCGCGGCCGATCCTACAGCCGCTCCGTGTCCGGATCCTCACGCCGCAGC
TACAGCTACACCCCTTCGCGGTCCAGGTCCCGATCCCCGGCGCCCAAATC
CCGCCGACGCTCCGTCTCATACAGTCGATCCCCCCGCAGAAGATCCTCCG
TGTCCCCAACACCCCCTCCTCGCCGGACACGCGATCGCTCCTACGATTCC
CGCTCTCCCAGACGCTCGCTCTCCCGGTCCGTCACCCCTCCGCCTCGCAG
CAAGCGAGATACCCACGCCCGCCGAGACAGAAGCTACTCCAGATCCGTCT
CCCGATCTGTCTCCCCTCCTCCACGTCAGGCTGCCGGAGGTGCCGCTCGG
TACTCGGAGTCTCCTCCTCCCCGCCGGCGGGTCGAAAGGAGCGTCTCCGC
GTCTCGCTCTCCTTCCCGTTCTCGTTCTCGTACTCCGGAGCGTCGTGCCC
CGCCTGGTCGTCGTGCCCCCCGTGATGCTTCAGTCTCGCGCTCGCGCTCC
CCTACCCCGCCGCGCGGTGGTGGTCGTCGTGGCGATGCTGCCCCTCGTCG
TCGTCGCTACTCTGACTCGTTGTCTCCGTCGCGGTCTCCGCCGCCGAGAC
GGCACAGGTCTCCGTCTAGAACGCCTCCCCGTCGGGTGCGCGATTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010235-T1.utr3p1 | KJC3_010235-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010235-T1.utr5p1 | KJC3_010235-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09263WM5 |
| DBxref | InterPro:IPR016024 |
| DBxref | InterPro:IPR016021 |
| DBxref | InterPro:IPR003890 |
| DBxref | InterPro:IPR003891 |
| DBxref | PFAM:PF02847 |
| Product | pre-mRNA-splicing factor cwc22 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:2786255..2789252 - |
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