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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:3891009..3891955+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_010622-T1 ID=KJC3_010622-T1|Name=KJC3_010622-T1|organism=Aspergillus niger KJC3|type=mRNA|length=947bp|location=Sequence derived from alignment at ch7:3891009..3891955+ (Aspergillus niger KJC3)
CCAAAACCACCAGCCCTCGCTGAGTGAAATACGATTTGCCTGGAGTATAG
CAAATGGGCCCTCCAAGAGTAAAGTTTCTGGTCGAGGAGGGAGCCGACAT
GGAAGCCGTTGATCAAGAAGGGAATACTGTGCGTCTCCATGCTCTTGAGA
ACCGTCACATGGACGTAGTCAGTCTCTTTCTTGACATCGACTTGGCAAAT
GATCGGTGCAAGATTGGGTCCGTGCTACTCTCCGCAGTTGAGGATGATGA
CCCTGAGCTGGTCAGCCTTCTAATCAACAAGGATATTGACCCGAACTCAA
GTTGCAAGACGGGCATTGGCCGCGATGATTGTACAGTTCTCACTTGGGCC
GCCAAGAAAGGATACACAGAGCTGGTGCAGCACCTTATCCACTACGGTGC
AGACGTCAATTTGCGGGGTAACGAATGTTGGACTCCACTTGCTCGGGCTG
CACAATATGGTCATGATGCTGTCGTCAAACTACTAATTGAGCACAACGCC
TATATTGATTTTCCTAACGATAATTTCACGCCTCTTCAAATCGCTGCAGC
CAACGCGAACCAGAGCACGGTCAAACTTCTCGTTCAGCATGGAGCGTGTG
TCGCGCACTTGGATCTGACTCCCGATTCGCTGTTGAAAAGATCTAGCCTT
GGATATTACGAAATGAAGCATTAAGTTCACGGGGATCTACAATAGAAACG
AGGGATTCTGAGGGACGGACACCTTTGATTTGTGCCGCAGAAAAGGGTGA
TGTTGCCAGGGTCAGATTCTTGGTCATGCACGGTGCTGTCATTGATGCGA
AAGCTACAAGTGGTCGTACAGCACTCTTGCAAGCGGCTGCACGAGGCCAC
TACGCAGTGGTCAAGATACTGCTGAAGTTTGGAGCCGATCAGACAGTACG
TGATGATGATGGCGCAGATGCTGTTGCTTTGGCTGTTAATGAGGGCC back to topCoding sequence (CDS) from alignment at ch7:3891009..3891955+ >KJC3_010622-T1 ID=KJC3_010622-T1|Name=KJC3_010622-T1|organism=Aspergillus niger KJC3|type=CDS|length=621bp|location=Sequence derived from alignment at ch7:3891009..3891955+ (Aspergillus niger KJC3)
ATGGGCCCTCCAAGAGTAAAGTTTCTGGTCGAGGAGGGAGCCGACATGGA
AGCCGTTGATCAAGAAGGGAATACTGTGCGTCTCCATGCTCTTGAGAACC
GTCACATGGACGTAGTCAGTCTCTTTCTTGACATCGACTTGGCAAATGAT
CGGTGCAAGATTGGGTCCGTGCTACTCTCCGCAGTTGAGGATGATGACCC
TGAGCTGGTCAGCCTTCTAATCAACAAGGATATTGACCCGAACTCAAGTT
GCAAGACGGGCATTGGCCGCGATGATTGTACAGTTCTCACTTGGGCCGCC
AAGAAAGGATACACAGAGCTGGTGCAGCACCTTATCCACTACGGTGCAGA
CGTCAATTTGCGGGGTAACGAATGTTGGACTCCACTTGCTCGGGCTGCAC
AATATGGTCATGATGCTGTCGTCAAACTACTAATTGAGCACAACGCCTAT
ATTGATTTTCCTAACGATAATTTCACGCCTCTTCAAATCGCTGCAGCCAA
CGCGAACCAGAGCACGGTCAAACTTCTCGTTCAGCATGGAGCGTGTGTCG
CGCACTTGGATCTGACTCCCGATTCGCTGTTGAAAAGATCTAGCCTTGGA
TATTACGAAATGAAGCATTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010622-T1.utr5p1 | KJC3_010622-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010622-T1.utr3p1 | KJC3_010622-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036770 |
| DBxref | InterPro:IPR020683 |
| DBxref | InterPro:IPR002110 |
| DBxref | PFAM:PF13857 |
| DBxref | PFAM:PF13637 |
| DBxref | PFAM:PF12796 |
| DBxref | PFAM:PF00023 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:3891009..3891955 + |
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