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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:3942420..3945696- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_010637-T1 ID=KJC3_010637-T1|Name=KJC3_010637-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3277bp|location=Sequence derived from alignment at ch7:3942420..3945696- (Aspergillus niger KJC3)
CTCCCCTCCACTTGCGATTTGCTCCATGGGTTGGTGTTCTTGATTGTGCG
TGTTATGGAGGCTCATGTCTTACATTCTTAAATAGACAGTGGCGCTTGCG
CAATCTTTCTCTTTCAATTCGTCTGTCAAGTCGTGTGTTTTGCTCTCGCC
AGACATATGGAGCATCCATGATTTCATCGGCTGCTTGATTTCTTCTCCAT
TATCTCTCTTTTCTGCGTGATACCCAGCCTTTGTTTGCTACTTCATACAC
TTTGTATATTTCCTAGTCGAGGTGGATAGATCTACTTTTTCTCTGTGGCT
CTTATACAGCCTTCAATAACCATTATGGCGACCCCATCGTCCAAGCCAAA
CCCAGGAGCGACTCCGACGCATCTGACCTCGTCGCCTCGTCCGTCTGGTG
CTCATATGGCCCGCCCGATTTCTCACAAATCGCCGTCAACGAGGACGCCT
TCAGCTTCCGGTCATGGACACAACCAACCCCCCACTTCGATGCACCAATA
TTCTACCCCTCTCGCTGTGACTACCGGAGCGGAGGACCCCGTTACGTTCA
GTTCCCCGTCCGCTCTCCTCGCGCTTGGTGGCTACAGCGGAATCAGTCCG
TCCCCCGCCGGGCACGATGGGCTTGTCGGCGCAGGCATGAACGAGAATGA
TATCCAGGCATTGGGCATGCCGGGTCTGAAGCTCGGGGGTGCTCGCGACA
GCGAGGAGGAGCGCAGAAGACATATCGACGATGTGGTCCAGCTTCTACGA
GCCCGAGTCTCGGGGCGGGGCGTTTGCAGAGAGGGTATTGAGCGGCTGAG
TGATCTCGAAGGGTTCGAGTCGATCTGGCAGGAGGACAGTCTCAGCATTG
CGGGGAACTTTGTCGACCTGGAGATCGACTTCCATCGGGGGTATAATGTG
GTGAAGGACGTTAGCTTGAAGTATGCGACGCCCGATGCGCAGGATGGGGA
ACAGCGCGACGAGGCTACGGCGGTGCTTAAGCGCGACCTGATCCAGTCGC
CGGAGGAAGGAGACCGGGGTGCTTGGAAGTCGTTGCGGGGGTTCCATGAG
AATCTACAGTGGCTTGCCAAACATGATCGGCTTAGTCAGGAGGTCAATTG
TTTCGAGGCCATCGAAGGTCTTTACGAGAGCTTGAAGCGCGTGTGGGAGG
CGGAGTGGAACCATCGCAAGTTCGCGGGGGTGTACGACCATCTTTGCAGT
GGCTGGGTTGGCCAGCCGTGTATGCACAAGGGGAGTCGCATTGGTCTCAG
CTTGGATTACTGGGTGCAGCAAGCACGGGTTCTGGATGCGAAGGAGAAGC
AGAAGACGTCGTCTGATGCGATGGTGGTTGATGCACCGAATGGACAACCG
TCGGATGATGATTCGAGCAGCTTGGAAGGGAAATGGAGCATTGTGGTGGA
GTGCGAAGAGGGTTACCCATCCCTCCGTGTGTCGAAGGACTGGGTTGGAT
CCGAAGTGTTAACTGGGGTCAATAACAATGACAATGGGCCGTCGTCGAGT
GAGGCGCATGGGTCTGAAGCTGCAGTTGTCAACTGGGTTGATCCTCCGGC
GACGTTGACCAACAACCAAGGTCACCCGGACGCCATGGCACTTGACTCGA
ATATGCTGGGTTCTTCTGCTCCTAATCGTCGCTTCGTTGCTAAGTTGGAG
CCGGCCTTGGATCTACCTATTTTGGCAGCATCTGATATCTACCGGCACCT
TGGAATGCAACTGCCGCAGGAGTTCAAAATGGTTACCTACGATGGACTCC
TGGCCCCAGGCTGGTCGCCTTTGTCGGCAGCAGGGGCTATGGGACTGGGG
CCAGAGGAGGCCTCTCAGCTTGAGCGGAGGAGACGCAGAATGTCGGTGCA
ATCGGTTGACAGTACGGGCAAACCGTGTACGAAGCATCACAGCTACACGT
TCCAGCCGTTTGAGTCTGTAGCTGGCCGAACAATGAGAGATATCCCATTC
GCACATCCCCGGCAACTCGCAGATATCCTTCCGGTATGATTCGGAGACTC
ATGTTGTGTGTCGAGGTTACTGACATATTCTTCTAGATCCTTCGCCAGTA
TGCCTTTCTGGCCAACCTGATCCGCAGCATTTTCAGCTCTTCATACAAGC
CCGATGAGGACAAATCCGCCACGCCGGCTGATTCTTCAAATATCTCATTT
AGCCCACCCAAATTTACTGATGGGAAGACGAAGAAAGATGTCATCATTCT
GAGCAATGCCGACCCGAATGAGAAGAGACTCGATGCATTGTTGGGAGGCT
TCGAGAAATTAGCAACTTCGCCGGGTGCTAAGGGTAAAGGCCCTGTGGGG
GTAGGAAACGAGAATTCGGGCCCCAATTCTACTGTTGACAACGATGTCAA
GGTAGACGTAACGTTGCGGACGCAACTGGGACAAGCACCAGTGATCATGC
TACTTTTCGCAGTGGATCAACCAGACGAAGCGTCGGAATCCGCCAACGCG
GAGGCGGCACTGACGAAGGTGTCCATTAGTCTGGAAGTTGGACTAAACGG
TCGGGTCTCCGTTGTGGACATGACCGGTCTGCTAGATGACAACAACACTA
CCACCACGGACAGCATGGAAGACACCCCAGAGAAGAAGGCTCTCGAGTTG
CAAAGCAAAATAGCAAATGTGCTGGAATTGTCACAGGATATTGGGATCTT
GGTGGAATGGATTTTACGATGGGCGCGGCAGCGGAAGGGCCGCTGAGACT
TGCCGCTGATTCTATGACAATGAGGGGAAGGGATACGCATCATCCACTGC
GTCGGAAGTGGAGAGCGATCGATCTCGTCCATCGGTCTAAGCGGTGACGC
AAGCTGGGATATCCTCGACCAGGAGTCGCACTAATTCAGACGTGGGGACT
TGCCGAAGATTCGACCGATGTTCTGGAAGCAGACTCGGCCCATTTTTTCT
TGGATCACGGTCTGTGCAGTATCTGCATAGGAAGAATGCTAGAGGCTGTC
ATACACCAGTTGATCCTAAACCAGCCCGACCTGTAACACCCGATTCTAAA
CCAGCTGATATGGACTGGGGCATGTGAAAGGAATCTTAAGCTTAATAGGA
TACAGTCCTGTGCAACTACTGGGAAAGGGCCATGTGTTTGACCGAGGTGA
CCCTGTGGGTGTGGAGCTAGAGCCGAGGGAACTTGACTAGCAGTGGAATG
ACAGTCAAAAACAAACAATAACAACAAGCAGCTCACGGAAAAATAGTACT
AGTAAGACAGCAGGAGAAATGAAATGTACAGTATGCCAGACCATAGGCAC
AAAAATACAAACACCTAACTGTCAGAA back to topCoding sequence (CDS) from alignment at ch7:3942420..3945696- >KJC3_010637-T1 ID=KJC3_010637-T1|Name=KJC3_010637-T1|organism=Aspergillus niger KJC3|type=CDS|length=4638bp|location=Sequence derived from alignment at ch7:3942420..3945696- (Aspergillus niger KJC3)
ATCCTTCGCCAGTATGCCTTTCTGGCCAACCTGATCCGCAGCATTTTCAG
CTCTTCATACAAGCCCGATGAGGACAAATCCGCCACGCCGGCTGATTCTT
CAAATATCTCATTTAGCCCACCCAAATTTACTGATGGGAAGACGAAGAAA
GATGTCATCATTCTGAGCAATGCCGACCCGAATGAGAAGAGACTCGATGC
ATTGTTGGGAGGCTTCGAGAAATTAGCAACTTCGCCGGGTGCTAAGGGTA
AAGGCCCTGTGGGGGTAGGAAACGAGAATTCGGGCCCCAATTCTACTGTT
GACAACGATGTCAAGGTAGACGTAACGTTGCGGACGCAACTGGGACAAGC
ACCAGTGATCATGCTACTTTTCGCAGTGGATCAACCAGACGAAGCGTCGG
AATCCGCCAACGCGGAGGCGGCACTGACGAAGGTGTCCATTAGTCTGGAA
GTTGGACTAAACGGTCGGGTCTCCGTTGTGGACATGACCGGTCTGCTAGA
TGACAACAACACTACCACCACGGACAGCATGGAAGACACCCCAGAGAAGA
AGGCTCTCGAGTTGCAAAGCAAAATAGCAAATGTGCTGGAATTGTCACAG
GATATTGGGATCTTGGTGGAATGGATTTTACGATGGGCGCGGCAGCGGAA
GGGCCGCTGAATGGCGACCCCATCGTCCAAGCCAAACCCAGGAGCGACTC
CGACGCATCTGACCTCGTCGCCTCGTCCGTCTGGTGCTCATATGGCCCGC
CCGATTTCTCACAAATCGCCGTCAACGAGGACGCCTTCAGCTTCCGGTCA
TGGACACAACCAACCCCCCACTTCGATGCACCAATATTCTACCCCTCTCG
CTGTGACTACCGGAGCGGAGGACCCCGTTACGTTCAGTTCCCCGTCCGCT
CTCCTCGCGCTTGGTGGCTACAGCGGAATCAGTCCGTCCCCCGCCGGGCA
CGATGGGCTTGTCGGCGCAGGCATGAACGAGAATGATATCCAGGCATTGG
GCATGCCGGGTCTGAAGCTCGGGGGTGCTCGCGACAGCGAGGAGGAGCGC
AGAAGACATATCGACGATGTGGTCCAGCTTCTACGAGCCCGAGTCTCGGG
GCGGGGCGTTTGCAGAGAGGGTATTGAGCGGCTGAGTGATCTCGAAGGGT
TCGAGTCGATCTGGCAGGAGGACAGTCTCAGCATTGCGGGGAACTTTGTC
GACCTGGAGATCGACTTCCATCGGGGGTATAATGTGGTGAAGGACGTTAG
CTTGAAGTATGCGACGCCCGATGCGCAGGATGGGGAACAGCGCGACGAGG
CTACGGCGGTGCTTAAGCGCGACCTGATCCAGTCGCCGGAGGAAGGAGAC
CGGGGTGCTTGGAAGTCGTTGCGGGGGTTCCATGAGAATCTACAGTGGCT
TGCCAAACATGATCGGCTTAGTCAGGAGGTCAATTGTTTCGAGGCCATCG
AAGGTCTTTACGAGAGCTTGAAGCGCGTGTGGGAGGCGGAGTGGAACCAT
CGCAAGTTCGCGGGGGTGTACGACCATCTTTGCAGTGGCTGGGTTGGCCA
GCCGTGTATGCACAAGGGGAGTCGCATTGGTCTCAGCTTGGATTACTGGG
TGCAGCAAGCACGGGTTCTGGATGCGAAGGAGAAGCAGAAGACGTCGTCT
GATGCGATGGTGGTTGATGCACCGAATGGACAACCGTCGGATGATGATTC
GAGCAGCTTGGAAGGGAAATGGAGCATTGTGGTGGAGTGCGAAGAGGGTT
ACCCATCCCTCCGTGTGTCGAAGGACTGGGTTGGATCCGAAGTGTTAACT
GGGGTCAATAACAATGACAATGGGCCGTCGTCGAGTGAGGCGCATGGGTC
TGAAGCTGCAGTTGTCAACTGGGTTGATCCTCCGGCGACGTTGACCAACA
ACCAAGGTCACCCGGACGCCATGGCACTTGACTCGAATATGCTGGGTTCT
TCTGCTCCTAATCGTCGCTTCGTTGCTAAGTTGGAGCCGGCCTTGGATCT
ACCTATTTTGGCAGCATCTGATATCTACCGGCACCTTGGAATGCAACTGC
CGCAGGAGTTCAAAATGGTTACCTACGATGGACTCCTGGCCCCAGGCTGG
TCGCCTTTGTCGGCAGCAGGGGCTATGGGACTGGGGCCAGAGGAGGCCTC
TCAGCTTGAGCGGAGGAGACGCAGAATGTCGGTGCAATCGGTTGACAGTA
CGGGCAAACCGTGTACGAAGCATCACAGCTACACGTTCCAGCCGTTTGAG
TCTGTAGCTGGCCGAACAATGAGAGATATCCCATTCGCACATCCCCGGCA
ACTCGCAGATATCCTTCCGATCCTTCGCCAGTATGCCTTTCTGGCCAACC
TGATCCGCAGCATTTTCAGCTCTTCATACAAGCCCGATGAGGACAAATCC
GCCACGCCGGCTGATTCTTCAAATATCTCATTTAGCCCACCCAAATTTAC
TGATGGGAAGACGAAGAAAGATGTCATCATTCTGAGCAATGCCGACCCGA
ATGAGAAGAGACTCGATGCATTGTTGGGAGGCTTCGAGAAATTAGCAACT
TCGCCGGGTGCTAAGGGTAAAGGCCCTGTGGGGGTAGGAAACGAGAATTC
GGGCCCCAATTCTACTGTTGACAACGATGTCAAGGTAGACGTAACGTTGC
GGACGCAACTGGGACAAGCACCAGTGATCATGCTACTTTTCGCAGTGGAT
CAACCAGACGAAGCGTCGGAATCCGCCAACGCGGAGGCGGCACTGACGAA
GGTGTCCATTAGTCTGGAAGTTGGACTAAACGGTCGGGTCTCCGTTGTGG
ACATGACCGGTCTGCTAGATGACAACAACACTACCACCACGGACAGCATG
GAAGACACCCCAGAGAAGAAGGCTCTCGAGTTGCAAAGCAAAATAGCAAA
TGTGCTGGAATTGTCACAGGATATTGGGATCTTGGTGGAATGGATTTTAC
GATGGGCGCGGCAGCGGAAGGGCCGCTGAATGGCGACCCCATCGTCCAAG
CCAAACCCAGGAGCGACTCCGACGCATCTGACCTCGTCGCCTCGTCCGTC
TGGTGCTCATATGGCCCGCCCGATTTCTCACAAATCGCCGTCAACGAGGA
CGCCTTCAGCTTCCGGTCATGGACACAACCAACCCCCCACTTCGATGCAC
CAATATTCTACCCCTCTCGCTGTGACTACCGGAGCGGAGGACCCCGTTAC
GTTCAGTTCCCCGTCCGCTCTCCTCGCGCTTGGTGGCTACAGCGGAATCA
GTCCGTCCCCCGCCGGGCACGATGGGCTTGTCGGCGCAGGCATGAACGAG
AATGATATCCAGGCATTGGGCATGCCGGGTCTGAAGCTCGGGGGTGCTCG
CGACAGCGAGGAGGAGCGCAGAAGACATATCGACGATGTGGTCCAGCTTC
TACGAGCCCGAGTCTCGGGGCGGGGCGTTTGCAGAGAGGGTATTGAGCGG
CTGAGTGATCTCGAAGGGTTCGAGTCGATCTGGCAGGAGGACAGTCTCAG
CATTGCGGGGAACTTTGTCGACCTGGAGATCGACTTCCATCGGGGGTATA
ATGTGGTGAAGGACGTTAGCTTGAAGTATGCGACGCCCGATGCGCAGGAT
GGGGAACAGCGCGACGAGGCTACGGCGGTGCTTAAGCGCGACCTGATCCA
GTCGCCGGAGGAAGGAGACCGGGGTGCTTGGAAGTCGTTGCGGGGGTTCC
ATGAGAATCTACAGTGGCTTGCCAAACATGATCGGCTTAGTCAGGAGGTC
AATTGTTTCGAGGCCATCGAAGGTCTTTACGAGAGCTTGAAGCGCGTGTG
GGAGGCGGAGTGGAACCATCGCAAGTTCGCGGGGGTGTACGACCATCTTT
GCAGTGGCTGGGTTGGCCAGCCGTGTATGCACAAGGGGAGTCGCATTGGT
CTCAGCTTGGATTACTGGGTGCAGCAAGCACGGGTTCTGGATGCGAAGGA
GAAGCAGAAGACGTCGTCTGATGCGATGGTGGTTGATGCACCGAATGGAC
AACCGTCGGATGATGATTCGAGCAGCTTGGAAGGGAAATGGAGCATTGTG
GTGGAGTGCGAAGAGGGTTACCCATCCCTCCGTGTGTCGAAGGACTGGGT
TGGATCCGAAGTGTTAACTGGGGTCAATAACAATGACAATGGGCCGTCGT
CGAGTGAGGCGCATGGGTCTGAAGCTGCAGTTGTCAACTGGGTTGATCCT
CCGGCGACGTTGACCAACAACCAAGGTCACCCGGACGCCATGGCACTTGA
CTCGAATATGCTGGGTTCTTCTGCTCCTAATCGTCGCTTCGTTGCTAAGT
TGGAGCCGGCCTTGGATCTACCTATTTTGGCAGCATCTGATATCTACCGG
CACCTTGGAATGCAACTGCCGCAGGAGTTCAAAATGGTTACCTACGATGG
ACTCCTGGCCCCAGGCTGGTCGCCTTTGTCGGCAGCAGGGGCTATGGGAC
TGGGGCCAGAGGAGGCCTCTCAGCTTGAGCGGAGGAGACGCAGAATGTCG
GTGCAATCGGTTGACAGTACGGGCAAACCGTGTACGAAGCATCACAGCTA
CACGTTCCAGCCGTTTGAGTCTGTAGCTGGCCGAACAATGAGAGATATCC
CATTCGCACATCCCCGGCAACTCGCAGATATCCTTCCG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016592 | mediator complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006357 | regulation of transcription by RNA polymerase II |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003712 | transcription coregulator activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010637-T1.utr3p1 | KJC3_010637-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010637-T1.utr5p1 | KJC3_010637-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR019680 |
| DBxref | PFAM:PF10744 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:3942420..3945696 - |
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