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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:4889227..4891819+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_010987-T1 ID=KJC3_010987-T1|Name=KJC3_010987-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2593bp|location=Sequence derived from alignment at ch7:4889227..4891819+ (Aspergillus niger KJC3)
CTTGAGGACCGACCGGCATCTTTTTGGATTCGAAAAGGGTCTGGATCACA
AGACGCGCTGATTCTAGCCCAATTGTCGCATTGCGCAGTCCAGTTCCTTT
GGTAATTCGGTAGTCATTTCCTTCCTTTCTCTCGAGGAAAGCGACTGTTC
ACAATGGAGCCGACAACCGCTCAGGAACAGCTGCCCGCTCCAGAGGCTAA
TGCGCCCAAGCGTGATCCGGAGAATGGCGATGCCGCTGCAGACCACCAGG
CCCAGGAGCCACCCTCGAAGAAAGCCAGACTCGATGATTCGGCGGATTCT
AACGGACAGACGGCTGATGCGCCCGCCCCGCGTATGAAGGGCGTTGCTCC
TATCAAGCCCGAGTATGTGATTGATCTAAATCTGTTTGCGATGCGCCCGC
TCTAACCGACTTCCTCTGCTAGGTTTATTATCGACCAACAACCCACGAGA
GGCCAGACCGCTTCCGATGCCAATGCTGACGATGCTGCGGAAGCTGCACA
CCACGACGGGCGCGCCGATGAGCAGAATGGAAAGAAGAAAAAGAAGAAGA
CTGGTCAGAATACGAACCGCACGTTTGGTCGATCCGAGGATGCGAAAGGA
TTGTGCTCTAGTGTCAACTTCAGGCCTGAATTTTCTCCTGCCGAGTGCAC
TTTCGGTGAAAAGTGTCGGTACGAGCATGACCTGCGCACATACTTGAAGG
AGCATAAGCGGGAAGATCTTACGACGTTCAATGGCATGTGTCCTGTCTGG
GATGTCCACGGAAAGTGCTTCGTGGGCTGGAAATGTCGTTTTGTCGGTTC
ACACTCGGAGGAGCGAGAGACTGCCGATGGAAGGAAAGAGTTGGTTCTTA
TTGAGGATGAGGAGCGCAAGAAGAAGGTTCAGCGGCTTGTTCCCTTTGCT
GGAGAGGATGGGGCTGTGAATGTTGCTTCGATGGAGGATAAGATTGCCTT
GGCGAGGAGGAAGATGGACTTCCCAAGAGCTGGGCCGTATAGTGCTTGGC
TGGAAAACACATCCAGGACCATTGAGAAGGAGCTCCACAAACGGCATCGT
GCTGCGCCCGTAGGAGCTGAAACCAAGGATGGAGAGTCTAAGGATGCAGA
ATCTAAGGATGCAGATAGCAAGGACGAAAAGGAGGAGAACCGGGCTATGT
ACGTTGAGCCGCCATTCATGCCATCAGAGAAGCGCCGACTGTACTTTGGA
CCCGAAACACCGGCACTGGCGCCTTTGACTACCCAAGGCAATATGCCTTT
CCGAAGACTTTGCGTCGAGCTTGGCGCACAATTTACCTATTCTGAGATGG
CCATGAGCTTGCCCTTGATCCAGGGTAACAAGTCGGAGTGGGCCTTAATG
CGAGCCCATGAGTCGGAGATGCTCCCTCCCACGATGCTGCCCGGGGCAGA
CATCGTGCAGGGCTATGACAACTCCAAGGACATGAAGTTTGGTGCTCAGA
TTGCAGCAAACAAGCCCTGGCAGGCGTTCAAGGCTACAGAGGCGCTGGCT
AAAGTTACTCCAAACCTGCGTGTCATCGATCTGAACTGTGGCTGCCCGAT
TGACCTCGTCTTCAAGGATGGTGCTGGCTCTGCTCTTCTGGAGCACCCGT
CGAAGCTCGAGAAGATCATTCGTGGCATGAACACTGTTTCGGATCAGATT
CCTATCACGGTCAAGATCCGTATGGGAACGAAGGACAACAATCCGAACGC
CTTGAAACTGACGGAGCGTTTGCTGCTTGGGGGCTACGAAACCAGTCTGC
TTCATCACGACGGCGCCGCAGGTGCAGCGGCTATCACTCTTCACGGCCGT
AGCAGACAGCAGCGTTACACCAGACAAGCTGATTGGGAATACATCTCCGA
ATGTGCCGCCTTGATCAAGCGCCTGAACGAGAAGACTGACGCGGTGACGG
ATACCATCCGGGAGCCTGACGCCCGGACGCAGCCAAACGGCGGGAAGGTT
TACTTCCTGGGTAACGGTGACTGCTATTCTCATGTTGACTACGATAACCA
CATCAACAATGCTGGCGTTGATGCTGTTATGCTTGGTCGCGGTCCTCTGA
TCAAGCCTTGGCTGTTCGAGGAAATTCAGGCGGGCCAGTACCTTGACAAG
TCTGCTACGGAACGTTTGGCAATGATTGAGAAGTTCTGTAAGTATGGTCT
GGAGGCATGGGGATCCGATGAGCACGGTGTTGGTACGACTAGACGCTTCT
TGATGGAATGGCTGAGCTTCACTCGTCGCTATGTACCTATCGGGTTGCTC
GAGCATCTTCCCCCCTACATCAACGACCGGCCCCCGGCTTTCAGAGGCCG
GAATGAGCTTGAGACACTGCTGGCCAGTGCCAACTACAAGGATTGGCTCA
AGATCTCGTAAGTACCTTCTCCTGACCGGCTCACTCTTTCGAACTCATTC
TAACAGCCTTCTAGGGAGATGTTCCTCGGACCGGCTCATAAGGACTTCAA
GTTCGAGCCCAAGCACAAGTCCAACTCGTATGACGAAGCGGAGGGTTAAA
CACACGCTGTCTAGATTAGGATTAACGCATAGAGACGATGTACATACCAC
AGCTAGCAATCATATGCAATGAGAACTACACACTTTAGATAAA back to topCoding sequence (CDS) from alignment at ch7:4889227..4891819+ >KJC3_010987-T1 ID=KJC3_010987-T1|Name=KJC3_010987-T1|organism=Aspergillus niger KJC3|type=CDS|length=6687bp|location=Sequence derived from alignment at ch7:4889227..4891819+ (Aspergillus niger KJC3)
ATGGAGCCGACAACCGCTCAGGAACAGCTGCCCGCTCCAGAGGCTAATGC
GCCCAAGCGTGATCCGGAGAATGGCGATGCCGCTGCAGACCACCAGGCCC
AGGAGCCACCCTCGAAGAAAGCCAGACTCGATGATTCGGCGGATTCTAAC
GGACAGACGGCTGATGCGCCCGCCCCGCGTATGAAGGGCGTTGCTCCTAT
CAAGCCCGAGTTTATTATCGACCAACAACCCACGAGAGGCCAGACCGCTT
CCGATGCCAATGCTGACGATGCTGCGGAAGCTGCACACCACGACGGGCGC
GCCGATGAGCAGAATGGAAAGAAGAAAAAGAAGAAGACTGGTCAGAATAC
GAACCGCACGTTTGGTCGATCCGAGGATGCGAAAGGATTGTGCTCTAGTG
TCAACTTCAGGCCTGAATTTTCTCCTGCCGAGTGCACTTTCGGTGAAAAG
TGTCGGTACGAGCATGACCTGCGCACATACTTGAAGGAGCATAAGCGGGA
AGATCTTACGACGTTCAATGGCATGTGTCCTGTCTGGGATGTCCACGGAA
AGTGCTTCGTGGGCTGGAAATGTCGTTTTGTCGGTTCACACTCGGAGGAG
CGAGAGACTGCCGATGGAAGGAAAGAGTTGGTTCTTATTGAGGATGAGGA
GCGCAAGAAGAAGGTTCAGCGGCTTGTTCCCTTTGCTGGAGAGGATGGGG
CTGTGAATGTTGCTTCGATGGAGGATAAGATTGCCTTGGCGAGGAGGAAG
ATGGACTTCCCAAGAGCTGGGCCGTATAGTGCTTGGCTGGAAAACACATC
CAGGACCATTGAGAAGGAGCTCCACAAACGGCATCGTGCTGCGCCCGTAG
GAGCTGAAACCAAGGATGGAGAGTCTAAGGATGCAGAATCTAAGGATGCA
GATAGCAAGGACGAAAAGGAGGAGAACCGGGCTATGTACGTTGAGCCGCC
ATTCATGCCATCAGAGAAGCGCCGACTGTACTTTGGACCCGAAACACCGG
CACTGGCGCCTTTGACTACCCAAGGCAATATGCCTTTCCGAAGACTTTGC
GTCGAGCTTGGCGCACAATTTACCTATTCTGAGATGGCCATGAGCTTGCC
CTTGATCCAGGGTAACAAGTCGGAGTGGGCCTTAATGCGAGCCCATGAGT
CGGAGATGCTCCCTCCCACGATGCTGCCCGGGGCAGACATCGTGCAGGGC
TATGACAACTCCAAGGACATGAAGTTTGGTGCTCAGATTGCAGCAAACAA
GCCCTGGCAGGCGTTCAAGGCTACAGAGGCGCTGGCTAAAGTTACTCCAA
ACCTGCGTGTCATCGATCTGAACTGTGGCTGCCCGATTGACCTCGTCTTC
AAGGATGGTGCTGGCTCTGCTCTTCTGGAGCACCCGTCGAAGCTCGAGAA
GATCATTCGTGGCATGAACACTGTTTCGGATCAGATTCCTATCACGGTCA
AGATCCGTATGGGAACGAAGGACAACAATCCGAACGCCTTGAAACTGACG
GAGCGTTTGCTGCTTGGGGGCTACGAAACCAGTCTGCTTCATCACGACGG
CGCCGCAGGTGCAGCGGCTATCACTCTTCACGGCCGTAGCAGACAGCAGC
GTTACACCAGACAAGCTGATTGGGAATACATCTCCGAATGTGCCGCCTTG
ATCAAGCGCCTGAACGAGAAGACTGACGCGGTGACGGATACCATCCGGGA
GCCTGACGCCCGGACGCAGCCAAACGGCGGGAAGGTTTACTTCCTGGGTA
ACGGTGACTGCTATTCTCATGTTGACTACGATAACCACATCAACAATGCT
GGCGTTGATGCTGTTATGCTTGGTCGCGGTCCTCTGATCAAGCCTTGGCT
GTTCGAGGAAATTCAGGCGGGCCAGTACCTTGACAAGTCTGCTACGGAAC
GTTTGGCAATGATTGAGAAGTTCTGTAAGTATGGTCTGGAGGCATGGGGA
TCCGATGAGCACGGTGTTGGTACGACTAGACGCTTCTTGATGGAATGGCT
GAGCTTCACTCGTCGCTATGTACCTATCGGGTTGCTCGAGCATCTTCCCC
CCTACATCAACGACCGGCCCCCGGCTTTCAGAGGCCGGAATGAGCTTGAG
ACACTGCTGGCCAGTGCCAACTACAAGGATTGGCTCAAGATCTCGGAGAT
GTTCCTCGGACCGGCTCATAAGGACTTCAAGTTCGAGCCCAAGCACAAGT
CCAACTCGTATGACGAAGCGGAGGGTTAAATGGAGCCGACAACCGCTCAG
GAACAGCTGCCCGCTCCAGAGGCTAATGCGCCCAAGCGTGATCCGGAGAA
TGGCGATGCCGCTGCAGACCACCAGGCCCAGGAGCCACCCTCGAAGAAAG
CCAGACTCGATGATTCGGCGGATTCTAACGGACAGACGGCTGATGCGCCC
GCCCCGCGTATGAAGGGCGTTGCTCCTATCAAGCCCGAGTTTATTATCGA
CCAACAACCCACGAGAGGCCAGACCGCTTCCGATGCCAATGCTGACGATG
CTGCGGAAGCTGCACACCACGACGGGCGCGCCGATGAGCAGAATGGAAAG
AAGAAAAAGAAGAAGACTGGTCAGAATACGAACCGCACGTTTGGTCGATC
CGAGGATGCGAAAGGATTGTGCTCTAGTGTCAACTTCAGGCCTGAATTTT
CTCCTGCCGAGTGCACTTTCGGTGAAAAGTGTCGGTACGAGCATGACCTG
CGCACATACTTGAAGGAGCATAAGCGGGAAGATCTTACGACGTTCAATGG
CATGTGTCCTGTCTGGGATGTCCACGGAAAGTGCTTCGTGGGCTGGAAAT
GTCGTTTTGTCGGTTCACACTCGGAGGAGCGAGAGACTGCCGATGGAAGG
AAAGAGTTGGTTCTTATTGAGGATGAGGAGCGCAAGAAGAAGGTTCAGCG
GCTTGTTCCCTTTGCTGGAGAGGATGGGGCTGTGAATGTTGCTTCGATGG
AGGATAAGATTGCCTTGGCGAGGAGGAAGATGGACTTCCCAAGAGCTGGG
CCGTATAGTGCTTGGCTGGAAAACACATCCAGGACCATTGAGAAGGAGCT
CCACAAACGGCATCGTGCTGCGCCCGTAGGAGCTGAAACCAAGGATGGAG
AGTCTAAGGATGCAGAATCTAAGGATGCAGATAGCAAGGACGAAAAGGAG
GAGAACCGGGCTATGTACGTTGAGCCGCCATTCATGCCATCAGAGAAGCG
CCGACTGTACTTTGGACCCGAAACACCGGCACTGGCGCCTTTGACTACCC
AAGGCAATATGCCTTTCCGAAGACTTTGCGTCGAGCTTGGCGCACAATTT
ACCTATTCTGAGATGGCCATGAGCTTGCCCTTGATCCAGGGTAACAAGTC
GGAGTGGGCCTTAATGCGAGCCCATGAGTCGGAGATGCTCCCTCCCACGA
TGCTGCCCGGGGCAGACATCGTGCAGGGCTATGACAACTCCAAGGACATG
AAGTTTGGTGCTCAGATTGCAGCAAACAAGCCCTGGCAGGCGTTCAAGGC
TACAGAGGCGCTGGCTAAAGTTACTCCAAACCTGCGTGTCATCGATCTGA
ACTGTGGCTGCCCGATTGACCTCGTCTTCAAGGATGGTGCTGGCTCTGCT
CTTCTGGAGCACCCGTCGAAGCTCGAGAAGATCATTCGTGGCATGAACAC
TGTTTCGGATCAGATTCCTATCACGGTCAAGATCCGTATGGGAACGAAGG
ACAACAATCCGAACGCCTTGAAACTGACGGAGCGTTTGCTGCTTGGGGGC
TACGAAACCAGTCTGCTTCATCACGACGGCGCCGCAGGTGCAGCGGCTAT
CACTCTTCACGGCCGTAGCAGACAGCAGCGTTACACCAGACAAGCTGATT
GGGAATACATCTCCGAATGTGCCGCCTTGATCAAGCGCCTGAACGAGAAG
ACTGACGCGGTGACGGATACCATCCGGGAGCCTGACGCCCGGACGCAGCC
AAACGGCGGGAAGGTTTACTTCCTGGGTAACGGTGACTGCTATTCTCATG
TTGACTACGATAACCACATCAACAATGCTGGCGTTGATGCTGTTATGCTT
GGTCGCGGTCCTCTGATCAAGCCTTGGCTGTTCGAGGAAATTCAGGCGGG
CCAGTACCTTGACAAGTCTGCTACGGAACGTTTGGCAATGATTGAGAAGT
TCTGTAAGTATGGTCTGGAGGCATGGGGATCCGATGAGCACGGTGTTGGT
ACGACTAGACGCTTCTTGATGGAATGGCTGAGCTTCACTCGTCGCTATGT
ACCTATCGGGTTGCTCGAGCATCTTCCCCCCTACATCAACGACCGGCCCC
CGGCTTTCAGAGGCCGGAATGAGCTTGAGACACTGCTGGCCAGTGCCAAC
TACAAGGATTGGCTCAAGATCTCGGAGATGTTCCTCGGACCGGCTCATAA
GGACTTCAAGTTCGAGCCCAAGCACAAGTCCAACTCGTATGACGAAGCGG
AGGGTTAAATGGAGCCGACAACCGCTCAGGAACAGCTGCCCGCTCCAGAG
GCTAATGCGCCCAAGCGTGATCCGGAGAATGGCGATGCCGCTGCAGACCA
CCAGGCCCAGGAGCCACCCTCGAAGAAAGCCAGACTCGATGATTCGGCGG
ATTCTAACGGACAGACGGCTGATGCGCCCGCCCCGCGTATGAAGGGCGTT
GCTCCTATCAAGCCCGAGTTTATTATCGACCAACAACCCACGAGAGGCCA
GACCGCTTCCGATGCCAATGCTGACGATGCTGCGGAAGCTGCACACCACG
ACGGGCGCGCCGATGAGCAGAATGGAAAGAAGAAAAAGAAGAAGACTGGT
CAGAATACGAACCGCACGTTTGGTCGATCCGAGGATGCGAAAGGATTGTG
CTCTAGTGTCAACTTCAGGCCTGAATTTTCTCCTGCCGAGTGCACTTTCG
GTGAAAAGTGTCGGTACGAGCATGACCTGCGCACATACTTGAAGGAGCAT
AAGCGGGAAGATCTTACGACGTTCAATGGCATGTGTCCTGTCTGGGATGT
CCACGGAAAGTGCTTCGTGGGCTGGAAATGTCGTTTTGTCGGTTCACACT
CGGAGGAGCGAGAGACTGCCGATGGAAGGAAAGAGTTGGTTCTTATTGAG
GATGAGGAGCGCAAGAAGAAGGTTCAGCGGCTTGTTCCCTTTGCTGGAGA
GGATGGGGCTGTGAATGTTGCTTCGATGGAGGATAAGATTGCCTTGGCGA
GGAGGAAGATGGACTTCCCAAGAGCTGGGCCGTATAGTGCTTGGCTGGAA
AACACATCCAGGACCATTGAGAAGGAGCTCCACAAACGGCATCGTGCTGC
GCCCGTAGGAGCTGAAACCAAGGATGGAGAGTCTAAGGATGCAGAATCTA
AGGATGCAGATAGCAAGGACGAAAAGGAGGAGAACCGGGCTATGTACGTT
GAGCCGCCATTCATGCCATCAGAGAAGCGCCGACTGTACTTTGGACCCGA
AACACCGGCACTGGCGCCTTTGACTACCCAAGGCAATATGCCTTTCCGAA
GACTTTGCGTCGAGCTTGGCGCACAATTTACCTATTCTGAGATGGCCATG
AGCTTGCCCTTGATCCAGGGTAACAAGTCGGAGTGGGCCTTAATGCGAGC
CCATGAGTCGGAGATGCTCCCTCCCACGATGCTGCCCGGGGCAGACATCG
TGCAGGGCTATGACAACTCCAAGGACATGAAGTTTGGTGCTCAGATTGCA
GCAAACAAGCCCTGGCAGGCGTTCAAGGCTACAGAGGCGCTGGCTAAAGT
TACTCCAAACCTGCGTGTCATCGATCTGAACTGTGGCTGCCCGATTGACC
TCGTCTTCAAGGATGGTGCTGGCTCTGCTCTTCTGGAGCACCCGTCGAAG
CTCGAGAAGATCATTCGTGGCATGAACACTGTTTCGGATCAGATTCCTAT
CACGGTCAAGATCCGTATGGGAACGAAGGACAACAATCCGAACGCCTTGA
AACTGACGGAGCGTTTGCTGCTTGGGGGCTACGAAACCAGTCTGCTTCAT
CACGACGGCGCCGCAGGTGCAGCGGCTATCACTCTTCACGGCCGTAGCAG
ACAGCAGCGTTACACCAGACAAGCTGATTGGGAATACATCTCCGAATGTG
CCGCCTTGATCAAGCGCCTGAACGAGAAGACTGACGCGGTGACGGATACC
ATCCGGGAGCCTGACGCCCGGACGCAGCCAAACGGCGGGAAGGTTTACTT
CCTGGGTAACGGTGACTGCTATTCTCATGTTGACTACGATAACCACATCA
ACAATGCTGGCGTTGATGCTGTTATGCTTGGTCGCGGTCCTCTGATCAAG
CCTTGGCTGTTCGAGGAAATTCAGGCGGGCCAGTACCTTGACAAGTCTGC
TACGGAACGTTTGGCAATGATTGAGAAGTTCTGTAAGTATGGTCTGGAGG
CATGGGGATCCGATGAGCACGGTGTTGGTACGACTAGACGCTTCTTGATG
GAATGGCTGAGCTTCACTCGTCGCTATGTACCTATCGGGTTGCTCGAGCA
TCTTCCCCCCTACATCAACGACCGGCCCCCGGCTTTCAGAGGCCGGAATG
AGCTTGAGACACTGCTGGCCAGTGCCAACTACAAGGATTGGCTCAAGATC
TCGGAGATGTTCCTCGGACCGGCTCATAAGGACTTCAAGTTCGAGCCCAA
GCACAAGTCCAACTCGTATGACGAAGCGGAGGGTTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
| GO:0003824 | catalytic activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0017150 | tRNA dihydrouridine synthase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
| GO:0008033 | tRNA processing |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010987-T1.utr5p1 | KJC3_010987-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010987-T1.utr3p1 | KJC3_010987-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09261ZPW |
| DBxref | InterPro:IPR035587 |
| DBxref | InterPro:IPR000571 |
| DBxref | InterPro:IPR018517 |
| DBxref | InterPro:IPR013785 |
| DBxref | InterPro:IPR001269 |
| DBxref | PFAM:PF01207 |
| Product | tRNA-dihydrouridine synthase 3 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:4889227..4891819 + |
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