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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:4975048..4977896+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011014-T1 ID=KJC3_011014-T1|Name=KJC3_011014-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2849bp|location=Sequence derived from alignment at ch7:4975048..4977896+ (Aspergillus niger KJC3)
CCAACATACATAACATACCCATTGAATTGGAACATAGGGAGGAGAGTGTT
CTTTCCTTTTTATAACTCATTAACTTGTTTTGCTACATTTTATTTCACGC
AACCCAATTCACAAGAAAGGAAGAAATCTCTTGTTCCTTCCCTTTCCCCC
CACACGCCAACCATGGCCGGAACGAAAAAGCGCGCGAACGCCGACGACGA
CTTCGTGCTCACATTGTCGGACGATGAGAATGACACGTTAAATCAGCTCG
AAGAGGAGGGCGAGGGCGACGATGGTGCGCTAGCCACGGGATCGAAAACG
AAGAAGCGCAAGAGAGATGATGCTGCGGCGGCGCAGCAGGAGAAGGGGAA
GAACAAGAAGGTGAAGAAGCAGGAACAACAGCAACAACAAGCACAACAGA
AGAAAAAGAAGGGAAAGAATGCCCCTGTTCAGGAGGAAGAGGATGAGGAT
GAAGAGGAGGAAGAGGATCAGGGTGAAGATGATGGCGCGCTTAATTCGGA
TTTCGAGTTCGATGTCGGCGGTGCTGCGAATGAGGTTAGGGATTTCGATG
GGTGGGAGGTTAATGGTAATGAGGAGGGTAAGGGTGGGGATAAGAAGGCT
GTGGATATCGATGATATTATTTCGAGGAGGCAGGCGAAGAAGGAGGCTGA
GTTGATTCGCAAGCAGAAGAAGAAGCAGAAGCAAGAGGAGGAGTTTAGTG
AATTGGAGGATGATGATGAGGAGGATGGTGGTATGGAGGTCGACTTTGGG
GATGATGAGCTGCTTGCGGAGGATGGGTTCGGTATGGGTGTCGATGGGGA
GGAGGAGAGCGAGAAGTCCGATGCGGAGGATGAGGAGAAGGAAGAAGGGT
CTGATGAGGAGGCTGAGGGCAGTGATGAAGACGAGCAGATGGATGAGGAT
GATGACGATGCTGCTTCGGATGACGACTCGGTTGCTACTCCTGTCATGCA
CCCGGATGATATTGCCTCTGATCGGGACTCGGACGAGGAGAGTCAGGTCG
ACGCCGAGGAAGAGGAGAAGCGCAAGGCTTTCTTCGCGCCCGAGGAGGAA
AAGACTTCCGAGTCTGCTATGGCAGATGCGAAGCGGTCGTTCCAGGAATT
CAACCTCTCTCGTCCCATCCTTCGTGGTCTCGCCGGAGTCAACTTCTCGA
ACCCTACACCCATTCAGCGCAAGACGATCCCCGTGGCTCTCCTGGGCAAG
GATATTGTCGGTAGTGCCGTTACTGGTTCCGGAAAGACTGCCGCCTTCGT
TGTCCCGATTCTCGAACGTCTGCTGTTCCGGCCGCGCAAGGTCCCGACGA
GTCGTGTTGCCATTCTCATGCCCACCCGTGAATTGGCGGTGCAGTGCTAC
AATGTCGCTACAAAGCTGGCCACATACACGGACATCACCTTCTGTCAGCT
GGTCGGTGGTTTCAGTCTTCGCGAGCAGGAGAACATCTTGAAGAAGCGTC
CCGATGTGATCATCGCCACCCCCGGTCGTTTCATTGATCACATGCGCAAC
TCGGCCAGCTTCACCGTTGATACTCTGGAAATCCTGGTTCTGGATGAAGC
CGATCGCATGCTCGAGGACGGTTTCGCCGACGAGTTGAACGAGATTCTCA
CTACGATCCCCAAGTCGCGCCAGACCATGCTTTTCTCGGCTACGATGACG
GACACTGTCGACAAGCTCATTCGCGTCGGTCTCAACCGCCCCGTGCGCTT
GATGGTCGACGCCAAGAAGAACACGGCCGTGACACTGGTGCAGGAATTCG
TGCGTCTGCGCCCCGGACGTGAGGACAAGCGACTAGGCTACCTTCTCTAC
CTCTGCAAAGAGATCTACACCGGTCGGGTGATTGTCTTCTTCCGACAGAA
GAAGGAGGCGCACCGGGTGCGTATCATCTTCGGACTGCTGGGCTTGAAGG
CTGCCGAGCTCCACGGTAGCATGAGCCAAGAACAGGTATGTTATTTTACA
TCGACTTTCATTTTCTTCAATACGATCGATGATACTAATCGTGGGGTTTT
CCAAACTACAGCGTATCAAGAGTGTCGAGAATTTCCGTGAGGGCAAGGCG
GCGTTCCTGCTGGCTACGGATCTGGCGTCGCGTGGTCTGGATATCAAGGG
CGTTGAGACGGTCATCAACTACGAAGCGCCGCAGAGCCATGAGATCTACC
TGCATCGTGTTGGTCGTACTGCGCGTGCGGGCCGCTCCGGTCGGGCCTGC
ACCATTGCCGCCGAGCCTGACCGCAAGGTGGTCAAGGCGGCGGTGAAGGC
GGGCAAGTCGCAAGGAGCCAAGATTGCCAGCCGTGTGATTGAACCGGCGG
TGGCGGATTCCTGGGCGGCCAAGGCGGAGGAGTTGGCGGACGAGGTGGAA
GAGGTGTTGTCGGAGGAGAAGCTCGAGAAGCAGCTGGCACAGGCGGAGAT
GCAAGTGACCAAGGGAGAGAACCTGATCAAGCACGAGGCGGAGATCAAGT
CGCGGCCGAAGCGTACTTGGTTCGAGACGGAGCGCGACAAGAAGGCGGCG
CGGAAGCTGGGCGCGGCGGAGCTCAACGGGCCCGATGCCGGCATGTCCAA
GAAGGAGAAGCAGAAGCTCAGCAACAAGGACAAGAAGCGTCTGGATGATT
CCCGTCAGCGCCAGGAAGCGGGTGCTGGTTGGAAGAAGGGCCGGGCAACA
CGGGAGAGCATGAAGAATGGGCAATTGCCCAAAGCTAAGAAGGACAACAA
GAAGAAGGGCAAGAAATGAGTCACAAGGGTGAGGTGACGGGACGGACTCA
GAAGGATTTTCTAAAAAAAAATTATCATTATTCGCATTAGCATATTGTGG
ATATACTGTATAGATATATTTTTCATTTTCTGCTCAGACCATTCACGAT back to topCoding sequence (CDS) from alignment at ch7:4975048..4977896+ >KJC3_011014-T1 ID=KJC3_011014-T1|Name=KJC3_011014-T1|organism=Aspergillus niger KJC3|type=CDS|length=4962bp|location=Sequence derived from alignment at ch7:4975048..4977896+ (Aspergillus niger KJC3)
ATGGCCGGAACGAAAAAGCGCGCGAACGCCGACGACGACTTCGTGCTCAC
ATTGTCGGACGATGAGAATGACACGTTAAATCAGCTCGAAGAGGAGGGCG
AGGGCGACGATGGTGCGCTAGCCACGGGATCGAAAACGAAGAAGCGCAAG
AGAGATGATGCTGCGGCGGCGCAGCAGGAGAAGGGGAAGAACAAGAAGGT
GAAGAAGCAGGAACAACAGCAACAACAAGCACAACAGAAGAAAAAGAAGG
GAAAGAATGCCCCTGTTCAGGAGGAAGAGGATGAGGATGAAGAGGAGGAA
GAGGATCAGGGTGAAGATGATGGCGCGCTTAATTCGGATTTCGAGTTCGA
TGTCGGCGGTGCTGCGAATGAGGTTAGGGATTTCGATGGGTGGGAGGTTA
ATGGTAATGAGGAGGGTAAGGGTGGGGATAAGAAGGCTGTGGATATCGAT
GATATTATTTCGAGGAGGCAGGCGAAGAAGGAGGCTGAGTTGATTCGCAA
GCAGAAGAAGAAGCAGAAGCAAGAGGAGGAGTTTAGTGAATTGGAGGATG
ATGATGAGGAGGATGGTGGTATGGAGGTCGACTTTGGGGATGATGAGCTG
CTTGCGGAGGATGGGTTCGGTATGGGTGTCGATGGGGAGGAGGAGAGCGA
GAAGTCCGATGCGGAGGATGAGGAGAAGGAAGAAGGGTCTGATGAGGAGG
CTGAGGGCAGTGATGAAGACGAGCAGATGGATGAGGATGATGACGATGCT
GCTTCGGATGACGACTCGGTTGCTACTCCTGTCATGCACCCGGATGATAT
TGCCTCTGATCGGGACTCGGACGAGGAGAGTCAGGTCGACGCCGAGGAAG
AGGAGAAGCGCAAGGCTTTCTTCGCGCCCGAGGAGGAAAAGACTTCCGAG
TCTGCTATGGCAGATGCGAAGCGGTCGTTCCAGGAATTCAACCTCTCTCG
TCCCATCCTTCGTGGTCTCGCCGGAGTCAACTTCTCGAACCCTACACCCA
TTCAGCGCAAGACGATCCCCGTGGCTCTCCTGGGCAAGGATATTGTCGGT
AGTGCCGTTACTGGTTCCGGAAAGACTGCCGCCTTCGTTGTCCCGATTCT
CGAACGTCTGCTGTTCCGGCCGCGCAAGGTCCCGACGAGTCGTGTTGCCA
TTCTCATGCCCACCCGTGAATTGGCGGTGCAGTGCTACAATGTCGCTACA
AAGCTGGCCACATACACGGACATCACCTTCTGTCAGCTGGTCGGTGGTTT
CAGTCTTCGCGAGCAGGAGAACATCTTGAAGAAGCGTCCCGATGTGATCA
TCGCCACCCCCGGTCGTTTCATTGATCACATGCGCAACTCGGCCAGCTTC
ACCGTTGATACTCTGGAAATCCTGGTTCTGGATGAAGCCGATCGCATGCT
CGAGGACGGTTTCGCCGACGAGTTGAACGAGATTCTCACTACGATCCCCA
AGTCGCGCCAGACCATGCTTTTCTCGGCTACGATGACGGACACTGTCGAC
AAGCTCATTCGCGTCGGTCTCAACCGCCCCGTGCGCTTGATGGTCGACGC
CAAGAAGAACACGGCCGTGACACTGGTGCAGGAATTCGTGCGTCTGCGCC
CCGGACGTGAGGACAAGCGACTAGGCTACCTTCTCTACCTCTGCAAAGAG
ATCTACACCGGTCGGGTGATTGTCTTCTTCCGACAGAAGAAGGAGGCGCA
CCGGGTGCGTATCATCTTCGGACTGCTGGGCTTGAAGGCTGCCGAGCTCC
ACGGTAGCATGAGCCAAGAACAGCGTATCAAGAGTGTCGAGAATTTCCGT
GAGGGCAAGGCGGCGTTCCTGCTGGCTACGGATCTGGCGTCGCGTGGTCT
GGATATCAAGGGCGTTGAGACGGTCATCAACTACGAAGCGCCGCAGAGCC
ATGAGATCTACCTGCATCGTGTTGGTCGTACTGCGCGTGCGGGCCGCTCC
GGTCGGGCCTGCACCATTGCCGCCGAGCCTGACCGCAAGGTGGTCAAGGC
GGCGGTGAAGGCGGGCAAGTCGCAAGGAGCCAAGATTGCCAGCCGTGTGA
TTGAACCGGCGGTGGCGGATTCCTGGGCGGCCAAGGCGGAGGAGTTGGCG
GACGAGGTGGAAGAGGTGTTGTCGGAGGAGAAGCTCGAGAAGCAGCTGGC
ACAGGCGGAGATGCAAGTGACCAAGGGAGAGAACCTGATCAAGCACGAGG
CGGAGATCAAGTCGCGGCCGAAGCGTACTTGGTTCGAGACGGAGCGCGAC
AAGAAGGCGGCGCGGAAGCTGGGCGCGGCGGAGCTCAACGGGCCCGATGC
CGGCATGTCCAAGAAGGAGAAGCAGAAGCTCAGCAACAAGGACAAGAAGC
GTCTGGATGATTCCCGTCAGCGCCAGGAAGCGGGTGCTGGTTGGAAGAAG
GGCCGGGCAACACGGGAGAGCATGAAGAATGGGCAATTGCCCAAAGCTAA
GAAGGACAACAAGAAGAAGGGCAAGAAATGAATGGCCGGAACGAAAAAGC
GCGCGAACGCCGACGACGACTTCGTGCTCACATTGTCGGACGATGAGAAT
GACACGTTAAATCAGCTCGAAGAGGAGGGCGAGGGCGACGATGGTGCGCT
AGCCACGGGATCGAAAACGAAGAAGCGCAAGAGAGATGATGCTGCGGCGG
CGCAGCAGGAGAAGGGGAAGAACAAGAAGGTGAAGAAGCAGGAACAACAG
CAACAACAAGCACAACAGAAGAAAAAGAAGGGAAAGAATGCCCCTGTTCA
GGAGGAAGAGGATGAGGATGAAGAGGAGGAAGAGGATCAGGGTGAAGATG
ATGGCGCGCTTAATTCGGATTTCGAGTTCGATGTCGGCGGTGCTGCGAAT
GAGGTTAGGGATTTCGATGGGTGGGAGGTTAATGGTAATGAGGAGGGTAA
GGGTGGGGATAAGAAGGCTGTGGATATCGATGATATTATTTCGAGGAGGC
AGGCGAAGAAGGAGGCTGAGTTGATTCGCAAGCAGAAGAAGAAGCAGAAG
CAAGAGGAGGAGTTTAGTGAATTGGAGGATGATGATGAGGAGGATGGTGG
TATGGAGGTCGACTTTGGGGATGATGAGCTGCTTGCGGAGGATGGGTTCG
GTATGGGTGTCGATGGGGAGGAGGAGAGCGAGAAGTCCGATGCGGAGGAT
GAGGAGAAGGAAGAAGGGTCTGATGAGGAGGCTGAGGGCAGTGATGAAGA
CGAGCAGATGGATGAGGATGATGACGATGCTGCTTCGGATGACGACTCGG
TTGCTACTCCTGTCATGCACCCGGATGATATTGCCTCTGATCGGGACTCG
GACGAGGAGAGTCAGGTCGACGCCGAGGAAGAGGAGAAGCGCAAGGCTTT
CTTCGCGCCCGAGGAGGAAAAGACTTCCGAGTCTGCTATGGCAGATGCGA
AGCGGTCGTTCCAGGAATTCAACCTCTCTCGTCCCATCCTTCGTGGTCTC
GCCGGAGTCAACTTCTCGAACCCTACACCCATTCAGCGCAAGACGATCCC
CGTGGCTCTCCTGGGCAAGGATATTGTCGGTAGTGCCGTTACTGGTTCCG
GAAAGACTGCCGCCTTCGTTGTCCCGATTCTCGAACGTCTGCTGTTCCGG
CCGCGCAAGGTCCCGACGAGTCGTGTTGCCATTCTCATGCCCACCCGTGA
ATTGGCGGTGCAGTGCTACAATGTCGCTACAAAGCTGGCCACATACACGG
ACATCACCTTCTGTCAGCTGGTCGGTGGTTTCAGTCTTCGCGAGCAGGAG
AACATCTTGAAGAAGCGTCCCGATGTGATCATCGCCACCCCCGGTCGTTT
CATTGATCACATGCGCAACTCGGCCAGCTTCACCGTTGATACTCTGGAAA
TCCTGGTTCTGGATGAAGCCGATCGCATGCTCGAGGACGGTTTCGCCGAC
GAGTTGAACGAGATTCTCACTACGATCCCCAAGTCGCGCCAGACCATGCT
TTTCTCGGCTACGATGACGGACACTGTCGACAAGCTCATTCGCGTCGGTC
TCAACCGCCCCGTGCGCTTGATGGTCGACGCCAAGAAGAACACGGCCGTG
ACACTGGTGCAGGAATTCGTGCGTCTGCGCCCCGGACGTGAGGACAAGCG
ACTAGGCTACCTTCTCTACCTCTGCAAAGAGATCTACACCGGTCGGGTGA
TTGTCTTCTTCCGACAGAAGAAGGAGGCGCACCGGGTGCGTATCATCTTC
GGACTGCTGGGCTTGAAGGCTGCCGAGCTCCACGGTAGCATGAGCCAAGA
ACAGCGTATCAAGAGTGTCGAGAATTTCCGTGAGGGCAAGGCGGCGTTCC
TGCTGGCTACGGATCTGGCGTCGCGTGGTCTGGATATCAAGGGCGTTGAG
ACGGTCATCAACTACGAAGCGCCGCAGAGCCATGAGATCTACCTGCATCG
TGTTGGTCGTACTGCGCGTGCGGGCCGCTCCGGTCGGGCCTGCACCATTG
CCGCCGAGCCTGACCGCAAGGTGGTCAAGGCGGCGGTGAAGGCGGGCAAG
TCGCAAGGAGCCAAGATTGCCAGCCGTGTGATTGAACCGGCGGTGGCGGA
TTCCTGGGCGGCCAAGGCGGAGGAGTTGGCGGACGAGGTGGAAGAGGTGT
TGTCGGAGGAGAAGCTCGAGAAGCAGCTGGCACAGGCGGAGATGCAAGTG
ACCAAGGGAGAGAACCTGATCAAGCACGAGGCGGAGATCAAGTCGCGGCC
GAAGCGTACTTGGTTCGAGACGGAGCGCGACAAGAAGGCGGCGCGGAAGC
TGGGCGCGGCGGAGCTCAACGGGCCCGATGCCGGCATGTCCAAGAAGGAG
AAGCAGAAGCTCAGCAACAAGGACAAGAAGCGTCTGGATGATTCCCGTCA
GCGCCAGGAAGCGGGTGCTGGTTGGAAGAAGGGCCGGGCAACACGGGAGA
GCATGAAGAATGGGCAATTGCCCAAAGCTAAGAAGGACAACAAGAAGAAG
GGCAAGAAATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005524 | ATP binding |
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011014-T1.utr5p1 | KJC3_011014-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011014-T1.utr3p1 | KJC3_011014-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_7.12 |
| Note | SMCOG1122:ATP-dependent RNA helicase |
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR014014 |
| DBxref | InterPro:IPR000629 |
| DBxref | InterPro:IPR011545 |
| DBxref | InterPro:IPR001650 |
| DBxref | InterPro:IPR014001 |
| DBxref | PFAM:PF00271 |
| DBxref | PFAM:PF00270 |
| Product | nucleolar DEAD-box protein required for synthesis of 60S ribosomal subunit |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:4975048..4977896 + |
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