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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:5226310..5227537+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011098-T1 ID=KJC3_011098-T1|Name=KJC3_011098-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1228bp|location=Sequence derived from alignment at ch7:5226310..5227537+ (Aspergillus niger KJC3)
CCCGCTGCTGTTTTCTACTCCTACACTCGATCTTACCGACGTCGTCGACA
CATCCCTCGAGGTATGTATCAATCGTTATTTCGCCCTATTCTACAGCCTC
CCAGCTAGTCTGAGGAAGCAATCACCATGGAAATCCGCATATTCGGCCTT
GCTGGTGTAGTATCCGACAGCAGAGGATAATCGGAGGACCGGGTGATACG
CTTTCCTCACTACGGCACGGGCTGAAGAACCCTTGTTTATGCAAAAGGGG
CACTCTTTGCGCTCGAGGACTACTGGTGGCTGACTATTATGGACCCAATT
CCTCACCGGTGGTGTGAGGACTGGGCATCGTAAATTTTAGATACCTCATA
TCCTTCGATTCCTCGATTTGAGAATCTCGATTCCACACCGTCAAAATGGT
CAAGACTTCCGTCCTCAACGATGCGCTTAACGCCATCAACAACGCCGAGA
AGAGCGGTCGCCGTCAGGTCCTGATCCGCCCTTCCTCCAAGGTCATCATC
AAGTTCCTTTCCGTCATGCAGAAGCACGGTACGTTCATGTCTACAACATC
ACCAACATCGTGAAACAAGGAGTTCCGGGCACTTGCAAGGTCGAGCCGCC
AAGGAGGTGATGAAAAATTCGGGTTGATAACTAGGCGACGGTTATAGACC
AACCACGGCTTTCGCCCTTTAAGTGCCCGAGATATTGACAAGTGTTGTTT
ACAACATGGCGGCGATCTTACAAGTTTCCGGAACTCTTTATTTCTTCTGT
GTTTGGTTAACTTTTAAATCACCGCAACAAATTGCTGACTCTTTTTTCCT
TCTTCAGGCTACATTGGCGAGTTCGAGGAGGTTGACGACCACCGCTCCGG
CAAGATCGTCATCCAGCTCAACGGCCGTCTGAACAAGTGCGGTGTCATCA
ACCCCCGCTACCCCGTTCAGCTCCGTGACCTCGAGAAGTGGGCCACTCAG
CTCCTGCCCTCCCGTCAGTTCGGTTACGTTGTCCTGACCACCTCCGCTGG
TATCATGGACCACGAGGAGGCTCGCCGCAAGCACGTTGCCGGCAAGCTCC
TCGGTTTCTTCTACTAAAAAGTTTACCCTGGAAGCTTTTTTTTGATGGCG
AGGATCTAGTTTGTGGTGCGAGGGATGAACTCTCGTGGCTTGGCGGAGTT
GGATCGATACCCGGCAGAGATGTCTAGATAGTTATTGATCGAGTGATCTT
GCGAATGAACTGATTCAAGTCATCATTA back to topCoding sequence (CDS) from alignment at ch7:5226310..5227537+ >KJC3_011098-T1 ID=KJC3_011098-T1|Name=KJC3_011098-T1|organism=Aspergillus niger KJC3|type=CDS|length=786bp|location=Sequence derived from alignment at ch7:5226310..5227537+ (Aspergillus niger KJC3)
ATGGTCAAGACTTCCGTCCTCAACGATGCGCTTAACGCCATCAACAACGC
CGAGAAGAGCGGTCGCCGTCAGGTCCTGATCCGCCCTTCCTCCAAGGTCA
TCATCAAGTTCCTTTCCGTCATGCAGAAGCACGGCTACATTGGCGAGTTC
GAGGAGGTTGACGACCACCGCTCCGGCAAGATCGTCATCCAGCTCAACGG
CCGTCTGAACAAGTGCGGTGTCATCAACCCCCGCTACCCCGTTCAGCTCC
GTGACCTCGAGAAGTGGGCCACTCAGCTCCTGCCCTCCCGTCAGTTCGGT
TACGTTGTCCTGACCACCTCCGCTGGTATCATGGACCACGAGGAGGCTCG
CCGCAAGCACGTTGCCGGCAAGCTCCTCGGTTTCTTCTACTAAATGGTCA
AGACTTCCGTCCTCAACGATGCGCTTAACGCCATCAACAACGCCGAGAAG
AGCGGTCGCCGTCAGGTCCTGATCCGCCCTTCCTCCAAGGTCATCATCAA
GTTCCTTTCCGTCATGCAGAAGCACGGCTACATTGGCGAGTTCGAGGAGG
TTGACGACCACCGCTCCGGCAAGATCGTCATCCAGCTCAACGGCCGTCTG
AACAAGTGCGGTGTCATCAACCCCCGCTACCCCGTTCAGCTCCGTGACCT
CGAGAAGTGGGCCACTCAGCTCCTGCCCTCCCGTCAGTTCGGTTACGTTG
TCCTGACCACCTCCGCTGGTATCATGGACCACGAGGAGGCTCGCCGCAAG
CACGTTGCCGGCAAGCTCCTCGGTTTCTTCTACTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011098-T1.utr3p1 | KJC3_011098-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR035987 |
| DBxref | InterPro:IPR000630 |
| DBxref | PFAM:PF00410 |
| Product | 40S ribosomal protein S22 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:5226310..5227537 + |
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