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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:64659..65284- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011217-T1 ID=KJC3_011217-T1|Name=KJC3_011217-T1|organism=Aspergillus niger KJC3|type=mRNA|length=626bp|location=Sequence derived from alignment at ch8:64659..65284- (Aspergillus niger KJC3)
CAGGTATTCTACGATTATGACGACTAGCGAGCATTTAATTCGCTTCGACA
CTTATGTCAAGCGGCATCCGTCCCTCACCGTGGAGGAATTTCACCAGTAA
GCTTGGCTCTGAGTTCATCCACAACTACCTACATTGGCGAGGTTTTGCTG
ACATCTTCACTCTTTTCCCACCGTCACAAGCACTTGGACCACTAGTCACG
CGCAGTTGTTGAAAACTTGGTTGGCACGGCATGGGGTCTACCGCTATACT
CTGGTATGTTCCTTCAAAGACTCATGTCAAGTAATGCTTGAAAGCTCTGC
TGTTGCTGACATCCTTCCTTCAACCAGTTCCACACCCCGCCGGATGTAGC
CAAGCAGTACCTAGGTCAGGAGCACGCCGGTGGTGGTCACGTGATGGAGT
CGTTTGATGGACATGCGGAGATTCTGTTGGAGAGTTGGGACATTCTGGGC
CGCCTGCGCGCAGATCCATACTATGTGGAGGTAGTGGAGCCAAGCGAGGT
CACATTGATTGACAAGGCCTCCGTTGTCAGAAGGGTGGGATATGAGGAGG
TCTGGGTTGCGGAAGGCAAGGTTGTCGACCAAACCAAGTTCGCCCATCCA
GACTCAAGTCATACCTGACTCTGGCC back to topCoding sequence (CDS) from alignment at ch8:64659..65284- >KJC3_011217-T1 ID=KJC3_011217-T1|Name=KJC3_011217-T1|organism=Aspergillus niger KJC3|type=CDS|length=1332bp|location=Sequence derived from alignment at ch8:64659..65284- (Aspergillus niger KJC3)
TTCCACACCCCGCCGGATGTAGCCAAGCAGTACCTAGGTCAGGAGCACGC
CGGTGGTGGTCACGTGATGGAGTCGTTTGATGGACATGCGGAGATTCTGT
TGGAGAGTTGGGACATTCTGGGCCGCCTGCGCGCAGATCCATACTATGTG
GAGGTAGTGGAGCCAAGCGAGGTCACATTGATTGACAAGGCCTCCGTTGT
CAGAAGGGTGGGATATGAGGAGGTCTGGGTTGCGGAAGGCAAGGTTGTCG
ACCAAACCAAGTTCGCCCATCCAGACTCAAGTCATACCTGACACTTGGAC
CACTAGTCACGCGCAGTTGTTGAAAACTTGGTTGGCACGGCATGGGGTCT
ACCGCTATACTCTGATGACGACTAGCGAGCATTTAATTCGCTTCGACACT
TATGTCAAGCGGCATCCGTCCCTCACCGTGGAGGAATTTCACCATTCCAC
ACCCCGCCGGATGTAGCCAAGCAGTACCTAGGTCAGGAGCACGCCGGTGG
TGGTCACGTGATGGAGTCGTTTGATGGACATGCGGAGATTCTGTTGGAGA
GTTGGGACATTCTGGGCCGCCTGCGCGCAGATCCATACTATGTGGAGGTA
GTGGAGCCAAGCGAGGTCACATTGATTGACAAGGCCTCCGTTGTCAGAAG
GGTGGGATATGAGGAGGTCTGGGTTGCGGAAGGCAAGGTTGTCGACCAAA
CCAAGTTCGCCCATCCAGACTCAAGTCATACCTGACACTTGGACCACTAG
TCACGCGCAGTTGTTGAAAACTTGGTTGGCACGGCATGGGGTCTACCGCT
ATACTCTGATGACGACTAGCGAGCATTTAATTCGCTTCGACACTTATGTC
AAGCGGCATCCGTCCCTCACCGTGGAGGAATTTCACCATTCCACACCCCG
CCGGATGTAGCCAAGCAGTACCTAGGTCAGGAGCACGCCGGTGGTGGTCA
CGTGATGGAGTCGTTTGATGGACATGCGGAGATTCTGTTGGAGAGTTGGG
ACATTCTGGGCCGCCTGCGCGCAGATCCATACTATGTGGAGGTAGTGGAG
CCAAGCGAGGTCACATTGATTGACAAGGCCTCCGTTGTCAGAAGGGTGGG
ATATGAGGAGGTCTGGGTTGCGGAAGGCAAGGTTGTCGACCAAACCAAGT
TCGCCCATCCAGACTCAAGTCATACCTGACACTTGGACCACTAGTCACGC
GCAGTTGTTGAAAACTTGGTTGGCACGGCATGGGGTCTACCGCTATACTC
TGATGACGACTAGCGAGCATTTAATTCGCTTCGACACTTATGTCAAGCGG
CATCCGTCCCTCACCGTGGAGGAATTTCACCA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011217-T1.utr3p1 | KJC3_011217-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011217-T1.utr5p1 | KJC3_011217-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR011008 |
| DBxref | InterPro:IPR009799 |
| DBxref | PFAM:PF07110 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:64659..65284 - |
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