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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:256680..259787+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011305-T1 ID=KJC3_011305-T1|Name=KJC3_011305-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3108bp|location=Sequence derived from alignment at ch8:256680..259787+ (Aspergillus niger KJC3)
CCGACATAATGCTTACAAAGTTTGTTGTCAATGCTATTCTTCCTCACTCG
TGGCCAGATACGAGGATCAACGCCAGGAACCAAGTAAAGACACGAAGCAA
AAAAAAAGTTTGGAACCAGGGACAGGCCCGGGGATACCCGACCTATGAAG
CAAAGCAAAGTAGCACAAGTAAAAGTACCAGCTCGGCTTCTCGCGTTTTG
CTTCCATGGCCGAGGATGAAACCCGGAGCCACTTTCTGACTCGCTTGCCG
GCTTCCGACTGGCGTTGGCCGCCCCACGTGGGCCTGGCAGGAGGTTTACT
ATTATTCGATATTATTCGGCCTTGGTTTTGCACAAGCCCACACAAGACAG
GACAAAGAACAAAGAAAACAAAAAAAATAATAAGCCACAAAGGCAAAAAG
TACGGAGCGACGTGAACCCTGATCCTTTGCCAAGACAGCTACTGAGATAG
CTTCTCATCCTAAGGCTTCGAGTGGTTCTGATGCCGAGAAATCGAAACCA
TCACTGCTTGTAGTTGTCTGATGCCCTCAAACATAACTCACGATGGTCTG
GTCGCCCCAGCCGGGGACCCCAGCCAGCAGCCGTAGTCATTATCAACCGG
CCGATAGGGATTTTCATGCCAATAACAAGCTTCGGTGGCGCTTCTAGGGT
ATCCCTCTAGCGACTAGAACCATTGGGACCGTCGCATGTAGGTCGCACTT
TGAGCCGTCTCCAGGCGGACTATTGCCCTCTTATAAAGCTTGGTTGAGAC
TAGGAGAGGCGCCGTTCGCCGCGCAGGTTGAGATAGGCAGCTAAATGAGC
CAAGCTCGCTCCCAAAACTTCCCAGGTGGAGATGGAACCCCCCCAGTCGT
CACGGAAGATGATAACTCCTTTCGGCACATGCCCGAACCCGCCCCGGTAA
TTGCATTGAGTCGTTTCCGTCGAATCCGTCGAATCCACGGTACCCTCGAT
CGACACTTGACGCGACGTTCCTAATTGGACTTAGAGCGGGCGAGGGCTCC
TGGCCACGCTGCCTGCCAGGACCAACCCCAGGGGGTTCGAGGGCACAGCG
GTTATATAGGCCAAAATGCCGTCGGTGGAAAGGAAGCCTGAAACAATTCC
ACCCCCGGTCACATTTTCCCCATCATGCTGTCCCTGGCGATCCAGTCCTT
GCTGTTCGAGGCAGACGCCCATGCGGCCAGTCCGGCCCTGCAGCGTCGCT
CGTCCTCGTCGGCAAGCACTGAGGGCGAGGCTGTCATGAGCCCACTGCCG
AGTTTGCAGACCAAGGGCTTGATCGTAATCTCGGCGCTGGCCACCGTCTC
CCTCATTTGTACTCTTTCCTTGTTGACTTTCTTTACCTATCGTTTTATCT
TCTGGAAACGCCACTACAAACGTTACATCGGTTACAATCAATATGTCGTG
CTCATGTTCAATCTCATTCTGGCTGACTTTATCCAAAGTCTGGGCTTTAT
CATCAGTCTGCGATGGATCCAGACCAACTCGGTGACCGCCTCAGATCCTG
CATGCTTCCTGCAGGGAATCTGGCTGCAGATTGGTGATCCTATGAGTGGT
CTGTTTGTGCTCGCCATCGCCGCACATACTTTTATGCACGTCACCTTGGG
CTACCAGATCTCACACCGTCTCTTCGTCTCCATCATTTGTGGCCTGTGGC
TCTTTGGGGTTATCACGACTGTCATCCCGATCGCAGCACACGGTCGGTAC
GTGTGGTATCCAGCTGTAGCCTGGGTAAGTTGATTCTTTCTCTCACATTA
CTTTTTTCTCTTTCATAAGCCACTAACATTCATCTACCCTAGTGCTGGAT
GACCCCCAAGTATGAGTCGATGCGTCTGTGGACTCACTACTTCTGGATTT
TCGCCTCTGAATTCTTCACCGTCGTCCTATATGCGATCATGTTCATTCAG
CTGCGCAAGAAAATCGCCGAGTCAGCCATTCTGGGCGAGCACAACTCTGA
GAGTCTGACCCGACTCAAGCGCGTTATTTTCCACATGGCCTTGTACCCTG
TGGTGTATATCTGCCTTACCTTGCCCCTTGCCGCAGGTCGAATGGCTTCC
GCCAGTGGTCATTCCCCCAGTGTGCTCTACTTCTGCTTTGCCGGATCCTT
CATGACGCTGTGTGGCTTCTGTGATTCCCTCATGTACACGTTGAGTCGCC
GCAGCGTGGTGCTGGAGCCCGAGGCCAGGATCCACGGCAGCAGCAACAAA
TATTCCAGCCGACCGAACAAATCGTCGGTCGCACACCACTATGGAAACAG
TATCGATGGCAAGGGACCGACCAACACGACGATTGCTCGCGGTCGCAGCG
ATTCCACCGAGGAGATGATCGGCAAGGACGGGTTGGAGCTGGCCCCGATG
GGAGTGGTGCTGCAGCACACGACAATCGAGGTCACCCATGAGGCGGCGTA
TGACTCGGCATCGAGCAATCTGAGTGGCCAACGCGAGCGAAGCAGCATCT
ACCATTAAACTTCCTAAGCTGTCATGACGATTTTGCAACTTCTATATGAG
ATTACCGGCCGAACATCGAGCGCCGGGTTTATACAATTTTAATCAAGTCG
CATTTGCCATCCTACTACAGAACCAGTCAAGAACTGTGTTCCCTTTTTCT
TTGCATCTGCGACAAACCCCGTCTCGCCACCACTATGCGAGCATCACGCG
CCCACAAGCTATCGTCGCTGATCGATATGCGACCGACGCGCGCATCGTAT
CTGAAGGTCCCTCCACCGTACTTCAGAGGACCGAAACCCTCACTGGGTTA
GCGACGACCCAGCCCAGCCACTGACTGGCGCGGCCAACCCACATGCGCCG
TGAAAGGGACATCCAGCCCACAGGCAACAAAATGCCAGTCAAAATGGGGG
CGATTTCAATCCAGATCCCGATCCAGTCACCCAGACCAGACAGACTTTGC
AACGCTTTGACTGCAACGCTTTGACCTGCGCTGGCCACGCAATGAATGAA
ATGGCGCCTATCCTGGTAATTTTCCGGGGTTAATGATTCTGGCGGAGGAC
AGCAACATCTGCCATCTACACGTCACTGTACATATTTCCTATCAGTCATG
ATGCAAGTCTAAACGAACATAAAATCAAAAAGACAATTACTACCACAATA
CAGTTCAC back to topCoding sequence (CDS) from alignment at ch8:256680..259787+ >KJC3_011305-T1 ID=KJC3_011305-T1|Name=KJC3_011305-T1|organism=Aspergillus niger KJC3|type=CDS|length=2532bp|location=Sequence derived from alignment at ch8:256680..259787+ (Aspergillus niger KJC3)
ATGCTGTCCCTGGCGATCCAGTCCTTGCTGTTCGAGGCAGACGCCCATGC
GGCCAGTCCGGCCCTGCAGCGTCGCTCGTCCTCGTCGGCAAGCACTGAGG
GCGAGGCTGTCATGAGCCCACTGCCGAGTTTGCAGACCAAGGGCTTGATC
GTAATCTCGGCGCTGGCCACCGTCTCCCTCATTTGTACTCTTTCCTTGTT
GACTTTCTTTACCTATCGTTTTATCTTCTGGAAACGCCACTACAAACGTT
ACATCGGTTACAATCAATATGTCGTGCTCATGTTCAATCTCATTCTGGCT
GACTTTATCCAAAGTCTGGGCTTTATCATCAGTCTGCGATGGATCCAGAC
CAACTCGGTGACCGCCTCAGATCCTGCATGCTTCCTGCAGGGAATCTGGC
TGCAGATTGGTGATCCTATGAGTGGTCTGTTTGTGCTCGCCATCGCCGCA
CATACTTTTATGCACGTCACCTTGGGCTACCAGATCTCACACCGTCTCTT
CGTCTCCATCATTTGTGGCCTGTGGCTCTTTGGGGTTATCACGACTGTCA
TCCCGATCGCAGCACACGGTCGGTACGTGTGGTATCCAGCTGTAGCCTGG
TGCTGGATGACCCCCAAGTATGAGTCGATGCGTCTGTGGACTCACTACTT
CTGGATTTTCGCCTCTGAATTCTTCACCGTCGTCCTATATGCGATCATGT
TCATTCAGCTGCGCAAGAAAATCGCCGAGTCAGCCATTCTGGGCGAGCAC
AACTCTGAGAGTCTGACCCGACTCAAGCGCGTTATTTTCCACATGGCCTT
GTACCCTGTGGTGTATATCTGCCTTACCTTGCCCCTTGCCGCAGGTCGAA
TGGCTTCCGCCAGTGGTCATTCCCCCAGTGTGCTCTACTTCTGCTTTGCC
GGATCCTTCATGACGCTGTGTGGCTTCTGTGATTCCCTCATGTACACGTT
GAGTCGCCGCAGCGTGGTGCTGGAGCCCGAGGCCAGGATCCACGGCAGCA
GCAACAAATATTCCAGCCGACCGAACAAATCGTCGGTCGCACACCACTAT
GGAAACAGTATCGATGGCAAGGGACCGACCAACACGACGATTGCTCGCGG
TCGCAGCGATTCCACCGAGGAGATGATCGGCAAGGACGGGTTGGAGCTGG
CCCCGATGGGAGTGGTGCTGCAGCACACGACAATCGAGGTCACCCATGAG
GCGGCGTATGACTCGGCATCGAGCAATCTGAGTGGCCAACGCGAGCGAAG
CAGCATCTACCATTAAATGCTGTCCCTGGCGATCCAGTCCTTGCTGTTCG
AGGCAGACGCCCATGCGGCCAGTCCGGCCCTGCAGCGTCGCTCGTCCTCG
TCGGCAAGCACTGAGGGCGAGGCTGTCATGAGCCCACTGCCGAGTTTGCA
GACCAAGGGCTTGATCGTAATCTCGGCGCTGGCCACCGTCTCCCTCATTT
GTACTCTTTCCTTGTTGACTTTCTTTACCTATCGTTTTATCTTCTGGAAA
CGCCACTACAAACGTTACATCGGTTACAATCAATATGTCGTGCTCATGTT
CAATCTCATTCTGGCTGACTTTATCCAAAGTCTGGGCTTTATCATCAGTC
TGCGATGGATCCAGACCAACTCGGTGACCGCCTCAGATCCTGCATGCTTC
CTGCAGGGAATCTGGCTGCAGATTGGTGATCCTATGAGTGGTCTGTTTGT
GCTCGCCATCGCCGCACATACTTTTATGCACGTCACCTTGGGCTACCAGA
TCTCACACCGTCTCTTCGTCTCCATCATTTGTGGCCTGTGGCTCTTTGGG
GTTATCACGACTGTCATCCCGATCGCAGCACACGGTCGGTACGTGTGGTA
TCCAGCTGTAGCCTGGTGCTGGATGACCCCCAAGTATGAGTCGATGCGTC
TGTGGACTCACTACTTCTGGATTTTCGCCTCTGAATTCTTCACCGTCGTC
CTATATGCGATCATGTTCATTCAGCTGCGCAAGAAAATCGCCGAGTCAGC
CATTCTGGGCGAGCACAACTCTGAGAGTCTGACCCGACTCAAGCGCGTTA
TTTTCCACATGGCCTTGTACCCTGTGGTGTATATCTGCCTTACCTTGCCC
CTTGCCGCAGGTCGAATGGCTTCCGCCAGTGGTCATTCCCCCAGTGTGCT
CTACTTCTGCTTTGCCGGATCCTTCATGACGCTGTGTGGCTTCTGTGATT
CCCTCATGTACACGTTGAGTCGCCGCAGCGTGGTGCTGGAGCCCGAGGCC
AGGATCCACGGCAGCAGCAACAAATATTCCAGCCGACCGAACAAATCGTC
GGTCGCACACCACTATGGAAACAGTATCGATGGCAAGGGACCGACCAACA
CGACGATTGCTCGCGGTCGCAGCGATTCCACCGAGGAGATGATCGGCAAG
GACGGGTTGGAGCTGGCCCCGATGGGAGTGGTGCTGCAGCACACGACAAT
CGAGGTCACCCATGAGGCGGCGTATGACTCGGCATCGAGCAATCTGAGTG
GCCAACGCGAGCGAAGCAGCATCTACCATTAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011305-T1.utr5p1 | KJC3_011305-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011305-T1.utr3p1 | KJC3_011305-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR022596 |
| DBxref | InterPro:IPR023041 |
| DBxref | PFAM:PF11970 |
| DBxref | PFAM:PF11710 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:256680..259787 + |
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