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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:324732..327569- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011333-T1 ID=KJC3_011333-T1|Name=KJC3_011333-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2838bp|location=Sequence derived from alignment at ch8:324732..327569- (Aspergillus niger KJC3)
CATCACTGTTGCTTCCTGAGGCATTAAATTTGTACCCACTATCCACACCA
GTCCACATCCGGACTAGCCCCAGCTCCAGACCAGTCACGTGCCTGCTATC
AGCAGTGCAATCAATCCGTCACCATCTCTCCATTAATCAAACAACAATAC
GCCTTCAACTCAAACTGCCCCCGGCAGAGCGGACCGCAATCATGTCCGAC
TCATTCAGCCTCCCCCTGCGCCCGCTCACCGAGAAGCCCGACCGCCCCGA
TACCCTTCCAATCGAGATCGCCCAAATCAACGCCCGATGGGGATCTTTCC
GCGACGTGAACGAAGAGACACTGCTCGCCAAGATCGAAGAGGACAAGAAC
CGGGACCCATGGGAAGAGGAAGATGAGGACGAAAAACTTGCTGAGGATGT
GGACTCAACCGAGCGTCTGGAAACATTGTACAAGCGACGTGCCGAGATCT
TGCAGTTCGCTATGTAAGTAGGTGGTCTGCTGGTAGCAATGGTGGACAAT
TGCGCTAATTGATTTGTTGCGGGTTGAAGGCAGGCGCATATGGAAGCTCT
GTTCGCTTTGGATTTTGTTTCCCTTTTGCTTTCGAAGCATACCCCTCGCC
AGGCGGAGACTTCGATGTCGGCGTTCCTGAAACAGGTTGCGCCGCTTGGG
TCGTTGAATGCGGAGATCGTCGAGCCGCCGCCGAAGTCGGAGGCCGCTGT
GCAGGATGTCAAGACTGTGTCGCGGGGTTGGAGGGCGCAGAACTTCAATG
CCGCTGCGAATAAATTGCTCAATTCGGCGACGCGATTGGAAGAAGAGGTC
GCTTCGGAGACGAAGTACTGGGATGAAGTACTGGCGGTTAAGGAGAAGGG
TTGGAAGGTGTGCAGGTTGCCCCGGGAGAGAACTGCGCTGGGAGTACAAT
ATGGGTTCTTGGAAGGTAGGATGGCTACGTGCTTCTGCTGGACTGATGCT
GACTGTGTTCCTATAGCTACGCCTATATTCCGCGACCGGGGTCTTGCTGC
TCTACGGAGGGCTGATAATGGAAGCTTAATACTGGATAAGGGACTGGCAC
CACAGAAGACGAGGACGGTTCGAGTGCGTGTGAAGCACCGCGGACAACTT
ACGGGATGCTCTAAAATGCCGGATCCGATCCCCGATGCAGCGTCGGTCGA
GCGCAGGATTTTGCAAGCACGCGACACAGTGTACGAGGAGGAGCTATTCC
ACGAGTTGATGCGCGAAGCGCGTATCATGGGAAGTCATGGTGTGACGACT
CGCCAAAACCTGGTCCGACTGCCGATATCCGAGGACCAAGAGATCCTGCT
GGATCTGGTAGATGCGGACCGTGAAACGCCCGACGAAGACAAGATCGAGT
CAACAGAACACGACGTCCTTGCTAATGGGCTTTCACACTCAATTCGGATC
CTGCTCGCGTATGCACACCGCCAGAACCTGCGACGCAGAACCCAACCGCC
GCCCCCGCTCTCCCAGAAACGTCGGCTTACCCCCGAGTATCAGCTCCTGC
GCCCTGTCATGGCGTATCTCCAACACAGCTCGCACGTCCGGTGGTTGGAG
TCTTTCATGAATGATATATACCGGGTTCTGCGGGCGGCAGGGATCGAGCG
TGATTTCCACGCCGTGCCTTTTGCGTCTGTGAGCCTTCCGAAGGTGCGGG
CTGTTCCGAAGGTAGAGAGTCTGGTACAACAGTTCCTGATGCCCTTCGAA
TCGACATTTTCCGGCCATCTGATCACCCCTCAAAGCTCTTTTCGCGTGAA
AATCCGCACCAACCCGGTGTCGCCGCCATTTGGCACCCACTACGACATTT
CCATTGACCTACCTCACCACCCCGAAGTTCAGCCTCCCGGTCGGGTTGGA
CTGCAGAATGAAGCAGCTGCAGCTCTCATGCATTTCGTCAAGTTGGACAT
CGTGTCGGCCATCGCGCTCCAGGGCTCGAAGACGACCAAAAATACCACCA
AGAAAGAAGGCGCCGAGGGGACTTTGACGTGGGAGGCGGCATATCCGCAC
CACGGCGAACTGCTGGCGTTTTCGACTGCTGGCCAAAGCAAGAAGCTGAA
AATCAGCCTGTCACGGGAGGAATTGAAAGTGGAAACATTTTCACTTCGGG
GACTTGAAGGGTTTGGCCGATCGGGCGGCCCCAAGGCACCAAGTTTGCAG
TCTCAGACGTGGACAGCCACTCAGACAGATTCTAAGCCTGGTCTGATGGA
TTTTGTCGCGGAGGTTTCGCGGGAGCAGTCATAAGCAGCTGCGCCGTCGC
GGATGCTGATTCCGTAGATATGTCCCTCGAATCCAATAGGAGCATATGTG
GCGAACTGCTGGATAGTGATAGATAGATAGATGGCTTATGTATTGATACC
CATGACAAAATATTCCAATGGCTGGCACAAACATGTGAATGGTCCAAGCT
TCCAATCAGACTCTCCTCGCCATTCGATGCTCAATATCCTGGATGACCGC
CTGACAGATTCGGAGACGCGGGACGGATGAAAGGAATTGCAATGCACTTC
ACGTGGTGCATTCAGCTATAAGCAATATGCGCTGTCCAGACTAATATGTG
CCAGTGACGCAGCGGCGTGCCAAACAATCCTGTTAGTGATGACGCCGCTG
TCTCAAGTGGAGATGCCGATGAGAAGGTCAGTCCCGTCTGCTCTGCTGAC
CGAGTTGCCCCCGACCGAGGGACTCCCTCATCCCCTACGGTCCCCCATAT
GAGCCAGTCCAGCAGCTCCCCCGCATTCCGCTCTCACTGCGGCTGGACCA
TCGACTGCTCCGGCTGAGCTGCAGCGTAGTACATAGTGTATCTCCGAAGA
GGACATACGACTAAAGTTCTAGTTAAGCTTCCCACTAG back to topCoding sequence (CDS) from alignment at ch8:324732..327569- >KJC3_011333-T1 ID=KJC3_011333-T1|Name=KJC3_011333-T1|organism=Aspergillus niger KJC3|type=CDS|length=5778bp|location=Sequence derived from alignment at ch8:324732..327569- (Aspergillus niger KJC3)
CTACGCCTATATTCCGCGACCGGGGTCTTGCTGCTCTACGGAGGGCTGAT
AATGGAAGCTTAATACTGGATAAGGGACTGGCACCACAGAAGACGAGGAC
GGTTCGAGTGCGTGTGAAGCACCGCGGACAACTTACGGGATGCTCTAAAA
TGCCGGATCCGATCCCCGATGCAGCGTCGGTCGAGCGCAGGATTTTGCAA
GCACGCGACACAGTGTACGAGGAGGAGCTATTCCACGAGTTGATGCGCGA
AGCGCGTATCATGGGAAGTCATGGTGTGACGACTCGCCAAAACCTGGTCC
GACTGCCGATATCCGAGGACCAAGAGATCCTGCTGGATCTGGTAGATGCG
GACCGTGAAACGCCCGACGAAGACAAGATCGAGTCAACAGAACACGACGT
CCTTGCTAATGGGCTTTCACACTCAATTCGGATCCTGCTCGCGTATGCAC
ACCGCCAGAACCTGCGACGCAGAACCCAACCGCCGCCCCCGCTCTCCCAG
AAACGTCGGCTTACCCCCGAGTATCAGCTCCTGCGCCCTGTCATGGCGTA
TCTCCAACACAGCTCGCACGTCCGGTGGTTGGAGTCTTTCATGAATGATA
TATACCGGGTTCTGCGGGCGGCAGGGATCGAGCGTGATTTCCACGCCGTG
CCTTTTGCGTCTGTGAGCCTTCCGAAGGTGCGGGCTGTTCCGAAGGTAGA
GAGTCTGGTACAACAGTTCCTGATGCCCTTCGAATCGACATTTTCCGGCC
ATCTGATCACCCCTCAAAGCTCTTTTCGCGTGAAAATCCGCACCAACCCG
GTGTCGCCGCCATTTGGCACCCACTACGACATTTCCATTGACCTACCTCA
CCACCCCGAAGTTCAGCCTCCCGGTCGGGTTGGACTGCAGAATGAAGCAG
CTGCAGCTCTCATGCATTTCGTCAAGTTGGACATCGTGTCGGCCATCGCG
CTCCAGGGCTCGAAGACGACCAAAAATACCACCAAGAAAGAAGGCGCCGA
GGGGACTTTGACGTGGGAGGCGGCATATCCGCACCACGGCGAACTGCTGG
CGTTTTCGACTGCTGGCCAAAGCAAGAAGCTGAAAATCAGCCTGTCACGG
GAGGAATTGAAAGTGGAAACATTTTCACTTCGGGGACTTGAAGGGTTTGG
CCGATCGGGCGGCCCCAAGGCACCAAGTTTGCAGTCTCAGACGTGGACAG
CCACTCAGACAGATTCTAAGCCTGGTCTGATGGATTTTGTCGCGGAGGTT
TCGCGGGAGCAGTCATAAGCAGGCGCATATGGAAGCTCTGTTCGCTTTGG
ATTTTGTTTCCCTTTTGCTTTCGAAGCATACCCCTCGCCAGGCGGAGACT
TCGATGTCGGCGTTCCTGAAACAGGTTGCGCCGCTTGGGTCGTTGAATGC
GGAGATCGTCGAGCCGCCGCCGAAGTCGGAGGCCGCTGTGCAGGATGTCA
AGACTGTGTCGCGGGGTTGGAGGGCGCAGAACTTCAATGCCGCTGCGAAT
AAATTGCTCAATTCGGCGACGCGATTGGAAGAAGAGGTCGCTTCGGAGAC
GAAGTACTGGGATGAAGTACTGGCGGTTAAGGAGAAGGGTTGGAAGGTGT
GCAGGTTGCCCCGGGAGAGAACTGCGCTGGGAGTACAATATGGGTTCTTG
GAAGATGTCCGACTCATTCAGCCTCCCCCTGCGCCCGCTCACCGAGAAGC
CCGACCGCCCCGATACCCTTCCAATCGAGATCGCCCAAATCAACGCCCGA
TGGGGATCTTTCCGCGACGTGAACGAAGAGACACTGCTCGCCAAGATCGA
AGAGGACAAGAACCGGGACCCATGGGAAGAGGAAGATGAGGACGAAAAAC
TTGCTGAGGATGTGGACTCAACCGAGCGTCTGGAAACATTGTACAAGCGA
CGTGCCGAGATCTTGCAGTTCGCTATCTACGCCTATATTCCGCGACCGGG
GTCTTGCTGCTCTACGGAGGGCTGATAATGGAAGCTTAATACTGGATAAG
GGACTGGCACCACAGAAGACGAGGACGGTTCGAGTGCGTGTGAAGCACCG
CGGACAACTTACGGGATGCTCTAAAATGCCGGATCCGATCCCCGATGCAG
CGTCGGTCGAGCGCAGGATTTTGCAAGCACGCGACACAGTGTACGAGGAG
GAGCTATTCCACGAGTTGATGCGCGAAGCGCGTATCATGGGAAGTCATGG
TGTGACGACTCGCCAAAACCTGGTCCGACTGCCGATATCCGAGGACCAAG
AGATCCTGCTGGATCTGGTAGATGCGGACCGTGAAACGCCCGACGAAGAC
AAGATCGAGTCAACAGAACACGACGTCCTTGCTAATGGGCTTTCACACTC
AATTCGGATCCTGCTCGCGTATGCACACCGCCAGAACCTGCGACGCAGAA
CCCAACCGCCGCCCCCGCTCTCCCAGAAACGTCGGCTTACCCCCGAGTAT
CAGCTCCTGCGCCCTGTCATGGCGTATCTCCAACACAGCTCGCACGTCCG
GTGGTTGGAGTCTTTCATGAATGATATATACCGGGTTCTGCGGGCGGCAG
GGATCGAGCGTGATTTCCACGCCGTGCCTTTTGCGTCTGTGAGCCTTCCG
AAGGTGCGGGCTGTTCCGAAGGTAGAGAGTCTGGTACAACAGTTCCTGAT
GCCCTTCGAATCGACATTTTCCGGCCATCTGATCACCCCTCAAAGCTCTT
TTCGCGTGAAAATCCGCACCAACCCGGTGTCGCCGCCATTTGGCACCCAC
TACGACATTTCCATTGACCTACCTCACCACCCCGAAGTTCAGCCTCCCGG
TCGGGTTGGACTGCAGAATGAAGCAGCTGCAGCTCTCATGCATTTCGTCA
AGTTGGACATCGTGTCGGCCATCGCGCTCCAGGGCTCGAAGACGACCAAA
AATACCACCAAGAAAGAAGGCGCCGAGGGGACTTTGACGTGGGAGGCGGC
ATATCCGCACCACGGCGAACTGCTGGCGTTTTCGACTGCTGGCCAAAGCA
AGAAGCTGAAAATCAGCCTGTCACGGGAGGAATTGAAAGTGGAAACATTT
TCACTTCGGGGACTTGAAGGGTTTGGCCGATCGGGCGGCCCCAAGGCACC
AAGTTTGCAGTCTCAGACGTGGACAGCCACTCAGACAGATTCTAAGCCTG
GTCTGATGGATTTTGTCGCGGAGGTTTCGCGGGAGCAGTCATAAGCAGGC
GCATATGGAAGCTCTGTTCGCTTTGGATTTTGTTTCCCTTTTGCTTTCGA
AGCATACCCCTCGCCAGGCGGAGACTTCGATGTCGGCGTTCCTGAAACAG
GTTGCGCCGCTTGGGTCGTTGAATGCGGAGATCGTCGAGCCGCCGCCGAA
GTCGGAGGCCGCTGTGCAGGATGTCAAGACTGTGTCGCGGGGTTGGAGGG
CGCAGAACTTCAATGCCGCTGCGAATAAATTGCTCAATTCGGCGACGCGA
TTGGAAGAAGAGGTCGCTTCGGAGACGAAGTACTGGGATGAAGTACTGGC
GGTTAAGGAGAAGGGTTGGAAGGTGTGCAGGTTGCCCCGGGAGAGAACTG
CGCTGGGAGTACAATATGGGTTCTTGGAAGATGTCCGACTCATTCAGCCT
CCCCCTGCGCCCGCTCACCGAGAAGCCCGACCGCCCCGATACCCTTCCAA
TCGAGATCGCCCAAATCAACGCCCGATGGGGATCTTTCCGCGACGTGAAC
GAAGAGACACTGCTCGCCAAGATCGAAGAGGACAAGAACCGGGACCCATG
GGAAGAGGAAGATGAGGACGAAAAACTTGCTGAGGATGTGGACTCAACCG
AGCGTCTGGAAACATTGTACAAGCGACGTGCCGAGATCTTGCAGTTCGCT
ATCTACGCCTATATTCCGCGACCGGGGTCTTGCTGCTCTACGGAGGGCTG
ATAATGGAAGCTTAATACTGGATAAGGGACTGGCACCACAGAAGACGAGG
ACGGTTCGAGTGCGTGTGAAGCACCGCGGACAACTTACGGGATGCTCTAA
AATGCCGGATCCGATCCCCGATGCAGCGTCGGTCGAGCGCAGGATTTTGC
AAGCACGCGACACAGTGTACGAGGAGGAGCTATTCCACGAGTTGATGCGC
GAAGCGCGTATCATGGGAAGTCATGGTGTGACGACTCGCCAAAACCTGGT
CCGACTGCCGATATCCGAGGACCAAGAGATCCTGCTGGATCTGGTAGATG
CGGACCGTGAAACGCCCGACGAAGACAAGATCGAGTCAACAGAACACGAC
GTCCTTGCTAATGGGCTTTCACACTCAATTCGGATCCTGCTCGCGTATGC
ACACCGCCAGAACCTGCGACGCAGAACCCAACCGCCGCCCCCGCTCTCCC
AGAAACGTCGGCTTACCCCCGAGTATCAGCTCCTGCGCCCTGTCATGGCG
TATCTCCAACACAGCTCGCACGTCCGGTGGTTGGAGTCTTTCATGAATGA
TATATACCGGGTTCTGCGGGCGGCAGGGATCGAGCGTGATTTCCACGCCG
TGCCTTTTGCGTCTGTGAGCCTTCCGAAGGTGCGGGCTGTTCCGAAGGTA
GAGAGTCTGGTACAACAGTTCCTGATGCCCTTCGAATCGACATTTTCCGG
CCATCTGATCACCCCTCAAAGCTCTTTTCGCGTGAAAATCCGCACCAACC
CGGTGTCGCCGCCATTTGGCACCCACTACGACATTTCCATTGACCTACCT
CACCACCCCGAAGTTCAGCCTCCCGGTCGGGTTGGACTGCAGAATGAAGC
AGCTGCAGCTCTCATGCATTTCGTCAAGTTGGACATCGTGTCGGCCATCG
CGCTCCAGGGCTCGAAGACGACCAAAAATACCACCAAGAAAGAAGGCGCC
GAGGGGACTTTGACGTGGGAGGCGGCATATCCGCACCACGGCGAACTGCT
GGCGTTTTCGACTGCTGGCCAAAGCAAGAAGCTGAAAATCAGCCTGTCAC
GGGAGGAATTGAAAGTGGAAACATTTTCACTTCGGGGACTTGAAGGGTTT
GGCCGATCGGGCGGCCCCAAGGCACCAAGTTTGCAGTCTCAGACGTGGAC
AGCCACTCAGACAGATTCTAAGCCTGGTCTGATGGATTTTGTCGCGGAGG
TTTCGCGGGAGCAGTCATAAGCAGGCGCATATGGAAGCTCTGTTCGCTTT
GGATTTTGTTTCCCTTTTGCTTTCGAAGCATACCCCTCGCCAGGCGGAGA
CTTCGATGTCGGCGTTCCTGAAACAGGTTGCGCCGCTTGGGTCGTTGAAT
GCGGAGATCGTCGAGCCGCCGCCGAAGTCGGAGGCCGCTGTGCAGGATGT
CAAGACTGTGTCGCGGGGTTGGAGGGCGCAGAACTTCAATGCCGCTGCGA
ATAAATTGCTCAATTCGGCGACGCGATTGGAAGAAGAGGTCGCTTCGGAG
ACGAAGTACTGGGATGAAGTACTGGCGGTTAAGGAGAAGGGTTGGAAGGT
GTGCAGGTTGCCCCGGGAGAGAACTGCGCTGGGAGTACAATATGGGTTCT
TGGAAGATGTCCGACTCATTCAGCCTCCCCCTGCGCCCGCTCACCGAGAA
GCCCGACCGCCCCGATACCCTTCCAATCGAGATCGCCCAAATCAACGCCC
GATGGGGATCTTTCCGCGACGTGAACGAAGAGACACTGCTCGCCAAGATC
GAAGAGGACAAGAACCGGGACCCATGGGAAGAGGAAGATGAGGACGAAAA
ACTTGCTGAGGATGTGGACTCAACCGAGCGTCTGGAAACATTGTACAAGC
GACGTGCCGAGATCTTGCAGTTCGCTAT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016592 | mediator complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006357 | regulation of transcription by RNA polymerase II |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003712 | transcription coregulator activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011333-T1.utr3p1 | KJC3_011333-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011333-T1.utr5p1 | KJC3_011333-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR019313 |
| DBxref | PFAM:PF10156 |
| Product | RNA polymerase II mediator complex subunit |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:324732..327569 - |
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