|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:324732..327569- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011333-T2 ID=KJC3_011333-T2|Name=KJC3_011333-T2|organism=Aspergillus niger KJC3|type=mRNA|length=2838bp|location=Sequence derived from alignment at ch8:324732..327569- (Aspergillus niger KJC3)
CATCACTGTTGCTTCCTGAGGCATTAAATTTGTACCCACTATCCACACCA
GTCCACATCCGGACTAGCCCCAGCTCCAGACCAGTCACGTGCCTGCTATC
AGCAGTGCAATCAATCCGTCACCATCTCTCCATTAATCAAACAACAATAC
GCCTTCAACTCAAACTGCCCCCGGCAGAGCGGACCGCAATCATGTCCGAC
TCATTCAGCCTCCCCCTGCGCCCGCTCACCGAGAAGCCCGACCGCCCCGA
TACCCTTCCAATCGAGATCGCCCAAATCAACGCCCGATGGGGATCTTTCC
GCGACGTGAACGAAGAGACACTGCTCGCCAAGATCGAAGAGGACAAGAAC
CGGGACCCATGGGAAGAGGAAGATGAGGACGAAAAACTTGCTGAGGATGT
GGACTCAACCGAGCGTCTGGAAACATTGTACAAGCGACGTGCCGAGATCT
TGCAGTTCGCTATGTAAGTAGGTGGTCTGCTGGTAGCAATGGTGGACAAT
TGCGCTAATTGATTTGTTGCGGGTTGAAGGCAGGCGCATATGGAAGCTCT
GTTCGCTTTGGATTTTGTTTCCCTTTTGCTTTCGAAGCATACCCCTCGCC
AGGCGGAGACTTCGATGTCGGCGTTCCTGAAACAGGTTGCGCCGCTTGGG
TCGTTGAATGCGGAGATCGTCGAGCCGCCGCCGAAGTCGGAGGCCGCTGT
GCAGGATGTCAAGACTGTGTCGCGGGGTTGGAGGGCGCAGAACTTCAATG
CCGCTGCGAATAAATTGCTCAATTCGGCGACGCGATTGGAAGAAGAGGTC
GCTTCGGAGACGAAGTACTGGGATGAAGTACTGGCGGTTAAGGAGAAGGG
TTGGAAGGTGTGCAGGTTGCCCCGGGAGAGAACTGCGCTGGGAGTACAAT
ATGGGTTCTTGGAAGGTAGGATGGCTACGTGCTTCTGCTGGACTGATGCT
GACTGTGTTCCTATAGCTACGCCTATATTCCGCGACCGGGGTCTTGCTGC
TCTACGGAGGGCTGATAATGGAAGCTTAATACTGGATAAGGGACTGGCAC
CACAGAAGACGAGGACGGTTCGAGTGCGTGTGAAGCACCGCGGACAACTT
ACGGGATGCTCTAAAATGCCGGATCCGATCCCCGATGCAGCGTCGGTCGA
GCGCAGGATTTTGCAAGCACGCGACACAGTGTACGAGGAGGAGCTATTCC
ACGAGTTGATGCGCGAAGCGCGTATCATGGGAAGTCATGGTGTGACGACT
CGCCAAAACCTGGTCCGACTGCCGATATCCGAGGACCAAGAGATCCTGCT
GGATCTGGTAGATGCGGACCGTGAAACGCCCGACGAAGACAAGATCGAGT
CAACAGAACACGACGTCCTTGCTAATGGGCTTTCACACTCAATTCGGATC
CTGCTCGCGTATGCACACCGCCAGAACCTGCGACGCAGAACCCAACCGCC
GCCCCCGCTCTCCCAGAAACGTCGGCTTACCCCCGAGTATCAGCTCCTGC
GCCCTGTCATGGCGTATCTCCAACACAGCTCGCACGTCCGGTGGTTGGAG
TCTTTCATGAATGATATATACCGGGTTCTGCGGGCGGCAGGGATCGAGCG
TGATTTCCACGCCGTGCCTTTTGCGTCTGTGAGCCTTCCGAAGGTGCGGG
CTGTTCCGAAGGTAGAGAGTCTGGTACAACAGTTCCTGATGCCCTTCGAA
TCGACATTTTCCGGCCATCTGATCACCCCTCAAAGCTCTTTTCGCGTGAA
AATCCGCACCAACCCGGTGTCGCCGCCATTTGGCACCCACTACGACATTT
CCATTGACCTACCTCACCACCCCGAAGTTCAGCCTCCCGGTCGGGTTGGA
CTGCAGAATGAAGCAGCTGCAGCTCTCATGCATTTCGTCAAGTTGGACAT
CGTGTCGGCCATCGCGCTCCAGGGCTCGAAGACGACCAAAAATACCACCA
AGAAAGAAGGCGCCGAGGGGACTTTGACGTGGGAGGCGGCATATCCGCAC
CACGGCGAACTGCTGGCGTTTTCGACTGCTGGCCAAAGCAAGAAGCTGAA
AATCAGCCTGTCACGGGAGGAATTGAAAGTGGAAACATTTTCACTTCGGG
GACTTGAAGGGTTTGGCCGATCGGGCGGCCCCAAGGCACCAAGTTTGCAG
TCTCAGACGTGGACAGCCACTCAGACAGATTCTAAGCCTGGTCTGATGGA
TTTTGTCGCGGAGGTTTCGCGGGAGCAGTCATAAGCAGCTGCGCCGTCGC
GGATGCTGATTCCGTAGATATGTCCCTCGAATCCAATAGGAGCATATGTG
GCGAACTGCTGGATAGTGATAGATAGATAGATGGCTTATGTATTGATACC
CATGACAAAATATTCCAATGGCTGGCACAAACATGTGAATGGTCCAAGCT
TCCAATCAGACTCTCCTCGCCATTCGATGCTCAATATCCTGGATGACCGC
CTGACAGATTCGGAGACGCGGGACGGATGAAAGGAATTGCAATGCACTTC
ACGTGGTGCATTCAGCTATAAGCAATATGCGCTGTCCAGACTAATATGTG
CCAGTGACGCAGCGGCGTGCCAAACAATCCTGTTAGTGATGACGCCGCTG
TCTCAAGTGGAGATGCCGATGAGAAGGTCAGTCCCGTCTGCTCTGCTGAC
CGAGTTGCCCCCGACCGAGGGACTCCCTCATCCCCTACGGTCCCCCATAT
GAGCCAGTCCAGCAGCTCCCCCGCATTCCGCTCTCACTGCGGCTGGACCA
TCGACTGCTCCGGCTGAGCTGCAGCGTAGTACATAGTGTATCTCCGAAGA
GGACATACGACTAAAGTTCTAGTTAAGCTTCCCACTAG back to topCoding sequence (CDS) from alignment at ch8:324732..327569- >KJC3_011333-T2 ID=KJC3_011333-T2|Name=KJC3_011333-T2|organism=Aspergillus niger KJC3|type=CDS|length=5247bp|location=Sequence derived from alignment at ch8:324732..327569- (Aspergillus niger KJC3)
CTACGCCTATATTCCGCGACCGGGGTCTTGCTGCTCTACGGAGGGCTGAT
AATGGAAGCTTAATACTGGATAAGGGACTGGCACCACAGAAGACGAGGAC
GGTTCGAGTGCGTGTGAAGCACCGCGGACAACTTACGGGATGCTCTAAAA
TGCCGGATCCGATCCCCGATGCAGCGTCGGTCGAGCGCAGGATTTTGCAA
GCACGCGACACAGTGTACGAGGAGGAGCTATTCCACGAGTTGATGCGCGA
AGCGCGTATCATGGGAAGTCATGGTGTGACGACTCGCCAAAACCTGGTCC
GACTGCCGATATCCGAGGACCAAGAGATCCTGCTGGATCTGGTAGATGCG
GACCGTGAAACGCCCGACGAAGACAAGATCGAGTCAACAGAACACGACGT
CCTTGCTAATGGGCTTTCACACTCAATTCGGATCCTGCTCGCGTATGCAC
ACCGCCAGAACCTGCGACGCAGAACCCAACCGCCGCCCCCGCTCTCCCAG
AAACGTCGGCTTACCCCCGAGTATCAGCTCCTGCGCCCTGTCATGGCGTA
TCTCCAACACAGCTCGCACGTCCGGTGGTTGGAGTCTTTCATGAATGATA
TATACCGGGTTCTGCGGGCGGCAGGGATCGAGCGTGATTTCCACGCCGTG
CCTTTTGCGTCTGTGAGCCTTCCGAAGGTGCGGGCTGTTCCGAAGGTAGA
GAGTCTGGTACAACAGTTCCTGATGCCCTTCGAATCGACATTTTCCGGCC
ATCTGATCACCCCTCAAAGCTCTTTTCGCGTGAAAATCCGCACCAACCCG
GTGTCGCCGCCATTTGGCACCCACTACGACATTTCCATTGACCTACCTCA
CCACCCCGAAGTTCAGCCTCCCGGTCGGGTTGGACTGCAGAATGAAGCAG
CTGCAGCTCTCATGCATTTCGTCAAGTTGGACATCGTGTCGGCCATCGCG
CTCCAGGGCTCGAAGACGACCAAAAATACCACCAAGAAAGAAGGCGCCGA
GGGGACTTTGACGTGGGAGGCGGCATATCCGCACCACGGCGAACTGCTGG
CGTTTTCGACTGCTGGCCAAAGCAAGAAGCTGAAAATCAGCCTGTCACGG
GAGGAATTGAAAGTGGAAACATTTTCACTTCGGGGACTTGAAGGGTTTGG
CCGATCGGGCGGCCCCAAGGCACCAAGTTTGCAGTCTCAGACGTGGACAG
CCACTCAGACAGATTCTAAGCCTGGTCTGATGGATTTTGTCGCGGAGGTT
TCGCGGGAGCAGTCATAAGCAGGCGCATATGGAAGCTCTGTTCGCTTTGG
ATTTTGTTTCCCTTTTGCTTTCGAAGCATACCCCTCGCCAGGCGGAGACT
TCGATGTCGGCGTTCCTGAAACAGGTTGCGCCGCTTGGGTCGTTGAATGC
GGAGATCGTCGAGCCGCCGCCGAAGTCGGAGGCCGCTGTGCAGGATGTCA
AGACTGTGTCGCGGGGTTGGAGGGCGCAGAACTTCAATGCCGCTGCGAAT
AAATTGCTCAATTCGGCGACGCGATTGGAAGAAGAGGTCGCTTCGGAGAC
GAAGTACTGGGATGAAGTACTGGCGGTTAAGGAGAAGGGTTGGAAGGTGT
GCAGGTTGCCCCGGGAGAGAACTGCGCTGGGAGTACAATATGGGTTCTTG
GAAGATGAGGACGAAAAACTTGCTGAGGATGTGGACTCAACCGAGCGTCT
GGAAACATTGTACAAGCGACGTGCCGAGATCTTGCAGTTCGCTATGTAAC
TACGCCTATATTCCGCGACCGGGGTCTTGCTGCTCTACGGAGGGCTGATA
ATGGAAGCTTAATACTGGATAAGGGACTGGCACCACAGAAGACGAGGACG
GTTCGAGTGCGTGTGAAGCACCGCGGACAACTTACGGGATGCTCTAAAAT
GCCGGATCCGATCCCCGATGCAGCGTCGGTCGAGCGCAGGATTTTGCAAG
CACGCGACACAGTGTACGAGGAGGAGCTATTCCACGAGTTGATGCGCGAA
GCGCGTATCATGGGAAGTCATGGTGTGACGACTCGCCAAAACCTGGTCCG
ACTGCCGATATCCGAGGACCAAGAGATCCTGCTGGATCTGGTAGATGCGG
ACCGTGAAACGCCCGACGAAGACAAGATCGAGTCAACAGAACACGACGTC
CTTGCTAATGGGCTTTCACACTCAATTCGGATCCTGCTCGCGTATGCACA
CCGCCAGAACCTGCGACGCAGAACCCAACCGCCGCCCCCGCTCTCCCAGA
AACGTCGGCTTACCCCCGAGTATCAGCTCCTGCGCCCTGTCATGGCGTAT
CTCCAACACAGCTCGCACGTCCGGTGGTTGGAGTCTTTCATGAATGATAT
ATACCGGGTTCTGCGGGCGGCAGGGATCGAGCGTGATTTCCACGCCGTGC
CTTTTGCGTCTGTGAGCCTTCCGAAGGTGCGGGCTGTTCCGAAGGTAGAG
AGTCTGGTACAACAGTTCCTGATGCCCTTCGAATCGACATTTTCCGGCCA
TCTGATCACCCCTCAAAGCTCTTTTCGCGTGAAAATCCGCACCAACCCGG
TGTCGCCGCCATTTGGCACCCACTACGACATTTCCATTGACCTACCTCAC
CACCCCGAAGTTCAGCCTCCCGGTCGGGTTGGACTGCAGAATGAAGCAGC
TGCAGCTCTCATGCATTTCGTCAAGTTGGACATCGTGTCGGCCATCGCGC
TCCAGGGCTCGAAGACGACCAAAAATACCACCAAGAAAGAAGGCGCCGAG
GGGACTTTGACGTGGGAGGCGGCATATCCGCACCACGGCGAACTGCTGGC
GTTTTCGACTGCTGGCCAAAGCAAGAAGCTGAAAATCAGCCTGTCACGGG
AGGAATTGAAAGTGGAAACATTTTCACTTCGGGGACTTGAAGGGTTTGGC
CGATCGGGCGGCCCCAAGGCACCAAGTTTGCAGTCTCAGACGTGGACAGC
CACTCAGACAGATTCTAAGCCTGGTCTGATGGATTTTGTCGCGGAGGTTT
CGCGGGAGCAGTCATAAGCAGGCGCATATGGAAGCTCTGTTCGCTTTGGA
TTTTGTTTCCCTTTTGCTTTCGAAGCATACCCCTCGCCAGGCGGAGACTT
CGATGTCGGCGTTCCTGAAACAGGTTGCGCCGCTTGGGTCGTTGAATGCG
GAGATCGTCGAGCCGCCGCCGAAGTCGGAGGCCGCTGTGCAGGATGTCAA
GACTGTGTCGCGGGGTTGGAGGGCGCAGAACTTCAATGCCGCTGCGAATA
AATTGCTCAATTCGGCGACGCGATTGGAAGAAGAGGTCGCTTCGGAGACG
AAGTACTGGGATGAAGTACTGGCGGTTAAGGAGAAGGGTTGGAAGGTGTG
CAGGTTGCCCCGGGAGAGAACTGCGCTGGGAGTACAATATGGGTTCTTGG
AAGATGAGGACGAAAAACTTGCTGAGGATGTGGACTCAACCGAGCGTCTG
GAAACATTGTACAAGCGACGTGCCGAGATCTTGCAGTTCGCTATGTAACT
ACGCCTATATTCCGCGACCGGGGTCTTGCTGCTCTACGGAGGGCTGATAA
TGGAAGCTTAATACTGGATAAGGGACTGGCACCACAGAAGACGAGGACGG
TTCGAGTGCGTGTGAAGCACCGCGGACAACTTACGGGATGCTCTAAAATG
CCGGATCCGATCCCCGATGCAGCGTCGGTCGAGCGCAGGATTTTGCAAGC
ACGCGACACAGTGTACGAGGAGGAGCTATTCCACGAGTTGATGCGCGAAG
CGCGTATCATGGGAAGTCATGGTGTGACGACTCGCCAAAACCTGGTCCGA
CTGCCGATATCCGAGGACCAAGAGATCCTGCTGGATCTGGTAGATGCGGA
CCGTGAAACGCCCGACGAAGACAAGATCGAGTCAACAGAACACGACGTCC
TTGCTAATGGGCTTTCACACTCAATTCGGATCCTGCTCGCGTATGCACAC
CGCCAGAACCTGCGACGCAGAACCCAACCGCCGCCCCCGCTCTCCCAGAA
ACGTCGGCTTACCCCCGAGTATCAGCTCCTGCGCCCTGTCATGGCGTATC
TCCAACACAGCTCGCACGTCCGGTGGTTGGAGTCTTTCATGAATGATATA
TACCGGGTTCTGCGGGCGGCAGGGATCGAGCGTGATTTCCACGCCGTGCC
TTTTGCGTCTGTGAGCCTTCCGAAGGTGCGGGCTGTTCCGAAGGTAGAGA
GTCTGGTACAACAGTTCCTGATGCCCTTCGAATCGACATTTTCCGGCCAT
CTGATCACCCCTCAAAGCTCTTTTCGCGTGAAAATCCGCACCAACCCGGT
GTCGCCGCCATTTGGCACCCACTACGACATTTCCATTGACCTACCTCACC
ACCCCGAAGTTCAGCCTCCCGGTCGGGTTGGACTGCAGAATGAAGCAGCT
GCAGCTCTCATGCATTTCGTCAAGTTGGACATCGTGTCGGCCATCGCGCT
CCAGGGCTCGAAGACGACCAAAAATACCACCAAGAAAGAAGGCGCCGAGG
GGACTTTGACGTGGGAGGCGGCATATCCGCACCACGGCGAACTGCTGGCG
TTTTCGACTGCTGGCCAAAGCAAGAAGCTGAAAATCAGCCTGTCACGGGA
GGAATTGAAAGTGGAAACATTTTCACTTCGGGGACTTGAAGGGTTTGGCC
GATCGGGCGGCCCCAAGGCACCAAGTTTGCAGTCTCAGACGTGGACAGCC
ACTCAGACAGATTCTAAGCCTGGTCTGATGGATTTTGTCGCGGAGGTTTC
GCGGGAGCAGTCATAAGCAGGCGCATATGGAAGCTCTGTTCGCTTTGGAT
TTTGTTTCCCTTTTGCTTTCGAAGCATACCCCTCGCCAGGCGGAGACTTC
GATGTCGGCGTTCCTGAAACAGGTTGCGCCGCTTGGGTCGTTGAATGCGG
AGATCGTCGAGCCGCCGCCGAAGTCGGAGGCCGCTGTGCAGGATGTCAAG
ACTGTGTCGCGGGGTTGGAGGGCGCAGAACTTCAATGCCGCTGCGAATAA
ATTGCTCAATTCGGCGACGCGATTGGAAGAAGAGGTCGCTTCGGAGACGA
AGTACTGGGATGAAGTACTGGCGGTTAAGGAGAAGGGTTGGAAGGTGTGC
AGGTTGCCCCGGGAGAGAACTGCGCTGGGAGTACAATATGGGTTCTTGGA
AGATGAGGACGAAAAACTTGCTGAGGATGTGGACTCAACCGAGCGTCTGG
AAACATTGTACAAGCGACGTGCCGAGATCTTGCAGTTCGCTATGTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016592 | mediator complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006357 | regulation of transcription by RNA polymerase II |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003712 | transcription coregulator activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011333-T2.utr3p1 | KJC3_011333-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011333-T2.utr5p1 | KJC3_011333-T2.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR019313 |
| DBxref | PFAM:PF10156 |
| Product | variant 2 |
| Product | RNA polymerase II mediator complex subunit |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:324732..327569 - |
|
