|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:449013..451172+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011379-T1 ID=KJC3_011379-T1|Name=KJC3_011379-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2160bp|location=Sequence derived from alignment at ch8:449013..451172+ (Aspergillus niger KJC3)
CCGCCCCCTCTCTCCTCATCTCTCTTCGTCCCCGAAAGGATCCCCTTTTT
CTTCTCCGACCCTTGGGATCCGTTTGGTGAGGGATTCGCGCCTTTACTAG
AGTCATGCTACTTCTCTATTCTGTGTGAACCTACTTACTGGTTGTCGTCA
CGGCGAACGCTCCGTTACTTCATCGCATTCCCTCGTTTCTCCCCCGTCGT
CGCTTCCCACCCGCTCACCACTCCTTTCGGCACAGCCTCCATGACCCTGT
CGGCCGCGACCGACTCTAATCGTCAGCAGCCAGATACTACTTGGCGAATA
CTTCTGCCTACCTTCTTCTAATCTTGCCGACCACTACCACTCACTATATA
TCGATCTATTCTCGTTACAGTGTCTTAAAAAGTGGACGCCGTCCCGGTGT
GCCGTCCAGCCGGTATAGATAGCGCTATACACTCCTTCTCCCCGCTCGCG
CGCCGTTCGAACTCCACTTGCACACGACAGTTATTTTCGACACAGATCTT
GGATACTAGTACGAGCTTCTTATAATCATGAGTCAACCAATTCCCACATC
ATACGCACCGGTTGCAGAAGGGAATCCCAAGGCTCCCGCGATCCAGCTAC
CCGATGGCACCGTTCAGACGTCGGCGCTTCTAGTCCCGAATAATCAATCC
GCTCACTATCGCAGCGGTCACGTCAACTTGGACACTTTCTCGCCTGTCAA
TGAAAATGGAAGCTTTGAATTCGATCGGGTCCTGAAGACTGGGAAGGTGT
TTCGTCGCGTGAAGCACAAACATGTTAGTCATTTGCGCCTTCAGCCAAGC
CCGGTCTAGAACTAACTCTGTCGAACTAGGCATTTAGAGCCTCCTGGAAA
CCTGCGTATCTCGTTTTACGTCCCAACCTTTTGTCGGTATACAAGGATGA
GGAGGCTACAAGGCTCCGAGCCTCTATCACATTGTCTGAGGTCACGGCAG
TTGCGTCGGTCAGGTCGCCCCGATCCAACCGACAGTACGTATTTGGCGTT
TTCTCTCCTTCAAAGAATTATCGTTTCCAGTCGTCTTCAGAAAAAGATGC
CGAAGACTGGATTAGACATATCCGATCAGAAACCCGCATGGATGAAGACG
AAGAGGCCTTCCTCGCCTTATCAAAGAATAGCGACACCGCCGGGAACAAC
AAGCGCCGCATCTATGACACCACTGATCACTCCGATTTTGATCAGCGCGG
AAGACCAAGCTCGCCGGAAGTCGGGGATTCATTGTCACCTACTTACCATT
CGAGGCGTTTTGCCTCGCCTCATGATCACTCGGGCAATGACATCACGTCA
TATTCGGAATGGTCCGATGGGCCTGGGAGCAACAACGGCGTTCGCATGAC
TTCGCCTTCCATTCAGAACCAACCTGCATCAGTTCACAGCGACGGGCATT
CCTCAATACCGCGCAACGAGTCCGCAGTCCTACGTGACCCGGAGAGAGTT
GTATGCAATGGGTATCTTCAGTGCCTCAAAATCAAGGGATCTATGCGCCA
ATGGAAGCGACTGTGGGTTGTGCTGCGCCCGAAAAGCCTTGGTTTCTACA
AAGATGAACAGGTATGGATTTGGTTATTGTGCTGTTCCCTAGCATCCCAT
TCTATCTATACCCTTTGGGCAAGCTTGCATGACTGACCATCCGATCCTCA
AGGAATACTCTGCCGTCAAAGTCATTCCCATGGCACAGGTGATTGACGCT
GCTGAAGTCGATCCTATGTCACGTTCAAAACATTTCTGTCTCCAAATCAT
CGCAGAAGAGAAGTCGTATCGACTATGTGCGCCTGATGAAGAATCTCTTG
CAAAGTGGCTAGGTGCTTTGAAGAGTATTCTCGTCGCCCGCAAGAAACTG
GAGCCTGCGCCCGGAGCAGCAGGCCTCCGTTAAAAGATATCCACTGTATA
ACATATCCCGGAGCCTTTCGGATTCCGCCCCTTCTATACACTCCTTGAAG
TTTTCTTGATTTCACTTGGATTCTGGCTAGTCTACTTCACTTCTTACCCG
ACTACTCTCCTTTGTTGTTTCCATACTTGCAGGTATTCTATTATTTCACA
CTTGCGCTTGTTTGATGATACATACCCAATGTTCTTCATGATACTGTCTT
AATGTCTTGTGATTTTCTTTAACTGGTTGTACGAGATGTTGAGACCCGAG
CGAGTAAGGC back to topCoding sequence (CDS) from alignment at ch8:449013..451172+ >KJC3_011379-T1 ID=KJC3_011379-T1|Name=KJC3_011379-T1|organism=Aspergillus niger KJC3|type=CDS|length=3627bp|location=Sequence derived from alignment at ch8:449013..451172+ (Aspergillus niger KJC3)
ATGAGTCAACCAATTCCCACATCATACGCACCGGTTGCAGAAGGGAATCC
CAAGGCTCCCGCGATCCAGCTACCCGATGGCACCGTTCAGACGTCGGCGC
TTCTAGTCCCGAATAATCAATCCGCTCACTATCGCAGCGGTCACGTCAAC
TTGGACACTTTCTCGCCTGTCAATGAAAATGGAAGCTTTGAATTCGATCG
GGTCCTGAAGACTGGGAAGGTGTTTCGTCGCGTGAAGCACAAACATGCAT
TTAGAGCCTCCTGGAAACCTGCGTATCTCGTTTTACGTCCCAACCTTTTG
TCGGTATACAAGGATGAGGAGGCTACAAGGCTCCGAGCCTCTATCACATT
GTCTGAGGTCACGGCAGTTGCGTCGGTCAGGTCGCCCCGATCCAACCGAC
AGTACGTATTTGGCGTTTTCTCTCCTTCAAAGAATTATCGTTTCCAGTCG
TCTTCAGAAAAAGATGCCGAAGACTGGATTAGACATATCCGATCAGAAAC
CCGCATGGATGAAGACGAAGAGGCCTTCCTCGCCTTATCAAAGAATAGCG
ACACCGCCGGGAACAACAAGCGCCGCATCTATGACACCACTGATCACTCC
GATTTTGATCAGCGCGGAAGACCAAGCTCGCCGGAAGTCGGGGATTCATT
GTCACCTACTTACCATTCGAGGCGTTTTGCCTCGCCTCATGATCACTCGG
GCAATGACATCACGTCATATTCGGAATGGTCCGATGGGCCTGGGAGCAAC
AACGGCGTTCGCATGACTTCGCCTTCCATTCAGAACCAACCTGCATCAGT
TCACAGCGACGGGCATTCCTCAATACCGCGCAACGAGTCCGCAGTCCTAC
GTGACCCGGAGAGAGTTGTATGCAATGGGTATCTTCAGTGCCTCAAAATC
AAGGGATCTATGCGCCAATGGAAGCGACTGTGGGTTGTGCTGCGCCCGAA
AAGCCTTGGTTTCTACAAAGATGAACAGGAATACTCTGCCGTCAAAGTCA
TTCCCATGGCACAGGTGATTGACGCTGCTGAAGTCGATCCTATGTCACGT
TCAAAACATTTCTGTCTCCAAATCATCGCAGAAGAGAAGTCGTATCGACT
ATGTGCGCCTGATGAAGAATCTCTTGCAAAGTGGCTAGGTGCTTTGAAGA
GTATTCTCGTCGCCCGCAAGAAACTGGAGCCTGCGCCCGGAGCAGCAGGC
CTCCGTTAAATGAGTCAACCAATTCCCACATCATACGCACCGGTTGCAGA
AGGGAATCCCAAGGCTCCCGCGATCCAGCTACCCGATGGCACCGTTCAGA
CGTCGGCGCTTCTAGTCCCGAATAATCAATCCGCTCACTATCGCAGCGGT
CACGTCAACTTGGACACTTTCTCGCCTGTCAATGAAAATGGAAGCTTTGA
ATTCGATCGGGTCCTGAAGACTGGGAAGGTGTTTCGTCGCGTGAAGCACA
AACATGCATTTAGAGCCTCCTGGAAACCTGCGTATCTCGTTTTACGTCCC
AACCTTTTGTCGGTATACAAGGATGAGGAGGCTACAAGGCTCCGAGCCTC
TATCACATTGTCTGAGGTCACGGCAGTTGCGTCGGTCAGGTCGCCCCGAT
CCAACCGACAGTACGTATTTGGCGTTTTCTCTCCTTCAAAGAATTATCGT
TTCCAGTCGTCTTCAGAAAAAGATGCCGAAGACTGGATTAGACATATCCG
ATCAGAAACCCGCATGGATGAAGACGAAGAGGCCTTCCTCGCCTTATCAA
AGAATAGCGACACCGCCGGGAACAACAAGCGCCGCATCTATGACACCACT
GATCACTCCGATTTTGATCAGCGCGGAAGACCAAGCTCGCCGGAAGTCGG
GGATTCATTGTCACCTACTTACCATTCGAGGCGTTTTGCCTCGCCTCATG
ATCACTCGGGCAATGACATCACGTCATATTCGGAATGGTCCGATGGGCCT
GGGAGCAACAACGGCGTTCGCATGACTTCGCCTTCCATTCAGAACCAACC
TGCATCAGTTCACAGCGACGGGCATTCCTCAATACCGCGCAACGAGTCCG
CAGTCCTACGTGACCCGGAGAGAGTTGTATGCAATGGGTATCTTCAGTGC
CTCAAAATCAAGGGATCTATGCGCCAATGGAAGCGACTGTGGGTTGTGCT
GCGCCCGAAAAGCCTTGGTTTCTACAAAGATGAACAGGAATACTCTGCCG
TCAAAGTCATTCCCATGGCACAGGTGATTGACGCTGCTGAAGTCGATCCT
ATGTCACGTTCAAAACATTTCTGTCTCCAAATCATCGCAGAAGAGAAGTC
GTATCGACTATGTGCGCCTGATGAAGAATCTCTTGCAAAGTGGCTAGGTG
CTTTGAAGAGTATTCTCGTCGCCCGCAAGAAACTGGAGCCTGCGCCCGGA
GCAGCAGGCCTCCGTTAAATGAGTCAACCAATTCCCACATCATACGCACC
GGTTGCAGAAGGGAATCCCAAGGCTCCCGCGATCCAGCTACCCGATGGCA
CCGTTCAGACGTCGGCGCTTCTAGTCCCGAATAATCAATCCGCTCACTAT
CGCAGCGGTCACGTCAACTTGGACACTTTCTCGCCTGTCAATGAAAATGG
AAGCTTTGAATTCGATCGGGTCCTGAAGACTGGGAAGGTGTTTCGTCGCG
TGAAGCACAAACATGCATTTAGAGCCTCCTGGAAACCTGCGTATCTCGTT
TTACGTCCCAACCTTTTGTCGGTATACAAGGATGAGGAGGCTACAAGGCT
CCGAGCCTCTATCACATTGTCTGAGGTCACGGCAGTTGCGTCGGTCAGGT
CGCCCCGATCCAACCGACAGTACGTATTTGGCGTTTTCTCTCCTTCAAAG
AATTATCGTTTCCAGTCGTCTTCAGAAAAAGATGCCGAAGACTGGATTAG
ACATATCCGATCAGAAACCCGCATGGATGAAGACGAAGAGGCCTTCCTCG
CCTTATCAAAGAATAGCGACACCGCCGGGAACAACAAGCGCCGCATCTAT
GACACCACTGATCACTCCGATTTTGATCAGCGCGGAAGACCAAGCTCGCC
GGAAGTCGGGGATTCATTGTCACCTACTTACCATTCGAGGCGTTTTGCCT
CGCCTCATGATCACTCGGGCAATGACATCACGTCATATTCGGAATGGTCC
GATGGGCCTGGGAGCAACAACGGCGTTCGCATGACTTCGCCTTCCATTCA
GAACCAACCTGCATCAGTTCACAGCGACGGGCATTCCTCAATACCGCGCA
ACGAGTCCGCAGTCCTACGTGACCCGGAGAGAGTTGTATGCAATGGGTAT
CTTCAGTGCCTCAAAATCAAGGGATCTATGCGCCAATGGAAGCGACTGTG
GGTTGTGCTGCGCCCGAAAAGCCTTGGTTTCTACAAAGATGAACAGGAAT
ACTCTGCCGTCAAAGTCATTCCCATGGCACAGGTGATTGACGCTGCTGAA
GTCGATCCTATGTCACGTTCAAAACATTTCTGTCTCCAAATCATCGCAGA
AGAGAAGTCGTATCGACTATGTGCGCCTGATGAAGAATCTCTTGCAAAGT
GGCTAGGTGCTTTGAAGAGTATTCTCGTCGCCCGCAAGAAACTGGAGCCT
GCGCCCGGAGCAGCAGGCCTCCGTTAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011379-T1.utr5p1 | KJC3_011379-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011379-T1.utr3p1 | KJC3_011379-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR011993 |
| DBxref | InterPro:IPR001849 |
| DBxref | PFAM:PF00169 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:449013..451172 + |
|
