You are here

Home

KJC3_011439-T1, KJC3_011439-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_011439-T1
Unique NameKJC3_011439-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:633697..634971+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_011439-T1 ID=KJC3_011439-T1|Name=KJC3_011439-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1275bp|location=Sequence derived from alignment at ch8:633697..634971+ (Aspergillus niger KJC3)
ATCCCAGCCATATCTCCGGTTGTTAACCCCGGCATTGTTTCACCAAACAC
GAATAGATAAAAGTCTGTGAACCCTTCTCACTTTTTTAGACAATTCGAAG
TCTTCTTTCTCTGACATCATAGCTTTGAGAGTTCTATGGGGAAATGGTCA
ACGTTGCCATTGCGGGCGGGACAGGTGCTGTCGGGCGTACCCTGCTGGAG
GTGATGGCTTCCCAAACCCGCCATCGTGCATTCGCCCTCACACGAAGAGT
AAGTCAGCTTAGGTTACCACATATGTGTAGTACGGATCATCTTATGCTTC
ACAGGAGCCCACCGAAGATGAGCAGCTACTTGGCCCAACATACCAAGTCA
ACTATGAGGACATCGATTCGCTCACGTTATTCCTCGAAGAACACAACATC
CACACGGTCATCAGCGCCTTCGGCATCAACGCTACTTCCCTCGCAACATC
GCAGCTGAATCTCATCAAGGCTGCCGATGCATCGTCTGTTACTAAGAGAT
TCATTCCTAGCTCATTCGCCATTCCTTATCCGGAAGAGTGGGTCTCCATC
TTGCTTTTCATACCACATCTTCTAACTATCGTAGAGATGTCTCTATTCTG
CCACCTCTTGAACACTACTTTGCTTCTTTCAGAGCCCTGGCAAATTCTAA
CCTCGAATGGGCCCCCGTCTATAATGGCACATTCCTAGAATACATCGCAC
CTCCAACACTGAAGTCGTACCACCCGCATAGTGTGCTGGTACTTGATGTG
GAGAACAATATTACTGCGATCCCCGGAAGTGGCAACACGCCAGTTACTTT
CACGTACACCTTTGATATTGCACGATTCGTGGTTGCCGCGCTCAATCTCG
AAAAGTGGCCCCGGGAGCTCCGCATTGTTGGTGACGAACTGACCTTCAAT
GAATTATTGAAGCTTGCGGAGGTAAAGGGGGTTAAATTTGACGTTGTCTA
CGATGATATCGACAAGCTGAAGGCATCACAAATTACGGAGCTACCGGGTC
ATGTCAAGTCGTATAACAAGTTCCCTAAGGAGAGGCTTCAGTGGTTCTTG
GCTATTTTTGAAACTTGGATGGCTACGGGTCAGGCGCGGGTTGCTAGGGA
GGGAAGTTTAAATGAGATATTTCCGGATATTAAACCTCTTACTGCTAGGC
AGGTGATGGAACGGTATTGAAAGTCTGTCAAGGGATAGTGCTAATTGAAA
AGCTTTCCGCTGGTCTATTGAGGGGTTTAACGGGATATAAGTCTAGTTTG
ACTATGTTCACTTACTCAGGTCACC
back to top

Coding sequence (CDS) from alignment at ch8:633697..634971+

>KJC3_011439-T1 ID=KJC3_011439-T1|Name=KJC3_011439-T1|organism=Aspergillus niger KJC3|type=CDS|length=2772bp|location=Sequence derived from alignment at ch8:633697..634971+ (Aspergillus niger KJC3)
ATGGTCAACGTTGCCATTGCGGGCGGGACAGGTGCTGTCGGGCGTACCCT
GCTGGAGGTGATGGCTTCCCAAACCCGCCATCGTGCATTCGCCCTCACAC
GAAGAGAGCCCACCGAAGATGAGCAGCTACTTGGCCCAACATACCAAGTC
AACTATGAGGACATCGATTCGCTCACGTTATTCCTCGAAGAACACAACAT
CCACACGGTCATCAGCGCCTTCGGCATCAACGCTACTTCCCTCGCAACAT
CGCAGCTGAATCTCATCAAGGCTGCCGATGCATCGTCTGTTACTAAGAGA
TTCATTCCTAGCTCATTCGCCATTCCTTATCCGGAAGAAGATGTCTCTAT
TCTGCCACCTCTTGAACACTACTTTGCTTCTTTCAGAGCCCTGGCAAATT
CTAACCTCGAATGGGCCCCCGTCTATAATGGCACATTCCTAGAATACATC
GCACCTCCAACACTGAAGTCGTACCACCCGCATAGTGTGCTGGTACTTGA
TGTGGAGAACAATATTACTGCGATCCCCGGAAGTGGCAACACGCCAGTTA
CTTTCACGTACACCTTTGATATTGCACGATTCGTGGTTGCCGCGCTCAAT
CTCGAAAAGTGGCCCCGGGAGCTCCGCATTGTTGGTGACGAACTGACCTT
CAATGAATTATTGAAGCTTGCGGAGGTAAAGGGGGTTAAATTTGACGTTG
TCTACGATGATATCGACAAGCTGAAGGCATCACAAATTACGGAGCTACCG
GGTCATGTCAAGTCGTATAACAAGTTCCCTAAGGAGAGGCTTCAGTGGTT
CTTGGCTATTTTTGAAACTTGGATGGCTACGGGTCAGGCGCGGGTTGCTA
GGGAGGGAAGTTTAAATGAGATATTTCCGGATATTAAACCTCTTACTGCT
AGGCAGGTGATGGAACGGTATTGAATGGTCAACGTTGCCATTGCGGGCGG
GACAGGTGCTGTCGGGCGTACCCTGCTGGAGGTGATGGCTTCCCAAACCC
GCCATCGTGCATTCGCCCTCACACGAAGAGAGCCCACCGAAGATGAGCAG
CTACTTGGCCCAACATACCAAGTCAACTATGAGGACATCGATTCGCTCAC
GTTATTCCTCGAAGAACACAACATCCACACGGTCATCAGCGCCTTCGGCA
TCAACGCTACTTCCCTCGCAACATCGCAGCTGAATCTCATCAAGGCTGCC
GATGCATCGTCTGTTACTAAGAGATTCATTCCTAGCTCATTCGCCATTCC
TTATCCGGAAGAAGATGTCTCTATTCTGCCACCTCTTGAACACTACTTTG
CTTCTTTCAGAGCCCTGGCAAATTCTAACCTCGAATGGGCCCCCGTCTAT
AATGGCACATTCCTAGAATACATCGCACCTCCAACACTGAAGTCGTACCA
CCCGCATAGTGTGCTGGTACTTGATGTGGAGAACAATATTACTGCGATCC
CCGGAAGTGGCAACACGCCAGTTACTTTCACGTACACCTTTGATATTGCA
CGATTCGTGGTTGCCGCGCTCAATCTCGAAAAGTGGCCCCGGGAGCTCCG
CATTGTTGGTGACGAACTGACCTTCAATGAATTATTGAAGCTTGCGGAGG
TAAAGGGGGTTAAATTTGACGTTGTCTACGATGATATCGACAAGCTGAAG
GCATCACAAATTACGGAGCTACCGGGTCATGTCAAGTCGTATAACAAGTT
CCCTAAGGAGAGGCTTCAGTGGTTCTTGGCTATTTTTGAAACTTGGATGG
CTACGGGTCAGGCGCGGGTTGCTAGGGAGGGAAGTTTAAATGAGATATTT
CCGGATATTAAACCTCTTACTGCTAGGCAGGTGATGGAACGGTATTGAAT
GGTCAACGTTGCCATTGCGGGCGGGACAGGTGCTGTCGGGCGTACCCTGC
TGGAGGTGATGGCTTCCCAAACCCGCCATCGTGCATTCGCCCTCACACGA
AGAGAGCCCACCGAAGATGAGCAGCTACTTGGCCCAACATACCAAGTCAA
CTATGAGGACATCGATTCGCTCACGTTATTCCTCGAAGAACACAACATCC
ACACGGTCATCAGCGCCTTCGGCATCAACGCTACTTCCCTCGCAACATCG
CAGCTGAATCTCATCAAGGCTGCCGATGCATCGTCTGTTACTAAGAGATT
CATTCCTAGCTCATTCGCCATTCCTTATCCGGAAGAAGATGTCTCTATTC
TGCCACCTCTTGAACACTACTTTGCTTCTTTCAGAGCCCTGGCAAATTCT
AACCTCGAATGGGCCCCCGTCTATAATGGCACATTCCTAGAATACATCGC
ACCTCCAACACTGAAGTCGTACCACCCGCATAGTGTGCTGGTACTTGATG
TGGAGAACAATATTACTGCGATCCCCGGAAGTGGCAACACGCCAGTTACT
TTCACGTACACCTTTGATATTGCACGATTCGTGGTTGCCGCGCTCAATCT
CGAAAAGTGGCCCCGGGAGCTCCGCATTGTTGGTGACGAACTGACCTTCA
ATGAATTATTGAAGCTTGCGGAGGTAAAGGGGGTTAAATTTGACGTTGTC
TACGATGATATCGACAAGCTGAAGGCATCACAAATTACGGAGCTACCGGG
TCATGTCAAGTCGTATAACAAGTTCCCTAAGGAGAGGCTTCAGTGGTTCT
TGGCTATTTTTGAAACTTGGATGGCTACGGGTCAGGCGCGGGTTGCTAGG
GAGGGAAGTTTAAATGAGATATTTCCGGATATTAAACCTCTTACTGCTAG
GCAGGTGATGGAACGGTATTGA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_011439KJC3_011439Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011439-T1KJC3_011439-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011439-T1.utr5p1KJC3_011439-T1.utr5p1Aspergillus niger KJC3five_prime_UTR
KJC3_011439-T1.utr5p2KJC3_011439-T1.utr5p2Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011439-T1.exon1KJC3_011439-T1.exon1Aspergillus niger KJC3exon
KJC3_011439-T1.exon2KJC3_011439-T1.exon2Aspergillus niger KJC3exon
KJC3_011439-T1.exon3KJC3_011439-T1.exon3Aspergillus niger KJC3exon
KJC3_011439-T1.exon4KJC3_011439-T1.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011439-T1.cdsKJC3_011439-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011439-T1.utr3p1KJC3_011439-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036291
DBxrefInterPro:IPR008030
DBxrefPFAM:PF05368
DBxrefPFAM:PF13460
DBxrefPFAM:PF01370
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:633697..634971 +
Powered by Drupal