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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:720583..723446- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011464-T1 ID=KJC3_011464-T1|Name=KJC3_011464-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2864bp|location=Sequence derived from alignment at ch8:720583..723446- (Aspergillus niger KJC3)
GAAGCCGTTCGGCGACAATCCCATCTCTCGTTTGTCGCTCCGCAGCCAAC
CACTTTCTTCTCTTCCCCCCAATTTCTATTTTCCTGGCTTCGCTCTCTGC
TAGCCGTCATGGTTGATCGACGCTCGGATTCTGAAAACGGTTCGCGTGCT
AAACGTCAAAAGATGGACAAGTCTGAAACCGATCCCAAGGACAATCCGTA
CCTGGCTCACATGTATGCGGACGGCAACTCCAACACAGGGACCGATGGCA
CCACAGATCTTCACCCCGCCTTTGGGAAGATGAAGAGGCACCAGACCACC
GCTGCGATGGCTAAGAAGGTGGAAGATGGTGATATCAACCCGTTCAACGG
TCAACCTTTCTCCAGCAAATATGTTTCCATCCTGCAGACTCGTCGCGACC
TGCCCGTGCATGCTCAGAGGTGAGTTCCCATACCCATATAGATGGTTTGC
CACATCGCAAATGGGTTCTAACTATGTTTTTCTAAAGAGATGAATTCCTG
GAGCTCTATCAAAAGTCGCAAATTCTGGTCTTCGTTGGTGAAACTGGTTC
CGGAAAGACCACGCAGATTCCCCAGTTCGTCCTGTTCGATGACATGCCGC
AAACTCAGCGCAAGATGGTCGCTTGTACCCAGCCTCGTCGTGTCGCCGCC
ATGTCCGTCGCTCAACGTGTCGCCGCCGAGCTGGATGTCAAGCTTGGAGA
GGAAGTTGGTTACAGCATCCGTTTCGAAGATATGACCAGTTCCAAGACTG
TGCTCAAGTACATGACGGACGGTATGCTTCTGAGAGAAGCCATGAACGAC
CACAACCTCAACCGCTACAGTACCATCATTCTGGACGAAGCCCACGAGAG
AACAATGGCCACTGATGTTCTCATGGGTCTTCTCAAGGAAGTTGTTGTGC
GCCGACCTGACCTGAAGATCATTATCATGTCTGCTACTCTGGATGCTCAG
AAGTTCCAGCGTTACTTCAACGACGCCCCTCTCCTTGCGGTTCCCGGTCG
TACTCATCCTGTCGAGATCTTCTATACCCCTGAGCCTGAGCAGGATTATG
TGGAAGCTGCCATTCGCACCGTCCTGCAGATCCACGCGACAGAAGACGAA
GGTGACATCCTTCTCTTCTTGACTGGTGAAGAAGAAATCGAAGACGCCTC
ACGGAAGATCTCGTTAGAAGCCGATGAGATGGTAAGAGAGGCCGATGCTG
GTCCCATCAAGGTCTACCCTCTCTACGGTAGTCTGCCCCCGCATATGCAG
CAGCGCATTTTCGAACCGGCACCCCCTCCTCGCCGTCCGGGAGGCCGTCC
TGGCCGGAAGGTCATTGTATCCACCAACATCGCTGAAACTTCGCTTACCA
TCGACGGTATCGTCTACGTCGTCGATCCTGGCTTCTCGAAGCAGAAGATC
TACAACCCCCGTATCCGTGTCGAGTCTCTTCTGGTATCTCCCATCTCGAA
GGCTTCCGCGCAACAGAGAGCTGGTCGTGCTGGTCGTACGCGCCCCGGAA
AGTGCTTCCGTCTGTACACTGAGGGGGCTTTCAAGAAGGAACTCATCGAC
CAGACATACCCCGAGATTCTGCGCTCGAACCTTTCTTCTACCGTGCTGGA
ATTGAAGAAGCTAGGCATTGATGATCTTGTTCACTTCGATCTGATGGATC
CTCCCGCTCCGGAGACTTTGATGAGAGCTTTGGAAGAGCTCAACTATCTG
GCTTGCTTGGACGATGATGGAAACCTCACTCAGCTGGGACGCCTGGCCTC
CGAGTTCCCCCTTGATCCCGCACTTGCTGTGATGCTGATCAGCTCCCCCG
AATTTTACTGCTCCAACGAAATTCTTTCTATCACAGCCCTGCTTTCCGTC
CCGCAAGTCTTCGTCAGACCTGCTTCTCAGCGGAAGCGTGCTGATGAGAT
GAAGGATCTTTTTGCCCACCCTGACGGTGACCACCTTACCCTTCTCAATG
TCTACCATGCTTTTAAGAGCCCTGAAGCGCAGGAGAACTTGAAGCAATGG
TGTCACGACCACTTCCTCTCTCTTAGATCGCTGCAATCGGCAGACAACGT
GCGCATGCAGCTTCTGCGCATCATGGAACGTGAGGAACTCGAGATGGTGT
CCACCCCCTTCGAGGACAAGAAATATTACGAAAACATCCGCCGTGCGCTG
TGCGCAGGCTTCTTCATGCAGGTCGCCAAGAAGGAGACTCAGGGCAAGAA
CATGTATGTCACGATCAAGGACAACCAGAACGTTCTTTTGCACCCCTCGA
CCGTCTTGGGCCACGAAGCGGAATGGGTTCTCTACAACGAATTCGTCCTC
ACCACCAAGAATTACATTCGGACTGTCACGGCTGTCAAGCCCGAATGGCT
CATTGTAAGTCTTACCCTGACCCTCAATCAAACACTCAGACTAGTACTAA
CATAGTGTCTCCTAGGACATCGCACCCACTTACTACGACATCTCCGGCTT
CCCCAAGGGCGAGATCCGCTCCTCCCTCCTTCGCGCTGCTGAGAGACTTT
CCCGCAAGGAGAAGATGCGCTCTGATTCCAGCAGAAGACGATAGACTAGG
TTAATTCTTTGTTGTCACGATATCTATAGATCATGTTTTCTTTATTTCAT
GCCCATGATAATCATGCAGCTCAATTAAAAGGGTGTATCCGGTTCATTGC
ATTTCCTACCTGCTTTCAGTATTGCCTACTTTCATCTGTTACTTATTGTC
TTCACGAATCCGGGCTTTTTTCCTTTCTTTTATGGGCTTTGGCCCTCCCG
GGGACTTCACAGTATGTATTGCATCTTCATCTCATCAAATCTATCTTCGT
ACTTAGATACAGGTACGGACTAGAAAGCAAGTTTGCCCTGTGACATATGT
GACCATAATTCGAT back to topCoding sequence (CDS) from alignment at ch8:720583..723446- >KJC3_011464-T1 ID=KJC3_011464-T1|Name=KJC3_011464-T1|organism=Aspergillus niger KJC3|type=CDS|length=6921bp|location=Sequence derived from alignment at ch8:720583..723446- (Aspergillus niger KJC3)
GACATCGCACCCACTTACTACGACATCTCCGGCTTCCCCAAGGGCGAGAT
CCGCTCCTCCCTCCTTCGCGCTGCTGAGAGACTTTCCCGCAAGGAGAAGA
TGCGCTCTGATTCCAGCAGAAGACGATAGAGATGAATTCCTGGAGCTCTA
TCAAAAGTCGCAAATTCTGGTCTTCGTTGGTGAAACTGGTTCCGGAAAGA
CCACGCAGATTCCCCAGTTCGTCCTGTTCGATGACATGCCGCAAACTCAG
CGCAAGATGGTCGCTTGTACCCAGCCTCGTCGTGTCGCCGCCATGTCCGT
CGCTCAACGTGTCGCCGCCGAGCTGGATGTCAAGCTTGGAGAGGAAGTTG
GTTACAGCATCCGTTTCGAAGATATGACCAGTTCCAAGACTGTGCTCAAG
TACATGACGGACGGTATGCTTCTGAGAGAAGCCATGAACGACCACAACCT
CAACCGCTACAGTACCATCATTCTGGACGAAGCCCACGAGAGAACAATGG
CCACTGATGTTCTCATGGGTCTTCTCAAGGAAGTTGTTGTGCGCCGACCT
GACCTGAAGATCATTATCATGTCTGCTACTCTGGATGCTCAGAAGTTCCA
GCGTTACTTCAACGACGCCCCTCTCCTTGCGGTTCCCGGTCGTACTCATC
CTGTCGAGATCTTCTATACCCCTGAGCCTGAGCAGGATTATGTGGAAGCT
GCCATTCGCACCGTCCTGCAGATCCACGCGACAGAAGACGAAGGTGACAT
CCTTCTCTTCTTGACTGGTGAAGAAGAAATCGAAGACGCCTCACGGAAGA
TCTCGTTAGAAGCCGATGAGATGGTAAGAGAGGCCGATGCTGGTCCCATC
AAGGTCTACCCTCTCTACGGTAGTCTGCCCCCGCATATGCAGCAGCGCAT
TTTCGAACCGGCACCCCCTCCTCGCCGTCCGGGAGGCCGTCCTGGCCGGA
AGGTCATTGTATCCACCAACATCGCTGAAACTTCGCTTACCATCGACGGT
ATCGTCTACGTCGTCGATCCTGGCTTCTCGAAGCAGAAGATCTACAACCC
CCGTATCCGTGTCGAGTCTCTTCTGGTATCTCCCATCTCGAAGGCTTCCG
CGCAACAGAGAGCTGGTCGTGCTGGTCGTACGCGCCCCGGAAAGTGCTTC
CGTCTGTACACTGAGGGGGCTTTCAAGAAGGAACTCATCGACCAGACATA
CCCCGAGATTCTGCGCTCGAACCTTTCTTCTACCGTGCTGGAATTGAAGA
AGCTAGGCATTGATGATCTTGTTCACTTCGATCTGATGGATCCTCCCGCT
CCGGAGACTTTGATGAGAGCTTTGGAAGAGCTCAACTATCTGGCTTGCTT
GGACGATGATGGAAACCTCACTCAGCTGGGACGCCTGGCCTCCGAGTTCC
CCCTTGATCCCGCACTTGCTGTGATGCTGATCAGCTCCCCCGAATTTTAC
TGCTCCAACGAAATTCTTTCTATCACAGCCCTGCTTTCCGTCCCGCAAGT
CTTCGTCAGACCTGCTTCTCAGCGGAAGCGTGCTGATGAGATGAAGGATC
TTTTTGCCCACCCTGACGGTGACCACCTTACCCTTCTCAATGTCTACCAT
GCTTTTAAGAGCCCTGAAGCGCAGGAGAACTTGAAGCAATGGTGTCACGA
CCACTTCCTCTCTCTTAGATCGCTGCAATCGGCAGACAACGTGCGCATGC
AGCTTCTGCGCATCATGGAACGTGAGGAACTCGAGATGGTGTCCACCCCC
TTCGAGGACAAGAAATATTACGAAAACATCCGCCGTGCGCTGTGCGCAGG
CTTCTTCATGCAGGTCGCCAAGAAGGAGACTCAGGGCAAGAACATGTATG
TCACGATCAAGGACAACCAGAACGTTCTTTTGCACCCCTCGACCGTCTTG
GGCCACGAAGCGGAATGGGTTCTCTACAACGAATTCGTCCTCACCACCAA
GAATTACATTCGGACTGTCACGGCTGTCAAGCCCGAATGGCTCATTATGG
TTGATCGACGCTCGGATTCTGAAAACGGTTCGCGTGCTAAACGTCAAAAG
ATGGACAAGTCTGAAACCGATCCCAAGGACAATCCGTACCTGGCTCACAT
GTATGCGGACGGCAACTCCAACACAGGGACCGATGGCACCACAGATCTTC
ACCCCGCCTTTGGGAAGATGAAGAGGCACCAGACCACCGCTGCGATGGCT
AAGAAGGTGGAAGATGGTGATATCAACCCGTTCAACGGTCAACCTTTCTC
CAGCAAATATGTTTCCATCCTGCAGACTCGTCGCGACCTGCCCGTGCATG
CTCAGAGGACATCGCACCCACTTACTACGACATCTCCGGCTTCCCCAAGG
GCGAGATCCGCTCCTCCCTCCTTCGCGCTGCTGAGAGACTTTCCCGCAAG
GAGAAGATGCGCTCTGATTCCAGCAGAAGACGATAGAGATGAATTCCTGG
AGCTCTATCAAAAGTCGCAAATTCTGGTCTTCGTTGGTGAAACTGGTTCC
GGAAAGACCACGCAGATTCCCCAGTTCGTCCTGTTCGATGACATGCCGCA
AACTCAGCGCAAGATGGTCGCTTGTACCCAGCCTCGTCGTGTCGCCGCCA
TGTCCGTCGCTCAACGTGTCGCCGCCGAGCTGGATGTCAAGCTTGGAGAG
GAAGTTGGTTACAGCATCCGTTTCGAAGATATGACCAGTTCCAAGACTGT
GCTCAAGTACATGACGGACGGTATGCTTCTGAGAGAAGCCATGAACGACC
ACAACCTCAACCGCTACAGTACCATCATTCTGGACGAAGCCCACGAGAGA
ACAATGGCCACTGATGTTCTCATGGGTCTTCTCAAGGAAGTTGTTGTGCG
CCGACCTGACCTGAAGATCATTATCATGTCTGCTACTCTGGATGCTCAGA
AGTTCCAGCGTTACTTCAACGACGCCCCTCTCCTTGCGGTTCCCGGTCGT
ACTCATCCTGTCGAGATCTTCTATACCCCTGAGCCTGAGCAGGATTATGT
GGAAGCTGCCATTCGCACCGTCCTGCAGATCCACGCGACAGAAGACGAAG
GTGACATCCTTCTCTTCTTGACTGGTGAAGAAGAAATCGAAGACGCCTCA
CGGAAGATCTCGTTAGAAGCCGATGAGATGGTAAGAGAGGCCGATGCTGG
TCCCATCAAGGTCTACCCTCTCTACGGTAGTCTGCCCCCGCATATGCAGC
AGCGCATTTTCGAACCGGCACCCCCTCCTCGCCGTCCGGGAGGCCGTCCT
GGCCGGAAGGTCATTGTATCCACCAACATCGCTGAAACTTCGCTTACCAT
CGACGGTATCGTCTACGTCGTCGATCCTGGCTTCTCGAAGCAGAAGATCT
ACAACCCCCGTATCCGTGTCGAGTCTCTTCTGGTATCTCCCATCTCGAAG
GCTTCCGCGCAACAGAGAGCTGGTCGTGCTGGTCGTACGCGCCCCGGAAA
GTGCTTCCGTCTGTACACTGAGGGGGCTTTCAAGAAGGAACTCATCGACC
AGACATACCCCGAGATTCTGCGCTCGAACCTTTCTTCTACCGTGCTGGAA
TTGAAGAAGCTAGGCATTGATGATCTTGTTCACTTCGATCTGATGGATCC
TCCCGCTCCGGAGACTTTGATGAGAGCTTTGGAAGAGCTCAACTATCTGG
CTTGCTTGGACGATGATGGAAACCTCACTCAGCTGGGACGCCTGGCCTCC
GAGTTCCCCCTTGATCCCGCACTTGCTGTGATGCTGATCAGCTCCCCCGA
ATTTTACTGCTCCAACGAAATTCTTTCTATCACAGCCCTGCTTTCCGTCC
CGCAAGTCTTCGTCAGACCTGCTTCTCAGCGGAAGCGTGCTGATGAGATG
AAGGATCTTTTTGCCCACCCTGACGGTGACCACCTTACCCTTCTCAATGT
CTACCATGCTTTTAAGAGCCCTGAAGCGCAGGAGAACTTGAAGCAATGGT
GTCACGACCACTTCCTCTCTCTTAGATCGCTGCAATCGGCAGACAACGTG
CGCATGCAGCTTCTGCGCATCATGGAACGTGAGGAACTCGAGATGGTGTC
CACCCCCTTCGAGGACAAGAAATATTACGAAAACATCCGCCGTGCGCTGT
GCGCAGGCTTCTTCATGCAGGTCGCCAAGAAGGAGACTCAGGGCAAGAAC
ATGTATGTCACGATCAAGGACAACCAGAACGTTCTTTTGCACCCCTCGAC
CGTCTTGGGCCACGAAGCGGAATGGGTTCTCTACAACGAATTCGTCCTCA
CCACCAAGAATTACATTCGGACTGTCACGGCTGTCAAGCCCGAATGGCTC
ATTATGGTTGATCGACGCTCGGATTCTGAAAACGGTTCGCGTGCTAAACG
TCAAAAGATGGACAAGTCTGAAACCGATCCCAAGGACAATCCGTACCTGG
CTCACATGTATGCGGACGGCAACTCCAACACAGGGACCGATGGCACCACA
GATCTTCACCCCGCCTTTGGGAAGATGAAGAGGCACCAGACCACCGCTGC
GATGGCTAAGAAGGTGGAAGATGGTGATATCAACCCGTTCAACGGTCAAC
CTTTCTCCAGCAAATATGTTTCCATCCTGCAGACTCGTCGCGACCTGCCC
GTGCATGCTCAGAGGACATCGCACCCACTTACTACGACATCTCCGGCTTC
CCCAAGGGCGAGATCCGCTCCTCCCTCCTTCGCGCTGCTGAGAGACTTTC
CCGCAAGGAGAAGATGCGCTCTGATTCCAGCAGAAGACGATAGAGATGAA
TTCCTGGAGCTCTATCAAAAGTCGCAAATTCTGGTCTTCGTTGGTGAAAC
TGGTTCCGGAAAGACCACGCAGATTCCCCAGTTCGTCCTGTTCGATGACA
TGCCGCAAACTCAGCGCAAGATGGTCGCTTGTACCCAGCCTCGTCGTGTC
GCCGCCATGTCCGTCGCTCAACGTGTCGCCGCCGAGCTGGATGTCAAGCT
TGGAGAGGAAGTTGGTTACAGCATCCGTTTCGAAGATATGACCAGTTCCA
AGACTGTGCTCAAGTACATGACGGACGGTATGCTTCTGAGAGAAGCCATG
AACGACCACAACCTCAACCGCTACAGTACCATCATTCTGGACGAAGCCCA
CGAGAGAACAATGGCCACTGATGTTCTCATGGGTCTTCTCAAGGAAGTTG
TTGTGCGCCGACCTGACCTGAAGATCATTATCATGTCTGCTACTCTGGAT
GCTCAGAAGTTCCAGCGTTACTTCAACGACGCCCCTCTCCTTGCGGTTCC
CGGTCGTACTCATCCTGTCGAGATCTTCTATACCCCTGAGCCTGAGCAGG
ATTATGTGGAAGCTGCCATTCGCACCGTCCTGCAGATCCACGCGACAGAA
GACGAAGGTGACATCCTTCTCTTCTTGACTGGTGAAGAAGAAATCGAAGA
CGCCTCACGGAAGATCTCGTTAGAAGCCGATGAGATGGTAAGAGAGGCCG
ATGCTGGTCCCATCAAGGTCTACCCTCTCTACGGTAGTCTGCCCCCGCAT
ATGCAGCAGCGCATTTTCGAACCGGCACCCCCTCCTCGCCGTCCGGGAGG
CCGTCCTGGCCGGAAGGTCATTGTATCCACCAACATCGCTGAAACTTCGC
TTACCATCGACGGTATCGTCTACGTCGTCGATCCTGGCTTCTCGAAGCAG
AAGATCTACAACCCCCGTATCCGTGTCGAGTCTCTTCTGGTATCTCCCAT
CTCGAAGGCTTCCGCGCAACAGAGAGCTGGTCGTGCTGGTCGTACGCGCC
CCGGAAAGTGCTTCCGTCTGTACACTGAGGGGGCTTTCAAGAAGGAACTC
ATCGACCAGACATACCCCGAGATTCTGCGCTCGAACCTTTCTTCTACCGT
GCTGGAATTGAAGAAGCTAGGCATTGATGATCTTGTTCACTTCGATCTGA
TGGATCCTCCCGCTCCGGAGACTTTGATGAGAGCTTTGGAAGAGCTCAAC
TATCTGGCTTGCTTGGACGATGATGGAAACCTCACTCAGCTGGGACGCCT
GGCCTCCGAGTTCCCCCTTGATCCCGCACTTGCTGTGATGCTGATCAGCT
CCCCCGAATTTTACTGCTCCAACGAAATTCTTTCTATCACAGCCCTGCTT
TCCGTCCCGCAAGTCTTCGTCAGACCTGCTTCTCAGCGGAAGCGTGCTGA
TGAGATGAAGGATCTTTTTGCCCACCCTGACGGTGACCACCTTACCCTTC
TCAATGTCTACCATGCTTTTAAGAGCCCTGAAGCGCAGGAGAACTTGAAG
CAATGGTGTCACGACCACTTCCTCTCTCTTAGATCGCTGCAATCGGCAGA
CAACGTGCGCATGCAGCTTCTGCGCATCATGGAACGTGAGGAACTCGAGA
TGGTGTCCACCCCCTTCGAGGACAAGAAATATTACGAAAACATCCGCCGT
GCGCTGTGCGCAGGCTTCTTCATGCAGGTCGCCAAGAAGGAGACTCAGGG
CAAGAACATGTATGTCACGATCAAGGACAACCAGAACGTTCTTTTGCACC
CCTCGACCGTCTTGGGCCACGAAGCGGAATGGGTTCTCTACAACGAATTC
GTCCTCACCACCAAGAATTACATTCGGACTGTCACGGCTGTCAAGCCCGA
ATGGCTCATTATGGTTGATCGACGCTCGGATTCTGAAAACGGTTCGCGTG
CTAAACGTCAAAAGATGGACAAGTCTGAAACCGATCCCAAGGACAATCCG
TACCTGGCTCACATGTATGCGGACGGCAACTCCAACACAGGGACCGATGG
CACCACAGATCTTCACCCCGCCTTTGGGAAGATGAAGAGGCACCAGACCA
CCGCTGCGATGGCTAAGAAGGTGGAAGATGGTGATATCAACCCGTTCAAC
GGTCAACCTTTCTCCAGCAAATATGTTTCCATCCTGCAGACTCGTCGCGA
CCTGCCCGTGCATGCTCAGAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0005524 | ATP binding |
| GO:0004386 | helicase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011464-T1.utr3p1 | KJC3_011464-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011464-T1.utr5p1 | KJC3_011464-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR002464 |
| DBxref | InterPro:IPR011709 |
| DBxref | InterPro:IPR011545 |
| DBxref | InterPro:IPR001650 |
| DBxref | InterPro:IPR014001 |
| DBxref | InterPro:IPR007502 |
| DBxref | PFAM:PF07717 |
| DBxref | PFAM:PF00271 |
| DBxref | PFAM:PF04408 |
| DBxref | PFAM:PF00270 |
| Product | DEAH-box ATP-dependent RNA helicase prp43 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:720583..723446 - |
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