|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:739303..740865+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011469-T1 ID=KJC3_011469-T1|Name=KJC3_011469-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1563bp|location=Sequence derived from alignment at ch8:739303..740865+ (Aspergillus niger KJC3)
GTTCCAGCTCCGCGCGGCGTCCGAAGTAATCGCATCTCTGCTACAAAAAC
TTCTCGATCGCTCATTTCCACCTCACCGGTCTTCGAGCGCAGCTTCTTCA
CATGTTCAAGCCTGCAGCTTGTCCAGCAAAGCTACTTCAAACTTAATACC
CACAGCCACACAACCACCCCGCAGAAACGAAACTTTCGAACTACAGCCGC
ACCGCATACTTCTCCGAGCTCACCTCCACACGACAATGTATACACCTTAG
ATACCAACCAACAGCTTCAGATCTGCTCTTCCATACCTCAGTCTCCCACA
CCGAACAAATACACACATACACAAGATGAATACCATCGACGCAACAGAAC
ACTACGAAACCAGCGCCCACGGTACGTCCACCAACCACATACATCCATCA
CCATCTCATCCCCCTCCCAAATCCAACTTCTACCCTACAAACTAACAAGA
CGAAATATAGACCGGCCCCCCTCCCTCCTAACCATCATCCTCGACACCAA
TCCGCACGCCTGGGCACTCCTCAACCCCTCCCTCCCCCTCTCCACCGCCA
TCGCCAACATCCTCGTCTTCATCAACGCCCACCTAGCATGCAACTACGCG
AACGAAGTAGCCGTGGTATCCTCACACACCTCTCAAGCAACATGGCTCTA
CCCCGTCGAAAAAGCCGCCACCACCACCACCGCCGCCAATAACCTAGACT
CCGACGGCGACATCTCCATGCGCTCCCAACAACCACCACCATCTACTCAC
ACCAACGTAAACAAATACCGCCCCTTCCGCATCGTCGAAGAACAAGTCTC
CACGCACCTCCACAACCTAATGTCCCAAACCACCCCAGAAACCCTCCAAT
CCACCACCTCGACTATGATGGCCGGCGCGCTTACCCTAGCACTAAGCCAC
ATCAACCGCCGCACGTTAGCATGGAATGAAGCGCACGGGGGAGATATCGA
CACGACAAACCCCAATGACCCATCTTCATCATCCTCCTCATCACATAATA
CAAAGGGTACTGCGGAATCAACCCTCCAATCACGTATCCTCATTCTCTCT
GTGTCAAGCTCCACCGGTTCAGCGCATCAATATATCCCCATCATGAATGC
TATATTCGCTTGCCAGAGGCTGCATATTCCGATTGATGTATGTAAGGTGT
CTGGCGATGCGGTATTCCTGCAGCAGGCGTCGGATGCGACCAAGGGGGTG
TATATGGCGTTGGATGAGCCGAAGGGACTATTGCAGTACTTGATGATGGC
GTTTTTGCCGGATCAGAGGAGTAGACGCCATTTGGTGCTGCCTACAAGAG
TGGATGTGGATTTCCGGGCGGCGTGCTTTTGTCATCGGAGGGTTGTGGAT
GTGGGGTTTGTGTGTTCGATTTGTTTGAGTATCTTCTGTGAGCCGTTGGG
GGATGGGGTGTGTTTGACTTGTGGGAGTCGGTTGGATGTAAGTGATTATG
GGGCTAAGCCGGCGGTGGTGGCTAGAAAGAAGAAGAAGAAGAAGAAGAAG
GTTAAGGGGAATGGGATGTCTGCGGCGGGGACGCCTACGCCTACACCGAC
GCCGGGGCCGTGA back to topCoding sequence (CDS) from alignment at ch8:739303..740865+ >KJC3_011469-T1 ID=KJC3_011469-T1|Name=KJC3_011469-T1|organism=Aspergillus niger KJC3|type=CDS|length=2298bp|location=Sequence derived from alignment at ch8:739303..740865+ (Aspergillus niger KJC3)
ATGAATACCATCGACGCAACAGAACACTACGAAACCAGCGCCCACGACCG
GCCCCCCTCCCTCCTAACCATCATCCTCGACACCAATCCGCACGCCTGGG
CACTCCTCAACCCCTCCCTCCCCCTCTCCACCGCCATCGCCAACATCCTC
GTCTTCATCAACGCCCACCTAGCATGCAACTACGCGAACGAAGTAGCCGT
GGTATCCTCACACACCTCTCAAGCAACATGGCTCTACCCCGTCGAAAAAG
CCGCCACCACCACCACCGCCGCCAATAACCTAGACTCCGACGGCGACATC
TCCATGCGCTCCCAACAACCACCACCATCTACTCACACCAACGTAAACAA
ATACCGCCCCTTCCGCATCGTCGAAGAACAAGTCTCCACGCACCTCCACA
ACCTAATGTCCCAAACCACCCCAGAAACCCTCCAATCCACCACCTCGACT
ATGATGGCCGGCGCGCTTACCCTAGCACTAAGCCACATCAACCGCCGCAC
GTTAGCATGGAATGAAGCGCACGGGGGAGATATCGACACGACAAACCCCA
ATGACCCATCTTCATCATCCTCCTCATCACATAATACAAAGGGTACTGCG
GAATCAACCCTCCAATCACGTATCCTCATTCTCTCTGTGTCAAGCTCCAC
CGGTTCAGCGCATCAATATATCCCCATCATGAATGCTATATTCGCTTGCC
AGAGGCTGCATATTCCGATTGATGTATGTAAGGTGTCTGGCGATGCGGTA
TTCCTGCAGCAGGCGTCGGATGCGACCAAGGGGGTGTATATGGCGTTGGA
TGAGCCGAAGGGACTATTGCAGTACTTGATGATGGCGTTTTTGCCGGATC
AGAGGAGTAGACGCCATTTGGTGCTGCCTACAAGAGTGGATGTGGATTTC
CGGGCGGCGTGCTTTTGTCATCGGAGGGTTGTGGATGTGGGGTTTGTGTG
TTCGATTTGTTTGAGTATCTTCTGTGAGCCGTTGGGGGATGGGGTGTGTT
TGACTTGTGGGAGTCGGTTGGATGTAAGTGATTATGGGGCTAAGCCGGCG
GTGGTGGCTAGAAAGAAGAAGAAGAAGAAGAAGAAGGTTAAGGGGAATGG
GATGTCTGCGGCGGGGACGCCTACGCCTACACCGACGCCGGGGCCGTGAA
TGAATACCATCGACGCAACAGAACACTACGAAACCAGCGCCCACGACCGG
CCCCCCTCCCTCCTAACCATCATCCTCGACACCAATCCGCACGCCTGGGC
ACTCCTCAACCCCTCCCTCCCCCTCTCCACCGCCATCGCCAACATCCTCG
TCTTCATCAACGCCCACCTAGCATGCAACTACGCGAACGAAGTAGCCGTG
GTATCCTCACACACCTCTCAAGCAACATGGCTCTACCCCGTCGAAAAAGC
CGCCACCACCACCACCGCCGCCAATAACCTAGACTCCGACGGCGACATCT
CCATGCGCTCCCAACAACCACCACCATCTACTCACACCAACGTAAACAAA
TACCGCCCCTTCCGCATCGTCGAAGAACAAGTCTCCACGCACCTCCACAA
CCTAATGTCCCAAACCACCCCAGAAACCCTCCAATCCACCACCTCGACTA
TGATGGCCGGCGCGCTTACCCTAGCACTAAGCCACATCAACCGCCGCACG
TTAGCATGGAATGAAGCGCACGGGGGAGATATCGACACGACAAACCCCAA
TGACCCATCTTCATCATCCTCCTCATCACATAATACAAAGGGTACTGCGG
AATCAACCCTCCAATCACGTATCCTCATTCTCTCTGTGTCAAGCTCCACC
GGTTCAGCGCATCAATATATCCCCATCATGAATGCTATATTCGCTTGCCA
GAGGCTGCATATTCCGATTGATGTATGTAAGGTGTCTGGCGATGCGGTAT
TCCTGCAGCAGGCGTCGGATGCGACCAAGGGGGTGTATATGGCGTTGGAT
GAGCCGAAGGGACTATTGCAGTACTTGATGATGGCGTTTTTGCCGGATCA
GAGGAGTAGACGCCATTTGGTGCTGCCTACAAGAGTGGATGTGGATTTCC
GGGCGGCGTGCTTTTGTCATCGGAGGGTTGTGGATGTGGGGTTTGTGTGT
TCGATTTGTTTGAGTATCTTCTGTGAGCCGTTGGGGGATGGGGTGTGTTT
GACTTGTGGGAGTCGGTTGGATGTAAGTGATTATGGGGCTAAGCCGGCGG
TGGTGGCTAGAAAGAAGAAGAAGAAGAAGAAGAAGGTTAAGGGGAATGGG
ATGTCTGCGGCGGGGACGCCTACGCCTACACCGACGCCGGGGCCGTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0000439 | transcription factor TFIIH core complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006289 | nucleotide-excision repair |
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011469-T1.utr5p1 | KJC3_011469-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG0926369X |
| DBxref | InterPro:IPR004600 |
| DBxref | InterPro:IPR036465 |
| DBxref | PFAM:PF03850 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:739303..740865 + |
|
