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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:839868..840498- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011511-T1 ID=KJC3_011511-T1|Name=KJC3_011511-T1|organism=Aspergillus niger KJC3|type=mRNA|length=631bp|location=Sequence derived from alignment at ch8:839868..840498- (Aspergillus niger KJC3)
ATGGCTCCCATCCCGCTCAGCACGGTCGACAGTGTGTATTGATTCTTTCT
AATCCAATGTTATCAGTTACTAACTCTATCTTCTGCCCAGCCGACCTCAA
AGACGTAATCCAACACCTCTTTGAAATCCAATCCGCCGTTCACGGCTACC
TCGGTCCCGAAACCCAACAAGAGCTCGTTCGCAAAATGTACTCTCCTTCC
TATCCCTGCCATCTTCCTCACCTAAGATTCCACTCTACTAACGGATTACG
TGTTATGCATTCAGAAAGAACCTCACCCTCGCGCTCTCCACCCTCAGCAC
ACACACCTCCGATAATCACCCCGACGCACAATCACAATCACCAGGAAACA
GCAACGACCCTCCCATCCACAGCATCCAACTCCCCCCCGAGATTATCGAC
TACGTAGATGCAGCAAGGAATCCGGATATCTACACAAGAGAATTCGTGGA
GTTGATCCAGCGCGGGAACCAGGATCTGAGGGGGAAGAAGGAGGCGTTTG
GGAGTTTCCGGGATGTGTTAGCGAGGGAGATGAGGGGAGCGATGCCGGAG
GTTAGGGGGGAGGTGGATAGAGTGGTTGCTTCGTTCGGTGGTGATGGAAA
TGGGAATAATAATGGGGAGGGGAGGGGATGA back to topCoding sequence (CDS) from alignment at ch8:839868..840498- >KJC3_011511-T1 ID=KJC3_011511-T1|Name=KJC3_011511-T1|organism=Aspergillus niger KJC3|type=CDS|length=1485bp|location=Sequence derived from alignment at ch8:839868..840498- (Aspergillus niger KJC3)
AAAGAACCTCACCCTCGCGCTCTCCACCCTCAGCACACACACCTCCGATA
ATCACCCCGACGCACAATCACAATCACCAGGAAACAGCAACGACCCTCCC
ATCCACAGCATCCAACTCCCCCCCGAGATTATCGACTACGTAGATGCAGC
AAGGAATCCGGATATCTACACAAGAGAATTCGTGGAGTTGATCCAGCGCG
GGAACCAGGATCTGAGGGGGAAGAAGGAGGCGTTTGGGAGTTTCCGGGAT
GTGTTAGCGAGGGAGATGAGGGGAGCGATGCCGGAGGTTAGGGGGGAGGT
GGATAGAGTGGTTGCTTCGTTCGGTGGTGATGGAAATGGGAATAATAATG
GGGAGGGGAGGGGATGACCGACCTCAAAGACGTAATCCAACACCTCTTTG
AAATCCAATCCGCCGTTCACGGCTACCTCGGTCCCGAAACCCAACAAGAG
CTCGTTCGCAAAATATGGCTCCCATCCCGCTCAGCACGGTCGACAAAAGA
ACCTCACCCTCGCGCTCTCCACCCTCAGCACACACACCTCCGATAATCAC
CCCGACGCACAATCACAATCACCAGGAAACAGCAACGACCCTCCCATCCA
CAGCATCCAACTCCCCCCCGAGATTATCGACTACGTAGATGCAGCAAGGA
ATCCGGATATCTACACAAGAGAATTCGTGGAGTTGATCCAGCGCGGGAAC
CAGGATCTGAGGGGGAAGAAGGAGGCGTTTGGGAGTTTCCGGGATGTGTT
AGCGAGGGAGATGAGGGGAGCGATGCCGGAGGTTAGGGGGGAGGTGGATA
GAGTGGTTGCTTCGTTCGGTGGTGATGGAAATGGGAATAATAATGGGGAG
GGGAGGGGATGACCGACCTCAAAGACGTAATCCAACACCTCTTTGAAATC
CAATCCGCCGTTCACGGCTACCTCGGTCCCGAAACCCAACAAGAGCTCGT
TCGCAAAATATGGCTCCCATCCCGCTCAGCACGGTCGACAAAAGAACCTC
ACCCTCGCGCTCTCCACCCTCAGCACACACACCTCCGATAATCACCCCGA
CGCACAATCACAATCACCAGGAAACAGCAACGACCCTCCCATCCACAGCA
TCCAACTCCCCCCCGAGATTATCGACTACGTAGATGCAGCAAGGAATCCG
GATATCTACACAAGAGAATTCGTGGAGTTGATCCAGCGCGGGAACCAGGA
TCTGAGGGGGAAGAAGGAGGCGTTTGGGAGTTTCCGGGATGTGTTAGCGA
GGGAGATGAGGGGAGCGATGCCGGAGGTTAGGGGGGAGGTGGATAGAGTG
GTTGCTTCGTTCGGTGGTGATGGAAATGGGAATAATAATGGGGAGGGGAG
GGGATGACCGACCTCAAAGACGTAATCCAACACCTCTTTGAAATCCAATC
CGCCGTTCACGGCTACCTCGGTCCCGAAACCCAACAAGAGCTCGTTCGCA
AAATATGGCTCCCATCCCGCTCAGCACGGTCGACA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016592 | mediator complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006357 | regulation of transcription by RNA polymerase II |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003712 | transcription coregulator activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264V30 |
| DBxref | InterPro:IPR019145 |
| DBxref | PFAM:PF09748 |
| Product | RNA polymerase II mediator complex subunit |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:839868..840498 - |
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