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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:1017803..1020003- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011570-T1 ID=KJC3_011570-T1|Name=KJC3_011570-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2201bp|location=Sequence derived from alignment at ch8:1017803..1020003- (Aspergillus niger KJC3)
GAGATAACCTCCTTCATCGATCGCTTTCACATACTAGTGGTCTCCCGACA
GCTGTGTCTGTTATTTCGAAATGGAGCCCCCAGCCAAGAGGTCGCGCAAG
CTGCTCGATGACGACAGCTCCAGCGACTCAGGAGACGAGTCCGGCGGAGT
TCCCATCACCAACGAGGACGTTACATTCAAGATCAACGAAGAGTATGCGC
GCCGCTTCGAATACAACAAGAAGAGAGAAGAAAAGCAGCAATGTAAGTTC
CTATGCATCTACAATCTGCATGCGAGGAGAAACTAATCTCTGTTCTACAA
TAGTGGAGTCTAAATACGGAAAATCTGTGCTTGGCAAACGTCGTGATCGC
GATGGTGAAGATGAGTCCGGCGACTCGGAGGATGATTCTACCTCTGAAGA
AGAGGACGAGGATGGAGAATTAGCCACCGCCGCCCTGGATGCCGAGATTA
TGGCCACGCTGAACGCGATCAGATCAAAGGACCCTCGGGTGTACGATAGC
AATGCCACTTTCTACACCGGGACCGACGAGGAGGCGAAACCCGAAAGCTC
TGAAAAGAAAGAAAAGCCTATGACCCTTCGTGACTACCATCGTGAGAATT
TGTTGAGTGGCGCCAATTTGGCAGATGAGGACGCATCTGAGGCGCCGAAG
ACCTACGCTCAAGAGCAGGAGGAATTGAAGGATGCGGTTGTCCGTGAAAT
GCACGCCGCTGCCGGTAAAGGTGATGATGGTGAGGACGACGAAGATGACT
TCCTTGTTGCCAAATCGGCGCCTGAACCTCTTCCGGCGGCCAAGAAGGAT
GTCAATCTGGATGTTGAGAATGCGGACAAGGACCCGGAAACCTTCCTTTC
AAACTTCATGTCGGCAAGAGCGTGGATACCTGCTGGTAGATCGGAACTTC
AACCGTTCGAGTCTGATGACGAAGAGGAAGATCAACGGGCAGAGGCATTC
GAAGAGGCATACAACTTCCGCTTCGAAGATCCCAGCAAAATCAACGCTAC
CTTAATCACTCACTCTCGTGACACAACCAACAAGCAGTCGGTTCGCAGAG
AAGAAAAGAGCAGCCGAAAGAAACGCAGAGATGCGGAGAGGCAGCAGATG
GAAGAGGAGAAGAAGCAGCGCGAGACGGAAAAGAACCGCCTGCGGAAGCT
CAAGATGGAAGAACTTCAAGAGAAGGTCAATCAGATCAAGGAAGTTGCCG
GCATTCGTGCAAATGAGCTGACTGACGAAGATTGGGTCAGCTTCTTGGAC
GCTGCCTGGGATGACAAGAACTGGGAGGAGGAGATGCAGAAGCGTTTTGG
TGAAGATTACTACGCGGAGGGCGATAAGGAAGGAAGCGGTGACGAGTCAG
GAAAGAAGAAGCGTCTGAAGAAGCCTACGTGGGATGATGATATTGATATC
AAGGATCTCGTGCCCGACTTCGAGGAAGAGGAGAAGCCCGCCGTGGATGG
TTCTGATGTCGAGATGGAGGATGATGAAGAGGGAAGTAACAAGAAGAGCA
AGGCGCAGGAGAGACGAGACCAGAAGCGTGAAGCGCGCAAAGACCGACTT
CGTATTCAGGAGGCCGTGGATCGCAACTTGGATCTTGATATCAGCCTTCT
TCCGGGTGCGACCAGGAAGAATGCTACTGGGTTCCGCTACCGTGAGACCT
CGCCTCAGAGTTTTGGATTGACTGCACGAGATATCCTCATGGCCGACGAC
ACCCATTTGAACCAGTTTGCGGGCTTGAAAAAGCTTGCTTCGTTCCGTGA
CCCTGAGAAGAAGAGCCGGGATCAGAGGAAGCTGGGCAAGAAGGCCCGCC
TAAGGCAGTGGCGCAAGGACACCTTTGGTGACGAAGAAGGCCCCAGGGTT
CCCTCGGAGGCGCCACGGGCACCTACGCCGGACAAGGAGGATGCCGGTAA
GGTTGATATTCGTGAAGGTGAACCCAAGAAGAAGAGGAGAAAGAGAAACA
AGAAGAACTGAACCTGGGGTGCTTCTTACTGTACATGCATCTGGGAATTT
TATGATATACTAGACAGTATTGTTCATTGTTCAATAACGGCGTATCGGTA
ATGAAAGCTGTCTACGCCGTTGGTAGATAAGCTGGTCAAAAGTTACAAAT
ATATTTACCTACTGCATAGCAAAGAGTTTTATTGAATTCAACTAGGGACA
ACAGTTGGTTGACCTTTGTGCCAATACTCTAGTATAAGCAAGGTGCTCTA
G back to topCoding sequence (CDS) from alignment at ch8:1017803..1020003- >KJC3_011570-T1 ID=KJC3_011570-T1|Name=KJC3_011570-T1|organism=Aspergillus niger KJC3|type=CDS|length=3660bp|location=Sequence derived from alignment at ch8:1017803..1020003- (Aspergillus niger KJC3)
TGGAGTCTAAATACGGAAAATCTGTGCTTGGCAAACGTCGTGATCGCGAT
GGTGAAGATGAGTCCGGCGACTCGGAGGATGATTCTACCTCTGAAGAAGA
GGACGAGGATGGAGAATTAGCCACCGCCGCCCTGGATGCCGAGATTATGG
CCACGCTGAACGCGATCAGATCAAAGGACCCTCGGGTGTACGATAGCAAT
GCCACTTTCTACACCGGGACCGACGAGGAGGCGAAACCCGAAAGCTCTGA
AAAGAAAGAAAAGCCTATGACCCTTCGTGACTACCATCGTGAGAATTTGT
TGAGTGGCGCCAATTTGGCAGATGAGGACGCATCTGAGGCGCCGAAGACC
TACGCTCAAGAGCAGGAGGAATTGAAGGATGCGGTTGTCCGTGAAATGCA
CGCCGCTGCCGGTAAAGGTGATGATGGTGAGGACGACGAAGATGACTTCC
TTGTTGCCAAATCGGCGCCTGAACCTCTTCCGGCGGCCAAGAAGGATGTC
AATCTGGATGTTGAGAATGCGGACAAGGACCCGGAAACCTTCCTTTCAAA
CTTCATGTCGGCAAGAGCGTGGATACCTGCTGGTAGATCGGAACTTCAAC
CGTTCGAGTCTGATGACGAAGAGGAAGATCAACGGGCAGAGGCATTCGAA
GAGGCATACAACTTCCGCTTCGAAGATCCCAGCAAAATCAACGCTACCTT
AATCACTCACTCTCGTGACACAACCAACAAGCAGTCGGTTCGCAGAGAAG
AAAAGAGCAGCCGAAAGAAACGCAGAGATGCGGAGAGGCAGCAGATGGAA
GAGGAGAAGAAGCAGCGCGAGACGGAAAAGAACCGCCTGCGGAAGCTCAA
GATGGAAGAACTTCAAGAGAAGGTCAATCAGATCAAGGAAGTTGCCGGCA
TTCGTGCAAATGAGCTGACTGACGAAGATTGGGTCAGCTTCTTGGACGCT
GCCTGGGATGACAAGAACTGGGAGGAGGAGATGCAGAAGCGTTTTGGTGA
AGATTACTACGCGGAGGGCGATAAGGAAGGAAGCGGTGACGAGTCAGGAA
AGAAGAAGCGTCTGAAGAAGCCTACGTGGGATGATGATATTGATATCAAG
GATCTCGTGCCCGACTTCGAGGAAGAGGAGAAGCCCGCCGTGGATGGTTC
TGATGTCGAGATGGAGGATGATGAAGAGGGAAGTAACAAGAAGAGCAAGG
CGCAGGAGAGACGAGACCAGAAGCGTGAAGCGCGCAAAGACCGACTTCGT
ATTCAGGAGGCCGTGGATCGCAACTTGGATCTTGATATCAGCCTTCTTCC
GGGTGCGACCAGGAAGAATGCTACTGGGTTCCGCTACCGTGAGACCTCGC
CTCAGAGTTTTGGATTGACTGCACGAGATATCCTCATGGCCGACGACACC
CATTTGAACCAGTTTGCGGGCTTGAAAAAGCTTGCTTCGTTCCGTGACCC
TGAGAAGAAGAGCCGGGATCAGAGGAAGCTGGGCAAGAAGGCCCGCCTAA
GGCAGTGGCGCAAGGACACCTTTGGTGACGAAGAAGGCCCCAGGGTTCCC
TCGGAGGCGCCACGGGCACCTACGCCGGACAAGGAGGATGCCGGTAAGGT
TGATATTCGTGAAGGTGAACCCAAGAAGAAGAGGAGAAAGAGAAACAAGA
AGAACTGAATGGAGCCCCCAGCCAAGAGGTCGCGCAAGCTGCTCGATGAC
GACAGCTCCAGCGACTCAGGAGACGAGTCCGGCGGAGTTCCCATCACCAA
CGAGGACGTTACATTCAAGATCAACGAAGAGTATGCGCGCCGCTTCGAAT
ACAACAAGAAGAGAGAAGAAAAGCAGCAATTGGAGTCTAAATACGGAAAA
TCTGTGCTTGGCAAACGTCGTGATCGCGATGGTGAAGATGAGTCCGGCGA
CTCGGAGGATGATTCTACCTCTGAAGAAGAGGACGAGGATGGAGAATTAG
CCACCGCCGCCCTGGATGCCGAGATTATGGCCACGCTGAACGCGATCAGA
TCAAAGGACCCTCGGGTGTACGATAGCAATGCCACTTTCTACACCGGGAC
CGACGAGGAGGCGAAACCCGAAAGCTCTGAAAAGAAAGAAAAGCCTATGA
CCCTTCGTGACTACCATCGTGAGAATTTGTTGAGTGGCGCCAATTTGGCA
GATGAGGACGCATCTGAGGCGCCGAAGACCTACGCTCAAGAGCAGGAGGA
ATTGAAGGATGCGGTTGTCCGTGAAATGCACGCCGCTGCCGGTAAAGGTG
ATGATGGTGAGGACGACGAAGATGACTTCCTTGTTGCCAAATCGGCGCCT
GAACCTCTTCCGGCGGCCAAGAAGGATGTCAATCTGGATGTTGAGAATGC
GGACAAGGACCCGGAAACCTTCCTTTCAAACTTCATGTCGGCAAGAGCGT
GGATACCTGCTGGTAGATCGGAACTTCAACCGTTCGAGTCTGATGACGAA
GAGGAAGATCAACGGGCAGAGGCATTCGAAGAGGCATACAACTTCCGCTT
CGAAGATCCCAGCAAAATCAACGCTACCTTAATCACTCACTCTCGTGACA
CAACCAACAAGCAGTCGGTTCGCAGAGAAGAAAAGAGCAGCCGAAAGAAA
CGCAGAGATGCGGAGAGGCAGCAGATGGAAGAGGAGAAGAAGCAGCGCGA
GACGGAAAAGAACCGCCTGCGGAAGCTCAAGATGGAAGAACTTCAAGAGA
AGGTCAATCAGATCAAGGAAGTTGCCGGCATTCGTGCAAATGAGCTGACT
GACGAAGATTGGGTCAGCTTCTTGGACGCTGCCTGGGATGACAAGAACTG
GGAGGAGGAGATGCAGAAGCGTTTTGGTGAAGATTACTACGCGGAGGGCG
ATAAGGAAGGAAGCGGTGACGAGTCAGGAAAGAAGAAGCGTCTGAAGAAG
CCTACGTGGGATGATGATATTGATATCAAGGATCTCGTGCCCGACTTCGA
GGAAGAGGAGAAGCCCGCCGTGGATGGTTCTGATGTCGAGATGGAGGATG
ATGAAGAGGGAAGTAACAAGAAGAGCAAGGCGCAGGAGAGACGAGACCAG
AAGCGTGAAGCGCGCAAAGACCGACTTCGTATTCAGGAGGCCGTGGATCG
CAACTTGGATCTTGATATCAGCCTTCTTCCGGGTGCGACCAGGAAGAATG
CTACTGGGTTCCGCTACCGTGAGACCTCGCCTCAGAGTTTTGGATTGACT
GCACGAGATATCCTCATGGCCGACGACACCCATTTGAACCAGTTTGCGGG
CTTGAAAAAGCTTGCTTCGTTCCGTGACCCTGAGAAGAAGAGCCGGGATC
AGAGGAAGCTGGGCAAGAAGGCCCGCCTAAGGCAGTGGCGCAAGGACACC
TTTGGTGACGAAGAAGGCCCCAGGGTTCCCTCGGAGGCGCCACGGGCACC
TACGCCGGACAAGGAGGATGCCGGTAAGGTTGATATTCGTGAAGGTGAAC
CCAAGAAGAAGAGGAGAAAGAGAAACAAGAAGAACTGAATGGAGCCCCCA
GCCAAGAGGTCGCGCAAGCTGCTCGATGACGACAGCTCCAGCGACTCAGG
AGACGAGTCCGGCGGAGTTCCCATCACCAACGAGGACGTTACATTCAAGA
TCAACGAAGAGTATGCGCGCCGCTTCGAATACAACAAGAAGAGAGAAGAA
AAGCAGCAAT back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011570-T1.utr3p1 | KJC3_011570-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011570-T1.utr5p1 | KJC3_011570-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09262POL |
| DBxref | InterPro:IPR018034 |
| DBxref | InterPro:IPR024626 |
| DBxref | PFAM:PF12936 |
| DBxref | PFAM:PF05178 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:1017803..1020003 - |
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