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KJC3_011578-T1, KJC3_011578-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_011578-T1
Unique NameKJC3_011578-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:1039559..1040823+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_011578-T1 ID=KJC3_011578-T1|Name=KJC3_011578-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1265bp|location=Sequence derived from alignment at ch8:1039559..1040823+ (Aspergillus niger KJC3)
GTGAAATCTTTGATGTATGACTATGATACCTGATGTGAGATGTTGGATAA
ACCAGTCTGATACTGTAGTGATATTCGTAGCGATACTCGTAGTATATGGC
AAAAAAAGGTCGCTGAGTAGTAGCACCGCAGTAAACATGCATATCACGTG
ACATACAACTTTAACCTCATCGCATCCCACGTGACCATGACTAATGCGTA
GGGCACACATTTAGCGAGAAAGTAGCCCAAAATTGCGCGCACCACTCGCC
CAGCACCACCACCTACTAGTCTATACAAGAACAAACACCTCGACTCTTTG
AGGATAATCCGACATCTCGTCATACAACACAACTTTCAAAATGGTGCGCC
CACCCCCTTTCCTTCCTCCCCCCTCAATATACACAACAACACCACCACCA
CCACCAACAATATACTAACAATGGATATTAAATGAATACAGTCGGACGGA
GAAGAGACCCAATCCAACCCCGTTGTCGCCGCCGATGAGGTCGAGGTTTC
GGCCGACGCTGGCGCCGGTGGCCAGATGTCCGTCCTGGATGCCCTGAAGG
GAGTTCTCCGTATCTCTCTCATCCACGACGGACTTGCCCGTGGTCTGCGC
GAGGCCGCTAAGGCCCTGGACCGTCGTCAGGCTCACATGTGTGTCCTGAA
CGAGGGCTGCGAGGAGGAGGCCTACAAGAAGCTTGTTGTGGCTCTTTGCT
CCGAGCACAAGATCCCCCTCATCAAGGTCCCCGATGGAAAGATGCTTGGC
GAGTGGGTTGGTCTTTGTAAGTACCCTTTGGTTCCTTTGAAGATTTGACC
GTGTGGGTGATGTGTTTTGCTAATTGGGGTTTGTGGTATAGGCCAGCTCG
ACCGTGAGGGTAACGCCCGCAAGGTCGTCAACTGCTCTTGCGTCGTCGTT
AAGGACTGGGGTGAGGAGTCCCAGGAGCGCTCTGTCCTCCTTAACTACTT
CCAGACTGAGCAGTAAATTGCTCGTTTTCCCATGAAGTCTGAGTTGTAGT
AGGGGTTTCACCTTTTTTTTTTTTACCCCCTGGGTGGTGTGATTCGGTCG
GTGGTGGGGTCCGCGGGGGTTTGTATGTGGTCGGTGGTGAGCGATATCTT
TGGGGAGGGACGGGGTTTGTGAATTCGGTTTTACGGGCTACGGATCTCTC
TTGAGTGTGCGTGCTGCTACTGCTGCGCGTGTCTCTTGCTACCTGCATGT
TGCCCACCTGTTGTATCTAGCTACGATTTGGGTGTCTCTTTTATGATGAC
GTGGATCAAACAATT
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Coding sequence (CDS) from alignment at ch8:1039559..1040823+

>KJC3_011578-T1 ID=KJC3_011578-T1|Name=KJC3_011578-T1|organism=Aspergillus niger KJC3|type=CDS|length=1359bp|location=Sequence derived from alignment at ch8:1039559..1040823+ (Aspergillus niger KJC3)
ATGTCGGACGGAGAAGAGACCCAATCCAACCCCGTTGTCGCCGCCGATGA
GGTCGAGGTTTCGGCCGACGCTGGCGCCGGTGGCCAGATGTCCGTCCTGG
ATGCCCTGAAGGGAGTTCTCCGTATCTCTCTCATCCACGACGGACTTGCC
CGTGGTCTGCGCGAGGCCGCTAAGGCCCTGGACCGTCGTCAGGCTCACAT
GTGTGTCCTGAACGAGGGCTGCGAGGAGGAGGCCTACAAGAAGCTTGTTG
TGGCTCTTTGCTCCGAGCACAAGATCCCCCTCATCAAGGTCCCCGATGGA
AAGATGCTTGGCGAGTGGGTTGGTCTTTGCCAGCTCGACCGTGAGGGTAA
CGCCCGCAAGGTCGTCAACTGCTCTTGCGTCGTCGTTAAGGACTGGGGTG
AGGAGTCCCAGGAGCGCTCTGTCCTCCTTAACTACTTCCAGACTGAGCAG
TAAATGTCGGACGGAGAAGAGACCCAATCCAACCCCGTTGTCGCCGCCGA
TGAGGTCGAGGTTTCGGCCGACGCTGGCGCCGGTGGCCAGATGTCCGTCC
TGGATGCCCTGAAGGGAGTTCTCCGTATCTCTCTCATCCACGACGGACTT
GCCCGTGGTCTGCGCGAGGCCGCTAAGGCCCTGGACCGTCGTCAGGCTCA
CATGTGTGTCCTGAACGAGGGCTGCGAGGAGGAGGCCTACAAGAAGCTTG
TTGTGGCTCTTTGCTCCGAGCACAAGATCCCCCTCATCAAGGTCCCCGAT
GGAAAGATGCTTGGCGAGTGGGTTGGTCTTTGCCAGCTCGACCGTGAGGG
TAACGCCCGCAAGGTCGTCAACTGCTCTTGCGTCGTCGTTAAGGACTGGG
GTGAGGAGTCCCAGGAGCGCTCTGTCCTCCTTAACTACTTCCAGACTGAG
CAGTAAATGTCGGACGGAGAAGAGACCCAATCCAACCCCGTTGTCGCCGC
CGATGAGGTCGAGGTTTCGGCCGACGCTGGCGCCGGTGGCCAGATGTCCG
TCCTGGATGCCCTGAAGGGAGTTCTCCGTATCTCTCTCATCCACGACGGA
CTTGCCCGTGGTCTGCGCGAGGCCGCTAAGGCCCTGGACCGTCGTCAGGC
TCACATGTGTGTCCTGAACGAGGGCTGCGAGGAGGAGGCCTACAAGAAGC
TTGTTGTGGCTCTTTGCTCCGAGCACAAGATCCCCCTCATCAAGGTCCCC
GATGGAAAGATGCTTGGCGAGTGGGTTGGTCTTTGCCAGCTCGACCGTGA
GGGTAACGCCCGCAAGGTCGTCAACTGCTCTTGCGTCGTCGTTAAGGACT
GGGGTGAGGAGTCCCAGGAGCGCTCTGTCCTCCTTAACTACTTCCAGACT
GAGCAGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS12KJC3_011578Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011578-T1KJC3_011578-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011578-T1.utr5p1KJC3_011578-T1.utr5p1Aspergillus niger KJC3five_prime_UTR
KJC3_011578-T1.utr5p2KJC3_011578-T1.utr5p2Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011578-T1.exon1KJC3_011578-T1.exon1Aspergillus niger KJC3exon
KJC3_011578-T1.exon2KJC3_011578-T1.exon2Aspergillus niger KJC3exon
KJC3_011578-T1.exon3KJC3_011578-T1.exon3Aspergillus niger KJC3exon
KJC3_011578-T1.exon4KJC3_011578-T1.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011578-T1.cdsKJC3_011578-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011578-T1.utr3p1KJC3_011578-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09265CN0
DBxrefInterPro:IPR029064
DBxrefInterPro:IPR004038
DBxrefInterPro:IPR000530
DBxrefPFAM:PF01248
Product40S ribosomal protein S12
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:1039559..1040823 +
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