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KJC3_011593-T1, KJC3_011593-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_011593-T1
Unique NameKJC3_011593-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:1087026..1088109-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_011593-T1 ID=KJC3_011593-T1|Name=KJC3_011593-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1084bp|location=Sequence derived from alignment at ch8:1087026..1088109- (Aspergillus niger KJC3)
CCGCATCTCGCCCATCAGCCAAAGCCCAACACCACAAAAACCAAAATGTT
TCCCACGCGAGCTCTCTTCTCCCGCTCGGTCTGGAAGGGTGAGAATACCC
CATCGAAGTCCCTATTTTAAATCACTGGAGAAATTGAATCCATCTAACCT
GCATACCTACAGGCCCGAACATCGTCCCGTACGTCGTCGCATTTATTCCC
TTTCCTTCCCTACCTTTCACGAAAGGCACATCACTACCCAATCCCTATAC
AATACCGCCACATATCAATTGCAACCGCTACTCGACACATTCTCTACTGG
AAACTGGAAATAAAATACTAATAAAAGCTATGATAGTCTCCCTCTCCCCC
GCAAACTCCCCGCTCCGCCAGGAACACCACCGATCAAGACGCAGAAGCGC
GGCGCCACGATCCTGCCTAACTTCGTGGGATTGAAGTTCCAGGTCCACAA
TGGGAAGATTTATCAGGATGTTGTGATCACGGAGGAGATGGTCGGCAGGA
AGTTGGGGGAGTTTGTTGCGTGAGTTTTTTCCCTATCCAACTCTCTTCTT
TTTTTTTCTTTTTCGCCTGGGGGGTTTGGAGTGGGATATAGGAAATGTGG
TGAACTTGGAGGATTTGAAGGTTGAAAGGAAAGAGGGAATATTTGGTGGA
ATGGGATATTGATTGGTGTATGATGATGGACTTTCTGCTAACTGATTGGT
TTTGGTAGGACTCGGAAGAGGTTCACGTATAAGCAGTCGAAGAACAAATG
ATTGCTTTTCGGGTTGTGTGTTTGTCTGGCTGGCTGGCTGGGTGGTCTGT
TTTATTCTATATGCAGTGCAGCGGGTGTCTCTACTGAGTCCCTTCTGCGT
GTAGCTGAATTGTCAGCATAAGAGGAATATCAGGCAGGCAGACAGACAGA
CAGACAAGGCAGATGGGCACACAGGTGGTGATTTCATATTGCATGGCTAG
GTTCTTTTCTTATATCTCGGGCGTTATATCCAGTTCCTTACTGCTATTTT
TCCACCAATGTATATCTACGTGTTGCATGTAAACTACTAGACGGACCATA
AAATCAACAGGTCAATGGACTTCTCAACACAGAA
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Coding sequence (CDS) from alignment at ch8:1087026..1088109-

>KJC3_011593-T1 ID=KJC3_011593-T1|Name=KJC3_011593-T1|organism=Aspergillus niger KJC3|type=CDS|length=1140bp|location=Sequence derived from alignment at ch8:1087026..1088109- (Aspergillus niger KJC3)
GACTCGGAAGAGGTTCACGTATAAGCAGTCGAAGAACAAATGATCTCCCT
CTCCCCCGCAAACTCCCCGCTCCGCCAGGAACACCACCGATCAAGACGCA
GAAGCGCGGCGCCACGATCCTGCCTAACTTCGTGGGATTGAAGTTCCAGG
TCCACAATGGGAAGATTTATCAGGATGTTGTGATCACGGAGGAGATGGTC
GGCAGGAAGTTGGGGGAGTTTGTTGCGCCCGAACATCGTCCCATGTTTCC
CACGCGAGCTCTCTTCTCCCGCTCGGTCTGGAAGGGACTCGGAAGAGGTT
CACGTATAAGCAGTCGAAGAACAAATGATCTCCCTCTCCCCCGCAAACTC
CCCGCTCCGCCAGGAACACCACCGATCAAGACGCAGAAGCGCGGCGCCAC
GATCCTGCCTAACTTCGTGGGATTGAAGTTCCAGGTCCACAATGGGAAGA
TTTATCAGGATGTTGTGATCACGGAGGAGATGGTCGGCAGGAAGTTGGGG
GAGTTTGTTGCGCCCGAACATCGTCCCATGTTTCCCACGCGAGCTCTCTT
CTCCCGCTCGGTCTGGAAGGGACTCGGAAGAGGTTCACGTATAAGCAGTC
GAAGAACAAATGATCTCCCTCTCCCCCGCAAACTCCCCGCTCCGCCAGGA
ACACCACCGATCAAGACGCAGAAGCGCGGCGCCACGATCCTGCCTAACTT
CGTGGGATTGAAGTTCCAGGTCCACAATGGGAAGATTTATCAGGATGTTG
TGATCACGGAGGAGATGGTCGGCAGGAAGTTGGGGGAGTTTGTTGCGCCC
GAACATCGTCCCATGTTTCCCACGCGAGCTCTCTTCTCCCGCTCGGTCTG
GAAGGGACTCGGAAGAGGTTCACGTATAAGCAGTCGAAGAACAAATGATC
TCCCTCTCCCCCGCAAACTCCCCGCTCCGCCAGGAACACCACCGATCAAG
ACGCAGAAGCGCGGCGCCACGATCCTGCCTAACTTCGTGGGATTGAAGTT
CCAGGTCCACAATGGGAAGATTTATCAGGATGTTGTGATCACGGAGGAGA
TGGTCGGCAGGAAGTTGGGGGAGTTTGTTGCGCCCGAACATCGTCCCATG
TTTCCCACGCGAGCTCTCTTCTCCCGCTCGGTCTGGAAGG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RSM19KJC3_011593Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011593-T1KJC3_011593-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011593-T1.cdsKJC3_011593-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011593-T1.utr3p1KJC3_011593-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011593-T1.exon4KJC3_011593-T1.exon4Aspergillus niger KJC3exon
KJC3_011593-T1.exon3KJC3_011593-T1.exon3Aspergillus niger KJC3exon
KJC3_011593-T1.exon2KJC3_011593-T1.exon2Aspergillus niger KJC3exon
KJC3_011593-T1.exon1KJC3_011593-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011593-T1.utr5p1KJC3_011593-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR020934
DBxrefInterPro:IPR023575
DBxrefInterPro:IPR002222
DBxrefPFAM:PF00203
Productmitochondrial ribosomal small subunit component
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:1087026..1088109 -
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