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KJC3_011608-T1, KJC3_011608-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_011608-T1
Unique NameKJC3_011608-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:1119649..1122207-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_011608-T1 ID=KJC3_011608-T1|Name=KJC3_011608-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2559bp|location=Sequence derived from alignment at ch8:1119649..1122207- (Aspergillus niger KJC3)
CGGGCATCAATCTCGCCACCACTCTGCCTTGATCGTGTTCGAGTGATCCC
TGCGGCTCACCATCTTAGCTTGGACTGTGAGAAACAATGGCGTACGGCAG
CCGAATGAGCCAGCAATTCCATGGCTCCCAGCAACACCACAATAGAGGTC
GCAAGAAGGAGGATGAGAATGATGCTCTTATGCGCCTGGTTAGTTCGCAG
TTGAACAAGGCCTCTTCGCTTACAATATCTAACGCTGCTATTAGCCGGAC
AAGGAAATCGCAGGATGCATTAATGACATAGGCATCCCCTTCACCGCCGC
CGACTTGATCAAGCCAAACCCGCAACAGATTCAAATGGTCTTTGAATGGT
TTGCCGAGCTCCTTATGAATATGACACGCGAAACCGTCGAGCCAGCGATG
CGAGCGGCGGCGGACGATATCTGTGGCGACTACCCCGACATTGTACCTAC
CGACACGCGCAACCTCATGGGGTTCTTTACCAGCTTACGGCGGTTGATGA
TGGAGGTGCGTATAAACCCGCTTCTTATTTGAAACAGATGAGCTCAGTCG
GACCTAACACGGCATATGGAAACATAGTGTGGTGTCAATGATTTTATGTT
TACCGATCTCACCAAGCCAACGCATGATCGACTCGTTAAGATATTCTCCT
ACCTCATCAACTTTGTCAGATTCCGCGAATCTCAAACGCCCGTTATTGAT
GAGCATTTCAACAAGGGCGAGAAGGTCAAGTCGCGCATTGACACCCTGTA
CACGGAGAACCAGGAGATGGAGCAGCGCCTCGAGGAAATGCGCCGGACTC
TGAAGGCCAACGAGGCACAGGTTAAGGAGAAGGTACGACGGAATGACGAG
TTGAAAGCACGGCTACTCGAATTGCGACGAAACCAAGAGCGAGTGGCCGA
GATGCTAGAAAGAGCCAAGGCGGATAAGGCAAGACGGCAAGCGCAGCTTG
AGGAGAAGACGGAAAAGGTCGTTCGTACGCGACAAGAAGTCGAGAAACTG
CGTCCCTATGTTATGGAGAGCCCCATCTCTCTCCAGTCGTCGCTGAGTGA
ATTGTCGGAAAATCTCCTTCGTGAGAAAGCGCAAATCGACGCGATGGAGA
AACGAGCGAGAGCTCTGCAAACATCATCGGACACGTTTACGGTCGTTAGT
AACGACGTGCAAGCTTGTGTGCGCCTTCTCGAAGATATATCCGTGGAACT
GCAAAAGGAAGATGATGAAGAGTCAAGGGCCTCTAGGAATAGAGAAGCCA
TTTCAGAGCGGGGGAATAATGTCAGGGAAGTGGAGCAGACCGAGAAGTTG
CTGCAGCGGCAGCTGGCACGATGGAATGAGAGGATCGAGGCTTTACGGAA
AAATGCTCAAGAAAAAGCCGAAGTAGCGCAGGCGCGCATGGAGGAACTCC
GGGAAGTTCAGAAACAACTCCGGGAGGAGCGAGCTGAAAAGCAACGCGAC
ATGGAGCGGAGGAGAATCCGGATCGAACAAACTGAGAAGAAGGTAAATGT
CTCTTGTTTCCTTCGGCTTTGCATGCTTTACTAATTTCCATCCAGATGGC
CGATCTCAAGGAGAACATTGAGAGCGAAATCCAAAGCGCTCACGATGAGT
ACTTGAAGTTGGAGTCACACATCAAACTCTATATCACGGACATGGAGAAA
TGCCTATAAATTTGGAAATTCATTATGGTGTCAAATCGGGAGTTTTAGGA
CTGGTTTAAGGATACCCGGTTGATTATGGGGGTTTATATTGTCTCATAGC
ACATATTTTGCTCTATTGCTGTCCTTTCAAATCGTCAAACGTCTATGTCT
GTAGTGTCCATAATCGGAGCCTCATCGTCATTGAATTCAAACCACCGCTG
CAGGACCCTTTTAACAGGTACTCTTCCCCCTCGATACGAAGTACTTTCCT
CCCCAACCCGCACAGAGCTATTCAACAGCGGCACCTGCGTATGCCATAAC
ACCTCCCCCCTCCCATTCCCACCCCCGTTAGAATCAACAGCATCCCTACA
TTCACACAGCACAAGATCCATCCCCTTTCGAGCCGCCACCTCCACCGCCG
CCGCAAACGTCCTAGACAACCCCTGGGCAGAGAACTCCGAAGTAGGAACA
TGTAAAGCCAACGGGCCCAGGATAGCCATCAGAGATGGAGTTCTTCTCGT
CTGCTCTTCCTTCTCCTCTGTAATTAACTCTCCTTGCAAGCCTCCTCCTC
CTGCTGCTTTCCCTTCCGGCGAACGTATCACAGACAAATACGCTCGAAGA
TTTTCCAGCGTAGGACAATAGACTATCTTGATACTGCTCGATTTAGAGAG
CACCCCGATGGTATTTTTAGTGAGTATCTGATGATGATGTCGGTGTTCTT
CAGTTCCTGATCCCGAGGAGGAAGAGGAGGAGGCGAGTAATAAATGCTCT
AAGAATTGCTCTTTTGTTGAGCATATGAGTAGTAGTGTGGTGGGAGCATC
TTGGGTGATGATGTATTGGAGGAAATCTATTACACGGTCGCTGGTGGTGT
AGATTTGTCGGGTTGGGGCTGTTCTGATCATTATTGGGATGGAGTTTTAG
AAAGTTATT
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Coding sequence (CDS) from alignment at ch8:1119649..1122207-

>KJC3_011608-T1 ID=KJC3_011608-T1|Name=KJC3_011608-T1|organism=Aspergillus niger KJC3|type=CDS|length=5568bp|location=Sequence derived from alignment at ch8:1119649..1122207- (Aspergillus niger KJC3)
ATGGCCGATCTCAAGGAGAACATTGAGAGCGAAATCCAAAGCGCTCACGA
TGAGTACTTGAAGTTGGAGTCACACATCAAACTCTATATCACGGACATGG
AGAAATGCCTATAATGTGGTGTCAATGATTTTATGTTTACCGATCTCACC
AAGCCAACGCATGATCGACTCGTTAAGATATTCTCCTACCTCATCAACTT
TGTCAGATTCCGCGAATCTCAAACGCCCGTTATTGATGAGCATTTCAACA
AGGGCGAGAAGGTCAAGTCGCGCATTGACACCCTGTACACGGAGAACCAG
GAGATGGAGCAGCGCCTCGAGGAAATGCGCCGGACTCTGAAGGCCAACGA
GGCACAGGTTAAGGAGAAGGTACGACGGAATGACGAGTTGAAAGCACGGC
TACTCGAATTGCGACGAAACCAAGAGCGAGTGGCCGAGATGCTAGAAAGA
GCCAAGGCGGATAAGGCAAGACGGCAAGCGCAGCTTGAGGAGAAGACGGA
AAAGGTCGTTCGTACGCGACAAGAAGTCGAGAAACTGCGTCCCTATGTTA
TGGAGAGCCCCATCTCTCTCCAGTCGTCGCTGAGTGAATTGTCGGAAAAT
CTCCTTCGTGAGAAAGCGCAAATCGACGCGATGGAGAAACGAGCGAGAGC
TCTGCAAACATCATCGGACACGTTTACGGTCGTTAGTAACGACGTGCAAG
CTTGTGTGCGCCTTCTCGAAGATATATCCGTGGAACTGCAAAAGGAAGAT
GATGAAGAGTCAAGGGCCTCTAGGAATAGAGAAGCCATTTCAGAGCGGGG
GAATAATGTCAGGGAAGTGGAGCAGACCGAGAAGTTGCTGCAGCGGCAGC
TGGCACGATGGAATGAGAGGATCGAGGCTTTACGGAAAAATGCTCAAGAA
AAAGCCGAAGTAGCGCAGGCGCGCATGGAGGAACTCCGGGAAGTTCAGAA
ACAACTCCGGGAGGAGCGAGCTGAAAAGCAACGCGACATGGAGCGGAGGA
GAATCCGGATCGAACAAACTGAGAAGAAGCCGGACAAGGAAATCGCAGGA
TGCATTAATGACATAGGCATCCCCTTCACCGCCGCCGACTTGATCAAGCC
AAACCCGCAACAGATTCAAATGGTCTTTGAATGGTTTGCCGAGCTCCTTA
TGAATATGACACGCGAAACCGTCGAGCCAGCGATGCGAGCGGCGGCGGAC
GATATCTGTGGCGACTACCCCGACATTGTACCTACCGACACGCGCAACCT
CATGGGGTTCTTTACCAGCTTACGGCGGTTGATGATGGAGATGGCGTACG
GCAGCCGAATGAGCCAGCAATTCCATGGCTCCCAGCAACACCACAATAGA
GGTCGCAAGAAGGAGGATGAGAATGATGCTCTTATGCGCCTGATGGCCGA
TCTCAAGGAGAACATTGAGAGCGAAATCCAAAGCGCTCACGATGAGTACT
TGAAGTTGGAGTCACACATCAAACTCTATATCACGGACATGGAGAAATGC
CTATAATGTGGTGTCAATGATTTTATGTTTACCGATCTCACCAAGCCAAC
GCATGATCGACTCGTTAAGATATTCTCCTACCTCATCAACTTTGTCAGAT
TCCGCGAATCTCAAACGCCCGTTATTGATGAGCATTTCAACAAGGGCGAG
AAGGTCAAGTCGCGCATTGACACCCTGTACACGGAGAACCAGGAGATGGA
GCAGCGCCTCGAGGAAATGCGCCGGACTCTGAAGGCCAACGAGGCACAGG
TTAAGGAGAAGGTACGACGGAATGACGAGTTGAAAGCACGGCTACTCGAA
TTGCGACGAAACCAAGAGCGAGTGGCCGAGATGCTAGAAAGAGCCAAGGC
GGATAAGGCAAGACGGCAAGCGCAGCTTGAGGAGAAGACGGAAAAGGTCG
TTCGTACGCGACAAGAAGTCGAGAAACTGCGTCCCTATGTTATGGAGAGC
CCCATCTCTCTCCAGTCGTCGCTGAGTGAATTGTCGGAAAATCTCCTTCG
TGAGAAAGCGCAAATCGACGCGATGGAGAAACGAGCGAGAGCTCTGCAAA
CATCATCGGACACGTTTACGGTCGTTAGTAACGACGTGCAAGCTTGTGTG
CGCCTTCTCGAAGATATATCCGTGGAACTGCAAAAGGAAGATGATGAAGA
GTCAAGGGCCTCTAGGAATAGAGAAGCCATTTCAGAGCGGGGGAATAATG
TCAGGGAAGTGGAGCAGACCGAGAAGTTGCTGCAGCGGCAGCTGGCACGA
TGGAATGAGAGGATCGAGGCTTTACGGAAAAATGCTCAAGAAAAAGCCGA
AGTAGCGCAGGCGCGCATGGAGGAACTCCGGGAAGTTCAGAAACAACTCC
GGGAGGAGCGAGCTGAAAAGCAACGCGACATGGAGCGGAGGAGAATCCGG
ATCGAACAAACTGAGAAGAAGCCGGACAAGGAAATCGCAGGATGCATTAA
TGACATAGGCATCCCCTTCACCGCCGCCGACTTGATCAAGCCAAACCCGC
AACAGATTCAAATGGTCTTTGAATGGTTTGCCGAGCTCCTTATGAATATG
ACACGCGAAACCGTCGAGCCAGCGATGCGAGCGGCGGCGGACGATATCTG
TGGCGACTACCCCGACATTGTACCTACCGACACGCGCAACCTCATGGGGT
TCTTTACCAGCTTACGGCGGTTGATGATGGAGATGGCGTACGGCAGCCGA
ATGAGCCAGCAATTCCATGGCTCCCAGCAACACCACAATAGAGGTCGCAA
GAAGGAGGATGAGAATGATGCTCTTATGCGCCTGATGGCCGATCTCAAGG
AGAACATTGAGAGCGAAATCCAAAGCGCTCACGATGAGTACTTGAAGTTG
GAGTCACACATCAAACTCTATATCACGGACATGGAGAAATGCCTATAATG
TGGTGTCAATGATTTTATGTTTACCGATCTCACCAAGCCAACGCATGATC
GACTCGTTAAGATATTCTCCTACCTCATCAACTTTGTCAGATTCCGCGAA
TCTCAAACGCCCGTTATTGATGAGCATTTCAACAAGGGCGAGAAGGTCAA
GTCGCGCATTGACACCCTGTACACGGAGAACCAGGAGATGGAGCAGCGCC
TCGAGGAAATGCGCCGGACTCTGAAGGCCAACGAGGCACAGGTTAAGGAG
AAGGTACGACGGAATGACGAGTTGAAAGCACGGCTACTCGAATTGCGACG
AAACCAAGAGCGAGTGGCCGAGATGCTAGAAAGAGCCAAGGCGGATAAGG
CAAGACGGCAAGCGCAGCTTGAGGAGAAGACGGAAAAGGTCGTTCGTACG
CGACAAGAAGTCGAGAAACTGCGTCCCTATGTTATGGAGAGCCCCATCTC
TCTCCAGTCGTCGCTGAGTGAATTGTCGGAAAATCTCCTTCGTGAGAAAG
CGCAAATCGACGCGATGGAGAAACGAGCGAGAGCTCTGCAAACATCATCG
GACACGTTTACGGTCGTTAGTAACGACGTGCAAGCTTGTGTGCGCCTTCT
CGAAGATATATCCGTGGAACTGCAAAAGGAAGATGATGAAGAGTCAAGGG
CCTCTAGGAATAGAGAAGCCATTTCAGAGCGGGGGAATAATGTCAGGGAA
GTGGAGCAGACCGAGAAGTTGCTGCAGCGGCAGCTGGCACGATGGAATGA
GAGGATCGAGGCTTTACGGAAAAATGCTCAAGAAAAAGCCGAAGTAGCGC
AGGCGCGCATGGAGGAACTCCGGGAAGTTCAGAAACAACTCCGGGAGGAG
CGAGCTGAAAAGCAACGCGACATGGAGCGGAGGAGAATCCGGATCGAACA
AACTGAGAAGAAGCCGGACAAGGAAATCGCAGGATGCATTAATGACATAG
GCATCCCCTTCACCGCCGCCGACTTGATCAAGCCAAACCCGCAACAGATT
CAAATGGTCTTTGAATGGTTTGCCGAGCTCCTTATGAATATGACACGCGA
AACCGTCGAGCCAGCGATGCGAGCGGCGGCGGACGATATCTGTGGCGACT
ACCCCGACATTGTACCTACCGACACGCGCAACCTCATGGGGTTCTTTACC
AGCTTACGGCGGTTGATGATGGAGATGGCGTACGGCAGCCGAATGAGCCA
GCAATTCCATGGCTCCCAGCAACACCACAATAGAGGTCGCAAGAAGGAGG
ATGAGAATGATGCTCTTATGCGCCTGATGGCCGATCTCAAGGAGAACATT
GAGAGCGAAATCCAAAGCGCTCACGATGAGTACTTGAAGTTGGAGTCACA
CATCAAACTCTATATCACGGACATGGAGAAATGCCTATAATGTGGTGTCA
ATGATTTTATGTTTACCGATCTCACCAAGCCAACGCATGATCGACTCGTT
AAGATATTCTCCTACCTCATCAACTTTGTCAGATTCCGCGAATCTCAAAC
GCCCGTTATTGATGAGCATTTCAACAAGGGCGAGAAGGTCAAGTCGCGCA
TTGACACCCTGTACACGGAGAACCAGGAGATGGAGCAGCGCCTCGAGGAA
ATGCGCCGGACTCTGAAGGCCAACGAGGCACAGGTTAAGGAGAAGGTACG
ACGGAATGACGAGTTGAAAGCACGGCTACTCGAATTGCGACGAAACCAAG
AGCGAGTGGCCGAGATGCTAGAAAGAGCCAAGGCGGATAAGGCAAGACGG
CAAGCGCAGCTTGAGGAGAAGACGGAAAAGGTCGTTCGTACGCGACAAGA
AGTCGAGAAACTGCGTCCCTATGTTATGGAGAGCCCCATCTCTCTCCAGT
CGTCGCTGAGTGAATTGTCGGAAAATCTCCTTCGTGAGAAAGCGCAAATC
GACGCGATGGAGAAACGAGCGAGAGCTCTGCAAACATCATCGGACACGTT
TACGGTCGTTAGTAACGACGTGCAAGCTTGTGTGCGCCTTCTCGAAGATA
TATCCGTGGAACTGCAAAAGGAAGATGATGAAGAGTCAAGGGCCTCTAGG
AATAGAGAAGCCATTTCAGAGCGGGGGAATAATGTCAGGGAAGTGGAGCA
GACCGAGAAGTTGCTGCAGCGGCAGCTGGCACGATGGAATGAGAGGATCG
AGGCTTTACGGAAAAATGCTCAAGAAAAAGCCGAAGTAGCGCAGGCGCGC
ATGGAGGAACTCCGGGAAGTTCAGAAACAACTCCGGGAGGAGCGAGCTGA
AAAGCAACGCGACATGGAGCGGAGGAGAATCCGGATCGAACAAACTGAGA
AGAAGCCGGACAAGGAAATCGCAGGATGCATTAATGACATAGGCATCCCC
TTCACCGCCGCCGACTTGATCAAGCCAAACCCGCAACAGATTCAAATGGT
CTTTGAATGGTTTGCCGAGCTCCTTATGAATATGACACGCGAAACCGTCG
AGCCAGCGATGCGAGCGGCGGCGGACGATATCTGTGGCGACTACCCCGAC
ATTGTACCTACCGACACGCGCAACCTCATGGGGTTCTTTACCAGCTTACG
GCGGTTGATGATGGAGATGGCGTACGGCAGCCGAATGAGCCAGCAATTCC
ATGGCTCCCAGCAACACCACAATAGAGGTCGCAAGAAGGAGGATGAGAAT
GATGCTCTTATGCGCCTG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0031262Ndc80 complex
GO:0000776kinetochore
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NUF2KJC3_011608Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011608-T1KJC3_011608-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011608-T1.cdsKJC3_011608-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011608-T1.utr3p1KJC3_011608-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011608-T1.exon4KJC3_011608-T1.exon4Aspergillus niger KJC3exon
KJC3_011608-T1.exon3KJC3_011608-T1.exon3Aspergillus niger KJC3exon
KJC3_011608-T1.exon2KJC3_011608-T1.exon2Aspergillus niger KJC3exon
KJC3_011608-T1.exon1KJC3_011608-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011608-T1.utr5p1KJC3_011608-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR041112
DBxrefInterPro:IPR038275
DBxrefInterPro:IPR005549
DBxrefPFAM:PF03800
DBxrefPFAM:PF18595
Productkinetochore-associated Ndc80 complex subunit nuf2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:1119649..1122207 -
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