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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:1193941..1195736+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011635-T1 ID=KJC3_011635-T1|Name=KJC3_011635-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1796bp|location=Sequence derived from alignment at ch8:1193941..1195736+ (Aspergillus niger KJC3)
GGCAGCGGTCATGCAGCGCGGCTGAGTCAGCCCCAAATCCCCCAACGGAT
TTGCTTCTCGCGTCGCTTTTTGTGTTTTGGGCGGTTGGCTCCTTTGGTCC
TTGCTGCATCAACTGTCGCTACTCGCTTCATCCTGGATGTGTGCATGCTT
GCATCGGTTGCCGTCCTTGGCTGGCCCGACGGCGAGAGATAAATAGATCC
TCGGTGCTGCCCCTGGCCACTCCTCATTTACTACTTCTCTCCTCTCGGTC
GGTAAACTCCAACGTCTCCGGGTCTCCACCATGGCTAGTTTCTAGACCAA
CTAACCTCACTAGTCTCCGCCCTCCTGCTGCTCCCTCCTCCTCTGTCTTG
TTCTCCTGCTCCCCTATCTCCCCTCTGCAAGAGTGGATAATTTTCCGGTT
CTCTCATCCTAACTTCTCTCCGCTTGGTCGGAGGAGCGGTCAACCGGCAT
GTTGGATCCTTTTCCACCCCCGCCAGCATGGCTGCGGGATTTCGTTGAGC
CATGGGCGCTTCATTACAACGTTCCTGCTCTGACGGAGCATGCTCACGAG
GTCATTATTGCTTTTGCCGGCTACCTTTTTATCCACTTCATCTTATCCCC
CGTTCTGTCTCCGGTGCTTTTCCCCAATCACTACCCGAAACTCAAACCCC
GGACCAAGCTCAACTGGGACGTTCATGTCGTCTCGCTGGTGCAGAGCACC
TTCATCAATGGCATGGCCCTTTGGGTCATGTTTGCCGATGAAGACCGGGC
TTCTATGAACGCCTCTGAACGTATCTATGGGTATACTGGAGCCTGTGGAC
TGGTGTCCGCCTTCGCTGCCGGATACTTTGTCTACGATCTGATCGTCAGC
ACGATCTACGTTAAGCTCTTTGGGATCGGAATGCTTTTCCATGGCATTAG
CGCCCTGTGGGTGTTCAGTTTTGGATTTGTGAGTTGTGACCTATTTCAGC
TTTACAGTTTGCGTCAATAAGCTAATCATTTGGCTTGTGCTATCATCACA
GAGACCATTCGTGAACTTCTACTCCCCCGTCTTCATCCTCTATGAGCTCT
CCAGCCCCTTCCTCAATATCCACTGGTTCCTCGACAAGGTCAACATGACC
GGCAGCAACCTGCAGTGGTACAATGGCATGATGCTTCTCTTCACCTTCTT
CAGCTGCCGTCTCCTTTGGGGCACATACCAGTCCGTCGCCGTCTATCGGG
ACATGTGGTACGCCTTGAAACAGACCTGGGATGCCACTGCAGCTGCCACT
CCCCTCGAACCCGTCGATCTCACCTCTCAAGTCTTCCAGGTCCGCGGAGG
CAGCGGCAGTGAAATGGCTAAGTACGCCTCCTTCACCGCCGGCGGCGTCC
CCACCTGGCTGGTCCTGACTTACGTGATCTCGAACGTGGTTCTCAACTTC
CTGAACTACTTCTGGTTCTCGAAGATGGTCGAGACCGTCCTGAAGCGGTT
CCGCGGGCCCGCCGAGAAGTCCGGACCGGCCGGTAAGCCCTCTAAGGAGG
AGCAAATCAGCCATCTGAAGGAGGAGATCACGCAGAAGGTCGTCCTGGAA
GCGGCCTCCAAGCTGGAACAGGAGGAAGGTAGCCCTTTCCTCGATGGAGT
GTCTGAGGAGAAAGTCGCTTCGGCTGTCGACTCGGGGCTTACCGAGGAAT
TGAGGAAGAGGAAAGTCCAGTTGTCATCCTAGTCTGCTCCTTAACCTGGT
TTTCGGAACCTGCTTCAATGCAGCAGCAGCAGCAGCAGCAATCCAAAGAG
GAACAACATCACTCGCCATACCATTAGCCCTACAATAAACAGCCTC back to topCoding sequence (CDS) from alignment at ch8:1193941..1195736+ >KJC3_011635-T1 ID=KJC3_011635-T1|Name=KJC3_011635-T1|organism=Aspergillus niger KJC3|type=CDS|length=2322bp|location=Sequence derived from alignment at ch8:1193941..1195736+ (Aspergillus niger KJC3)
ATGTTGGATCCTTTTCCACCCCCGCCAGCATGGCTGCGGGATTTCGTTGA
GCCATGGGCGCTTCATTACAACGTTCCTGCTCTGACGGAGCATGCTCACG
AGGTCATTATTGCTTTTGCCGGCTACCTTTTTATCCACTTCATCTTATCC
CCCGTTCTGTCTCCGGTGCTTTTCCCCAATCACTACCCGAAACTCAAACC
CCGGACCAAGCTCAACTGGGACGTTCATGTCGTCTCGCTGGTGCAGAGCA
CCTTCATCAATGGCATGGCCCTTTGGGTCATGTTTGCCGATGAAGACCGG
GCTTCTATGAACGCCTCTGAACGTATCTATGGGTATACTGGAGCCTGTGG
ACTGGTGTCCGCCTTCGCTGCCGGATACTTTGTCTACGATCTGATCGTCA
GCACGATCTACGTTAAGCTCTTTGGGATCGGAATGCTTTTCCATGGCATT
AGCGCCCTGTGGGTGTTCAGTTTTGGATTTAGACCATTCGTGAACTTCTA
CTCCCCCGTCTTCATCCTCTATGAGCTCTCCAGCCCCTTCCTCAATATCC
ACTGGTTCCTCGACAAGGTCAACATGACCGGCAGCAACCTGCAGTGGTAC
AATGGCATGATGCTTCTCTTCACCTTCTTCAGCTGCCGTCTCCTTTGGGG
CACATACCAGTCCGTCGCCGTCTATCGGGACATGTGGTACGCCTTGAAAC
AGACCTGGGATGCCACTGCAGCTGCCACTCCCCTCGAACCCGTCGATCTC
ACCTCTCAAGTCTTCCAGGTCCGCGGAGGCAGCGGCAGTGAAATGGCTAA
GTACGCCTCCTTCACCGCCGGCGGCGTCCCCACCTGGCTGGTCCTGACTT
ACGTGATCTCGAACGTGGTTCTCAACTTCCTGAACTACTTCTGGTTCTCG
AAGATGGTCGAGACCGTCCTGAAGCGGTTCCGCGGGCCCGCCGAGAAGTC
CGGACCGGCCGGTAAGCCCTCTAAGGAGGAGCAAATCAGCCATCTGAAGG
AGGAGATCACGCAGAAGGTCGTCCTGGAAGCGGCCTCCAAGCTGGAACAG
GAGGAAGGTAGCCCTTTCCTCGATGGAGTGTCTGAGGAGAAAGTCGCTTC
GGCTGTCGACTCGGGGCTTACCGAGGAATTGAGGAAGAGGAAAGTCCAGT
TGTCATCCTAGATGTTGGATCCTTTTCCACCCCCGCCAGCATGGCTGCGG
GATTTCGTTGAGCCATGGGCGCTTCATTACAACGTTCCTGCTCTGACGGA
GCATGCTCACGAGGTCATTATTGCTTTTGCCGGCTACCTTTTTATCCACT
TCATCTTATCCCCCGTTCTGTCTCCGGTGCTTTTCCCCAATCACTACCCG
AAACTCAAACCCCGGACCAAGCTCAACTGGGACGTTCATGTCGTCTCGCT
GGTGCAGAGCACCTTCATCAATGGCATGGCCCTTTGGGTCATGTTTGCCG
ATGAAGACCGGGCTTCTATGAACGCCTCTGAACGTATCTATGGGTATACT
GGAGCCTGTGGACTGGTGTCCGCCTTCGCTGCCGGATACTTTGTCTACGA
TCTGATCGTCAGCACGATCTACGTTAAGCTCTTTGGGATCGGAATGCTTT
TCCATGGCATTAGCGCCCTGTGGGTGTTCAGTTTTGGATTTAGACCATTC
GTGAACTTCTACTCCCCCGTCTTCATCCTCTATGAGCTCTCCAGCCCCTT
CCTCAATATCCACTGGTTCCTCGACAAGGTCAACATGACCGGCAGCAACC
TGCAGTGGTACAATGGCATGATGCTTCTCTTCACCTTCTTCAGCTGCCGT
CTCCTTTGGGGCACATACCAGTCCGTCGCCGTCTATCGGGACATGTGGTA
CGCCTTGAAACAGACCTGGGATGCCACTGCAGCTGCCACTCCCCTCGAAC
CCGTCGATCTCACCTCTCAAGTCTTCCAGGTCCGCGGAGGCAGCGGCAGT
GAAATGGCTAAGTACGCCTCCTTCACCGCCGGCGGCGTCCCCACCTGGCT
GGTCCTGACTTACGTGATCTCGAACGTGGTTCTCAACTTCCTGAACTACT
TCTGGTTCTCGAAGATGGTCGAGACCGTCCTGAAGCGGTTCCGCGGGCCC
GCCGAGAAGTCCGGACCGGCCGGTAAGCCCTCTAAGGAGGAGCAAATCAG
CCATCTGAAGGAGGAGATCACGCAGAAGGTCGTCCTGGAAGCGGCCTCCA
AGCTGGAACAGGAGGAAGGTAGCCCTTTCCTCGATGGAGTGTCTGAGGAG
AAAGTCGCTTCGGCTGTCGACTCGGGGCTTACCGAGGAATTGAGGAAGAG
GAAAGTCCAGTTGTCATCCTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011635-T1.utr5p1 | KJC3_011635-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011635-T1.utr3p1 | KJC3_011635-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR006634 |
| DBxref | PFAM:PF03798 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:1193941..1195736 + |
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