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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:1209648..1210790+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011643-T1 ID=KJC3_011643-T1|Name=KJC3_011643-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1143bp|location=Sequence derived from alignment at ch8:1209648..1210790+ (Aspergillus niger KJC3) ATCCGCCCGCTTCCACGGTATCGCATCTACAATATCATATTAATATCCAT
TTCCACCATGTTCACCGGTCTCGTTGAGAAGATTGGGAGTGAGTCTCTAA
TCCTGCGACCATGACCACATAAACAGCAAAACTAATCACTCTCCTCTATC
GCAGCGGTCTCGTCCCTCGAGCCTCTCGATACCTCGTCAAGCGGGGGCGG
GGGTACATCATTGACTATCACGGACTGTGAGGAGATCCTCACAGATTGCC
ATCTCGGCGACAGTATAGCCGTCAATGGTATGAACTGCATTGCATGATAC
CAATTGACACACTCACATTCATTCCCATTGCACTTGATCCCTTTTTCCTC
TGCTCTTCCCTCGCCATCGTTGCCCCTCCCCCTTACCCCCACTCCCCCCC
AAAATCTCGAAACAATAACCCCCACCAAACCCCCCCGAAAAGAGAAATCC
ACCAAGCCAACATAATCGCATCAAACCAGGAACCTGCCTTACAGTAACGG
CCTTCGACAAAACCTGGTTCAAGGTCGGCGTCGCCCCCGAAACCCTCCGC
CGCACAAATCTCGGCTCCCTGCAGACCAACTCCCGCGTGAACCTCGAACG
CGCCGTCCTGGGCGAAACGCGCATGGGCGGTCATTTCGTGCAGGGCCACG
TCGACACCATCGCTAAGATCCTCTCCGTGACGCCGGAGGGCAATGCGCTG
GTGTTCCGTATGCAGCCGCGCGATATCGGCGTGATGCGGTATATCGTGGA
GAAGGGATATGTTACGCTGGACGGGGCTAGTTTGACTGTGACGAATGTTG
TGGATGGCCAGGAGGGATATTTTGAGGTGATGCTTATTGCGTACACGCAG
GAGAAGATTGTCACGGCGGCAAAGAAGCCCGGGGATTATGTGAATGTGGA
GATTGATATTGTGGGCAAATATGTTGAGAAGAGTGTGCAGGGGTATTTTG
CTGGTACTGCGGGTGGGGATATGAAGATGTTGGAGAAGATGGTAGAGAGG
ATCGTGGAGGAGAAGTTGAAAAGGTAGGTCCGTGTTGTAATTACTGCATT
AGTAGGTAGGGAAGAGATGACCATGCATGATGTTTACGAGCATTTAGCTA
TATGTGAAATAGTGATATGAATGAAGAAAATTCTTTTGCTTCC back to topCoding sequence (CDS) from alignment at ch8:1209648..1210790+ >KJC3_011643-T1 ID=KJC3_011643-T1|Name=KJC3_011643-T1|organism=Aspergillus niger KJC3|type=CDS|length=2106bp|location=Sequence derived from alignment at ch8:1209648..1210790+ (Aspergillus niger KJC3) ATGTTCACCGGTCTCGTTGAGAAGATTGGGACGGTCTCGTCCCTCGAGCC TCTCGATACCTCGTCAAGCGGGGGCGGGGGTACATCATTGACTATCACGG ACTGTGAGGAGATCCTCACAGATTGCCATCTCGGCGACAGTATAGCCGTC AATGGAACCTGCCTTACAGTAACGGCCTTCGACAAAACCTGGTTCAAGGT CGGCGTCGCCCCCGAAACCCTCCGCCGCACAAATCTCGGCTCCCTGCAGA CCAACTCCCGCGTGAACCTCGAACGCGCCGTCCTGGGCGAAACGCGCATG GGCGGTCATTTCGTGCAGGGCCACGTCGACACCATCGCTAAGATCCTCTC CGTGACGCCGGAGGGCAATGCGCTGGTGTTCCGTATGCAGCCGCGCGATA TCGGCGTGATGCGGTATATCGTGGAGAAGGGATATGTTACGCTGGACGGG GCTAGTTTGACTGTGACGAATGTTGTGGATGGCCAGGAGGGATATTTTGA GGTGATGCTTATTGCGTACACGCAGGAGAAGATTGTCACGGCGGCAAAGA AGCCCGGGGATTATGTGAATGTGGAGATTGATATTGTGGGCAAATATGTT GAGAAGAGTGTGCAGGGGTATTTTGCTGGTACTGCGGGTGGGGATATGAA GATGTTGGAGAAGATGGTAGAGAGGATCGTGGAGGAGAAGTTGAAAAGGT AGATGTTCACCGGTCTCGTTGAGAAGATTGGGACGGTCTCGTCCCTCGAG CCTCTCGATACCTCGTCAAGCGGGGGCGGGGGTACATCATTGACTATCAC GGACTGTGAGGAGATCCTCACAGATTGCCATCTCGGCGACAGTATAGCCG TCAATGGAACCTGCCTTACAGTAACGGCCTTCGACAAAACCTGGTTCAAG GTCGGCGTCGCCCCCGAAACCCTCCGCCGCACAAATCTCGGCTCCCTGCA GACCAACTCCCGCGTGAACCTCGAACGCGCCGTCCTGGGCGAAACGCGCA TGGGCGGTCATTTCGTGCAGGGCCACGTCGACACCATCGCTAAGATCCTC TCCGTGACGCCGGAGGGCAATGCGCTGGTGTTCCGTATGCAGCCGCGCGA TATCGGCGTGATGCGGTATATCGTGGAGAAGGGATATGTTACGCTGGACG GGGCTAGTTTGACTGTGACGAATGTTGTGGATGGCCAGGAGGGATATTTT GAGGTGATGCTTATTGCGTACACGCAGGAGAAGATTGTCACGGCGGCAAA GAAGCCCGGGGATTATGTGAATGTGGAGATTGATATTGTGGGCAAATATG TTGAGAAGAGTGTGCAGGGGTATTTTGCTGGTACTGCGGGTGGGGATATG AAGATGTTGGAGAAGATGGTAGAGAGGATCGTGGAGGAGAAGTTGAAAAG GTAGATGTTCACCGGTCTCGTTGAGAAGATTGGGACGGTCTCGTCCCTCG AGCCTCTCGATACCTCGTCAAGCGGGGGCGGGGGTACATCATTGACTATC ACGGACTGTGAGGAGATCCTCACAGATTGCCATCTCGGCGACAGTATAGC CGTCAATGGAACCTGCCTTACAGTAACGGCCTTCGACAAAACCTGGTTCA AGGTCGGCGTCGCCCCCGAAACCCTCCGCCGCACAAATCTCGGCTCCCTG CAGACCAACTCCCGCGTGAACCTCGAACGCGCCGTCCTGGGCGAAACGCG CATGGGCGGTCATTTCGTGCAGGGCCACGTCGACACCATCGCTAAGATCC TCTCCGTGACGCCGGAGGGCAATGCGCTGGTGTTCCGTATGCAGCCGCGC GATATCGGCGTGATGCGGTATATCGTGGAGAAGGGATATGTTACGCTGGA CGGGGCTAGTTTGACTGTGACGAATGTTGTGGATGGCCAGGAGGGATATT TTGAGGTGATGCTTATTGCGTACACGCAGGAGAAGATTGTCACGGCGGCA AAGAAGCCCGGGGATTATGTGAATGTGGAGATTGATATTGTGGGCAAATA TGTTGAGAAGAGTGTGCAGGGGTATTTTGCTGGTACTGCGGGTGGGGATA TGAAGATGTTGGAGAAGATGGTAGAGAGGATCGTGGAGGAGAAGTTGAAA AGGTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_011643-T1.utr5p1 | KJC3_011643-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_011643-T1.utr3p1 | KJC3_011643-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
Property Name | Value |
DBxref | InterPro:IPR017938 |
DBxref | InterPro:IPR026017 |
DBxref | InterPro:IPR001783 |
DBxref | InterPro:IPR023366 |
DBxref | PFAM:PF00677 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch8 | supercontig | ch8:1209648..1210790 + |
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