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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:1256082..1259100+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011661-T1 ID=KJC3_011661-T1|Name=KJC3_011661-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3019bp|location=Sequence derived from alignment at ch8:1256082..1259100+ (Aspergillus niger KJC3)
CAGAAGCTCCCTCTCCCACCGCCTCTTTTGCGGACATGTGAAGGTGAGGC
CGAACAGGTTATCGCTGTCACATACATACGTCAGTGGTCAGGCTGGCGCA
TACCTTATCGCTGCAGATGATTCATCTGCTGGCTTGGGTCGTGCTGGCAA
TGGTTCTGTTCAGCTTCCGCCAGGATGCAAGGCTACCGTACCTGTCTAGA
CCACATAGCTCTTGTGTAGCGAAAGTCAACGGATGACTGACCCTCGGAGG
AAATCCCGCATACTGCACTTGCTATTTGCCGTGTAGTAGTAGGGGGTTAG
GGGGGGTGTATCTACACGGGGAAGCCGATAACTGTTCAGCGGGAAACGGC
AACACAAGATGGCTCGCGCGATCACGAATCAGTTCGAAGGAACGAACCGT
CGGCGATCAGCGGAAAGGGACCATGACATCATGGTGCAGGAAGCGCCAAA
CGGACTCCAGCCTCGATGAGGGTCTCCGATTATCTCCATCATTGGTTCGG
CACGTGGCTGGAACAACTCTATATGCCTCAGGCATCAGGGGTATTCTGTG
TAATCACGTGATGCTAAACCGGGGACTCGGAGAAACCTAGTCCCGTCTGG
CTCTAGCGCGAATGGCTGCGGAAAGGAACATCCCCAAGGGCCTCCATTCA
GCTCTGTCGCTCCAGTAAATTCAGGTCGGCGTTCCTTGCCCATCTTACCA
TTCACCCGTCGGTATGGCTAGGAAACTTCGTGCGGCTGCTCAAGCAGCTG
CGCAATCAATGCGTACGTGACTTGCTTGGTTTCCACCTCAACCCTATCCT
TGGCCGCCGCGGCCTCGGTCGTCACGGACGCGAACAACTAATTACCCAGT
AGGGAATGCCGCCCCTCCGCTCCCCGATGCCTCGGACGAGGAGATGATCG
AAGCACCCCCATCGCGTGGATCATCACCAGCGATGGAAGATCCAGGAGAT
GCTTCGGATAAGGATCCTGAGGCGGAAGCCCAGGCAGAACCCAGCCAGGA
GGAAGAGACAGCCGCAACACCCGCCCAGGATTCAAACCCTCCATCGCGCG
GCGACACTCCTTCACGCATGGGTGGCCGCATGTCAGCCATCCCGCGAAAG
CGCCGCATAGGTCGTCCCCCGAAGAACCGTCCCCCAGACTGGGATGCGCC
TGATGACGGCGCCCCTCAGACACCGATCCATACGTCCACGCCGGTCAAGC
GCAGACGTGGTCGTCCCGCTGCTAGTGGTGGAAGGTGGGCACGTAACCGG
GGCCCGTCGCATGTTACCCAGGTTCCGATCGACAAGGAGGGGAACATGAT
GGACGTTATCGACGACGAAGTTGCCCTCCCAGACGACCCCGAGGGCGAGA
CGAAGGTGGACAAGAACGGCAATCTACTGGGCGATCGAGAATATAGGGTC
CGTGTGTTTACGATTCTCAACCGTGGAGATCGCAAATACATGTTGTCTAC
TGAGCCTGCGCGATGCATTGGTTTCAGGGACTCGTACCTTTTCTTCCAGA
AGCACAAACTACTGTATAAAATCATCATCGACGACGAGGCGAAACGCGAC
CTCATTGAACGGGAAATTATCCCCCACTCTTACAAAGGCCGAGCTATCGG
TGTCGTCACCGCTCGGTCTGTCTTCCGCGAATTCGGCGCAAAGATTATTG
TTGGTGGAAAGAAGGTCACCGATGATTACCATACACAGGCTGCGAGGGAG
CGTGGAGATGTCGAAGGCGAACTTGCCGTCCCTGAAGATAAGCTCCCTCC
TCCAGGCGAACCTTACAACAAGAACCAGTACGTAGCCTGGCACGGTGCCA
GTAGTGTCTATCACACCAGCGCCCCGTCGGTGCCTTTGCCCACCGGAAAG
GCGGTGGATTCGAAGAAGCGCAAGGTCACGGTTACTGGCGATAACTGGAT
GCTCGAACATGCTCGAGAGGCGAGGTATGTGATGACAAGCCTGTCTGACA
CTCTAGTGACTAACTTTACATGTAGCAACTTCAACTCGCTCATATCGCTT
GCGCGCCGCGAAAACCTTGAAGGACAGTACGACATCCATACAAACGTCAT
GCAGTACCCCAAGATCATGCAACCGACTCATGCCCGCTGGGAGCGTCTGC
CTCCTCCCGACCCTCGAGTTGCAACCAAATTAGCTCAGGGCATGTCCACG
TTGAGCCTGACGAACGGCACCGGCGAAGCAGAGCCAGCTGCTGCGGACAA
AGAAGCCCACGAACCCAGCGACAGCCAAACCGAACAACACACCACCGAGT
CTTCCCTCTTCTCCTCAGTTCCGGCTGCGCTTTCCCGCCGATTTGCCATT
CATGACATTCAGTTCGAATCTTCGCCGTATTCCAACCTGGGCGTTCCCGG
CCCAGACGGCGATGTGCACGATCTCGGCTCCAACGGCCTCATCAGTGTCG
CCGACTCCGCAAATCCCGAGTTTACGAGCCCCGAAATCCTGGAGGAACTT
CCTCCTGAGTGCAAGGAAGCCCTTATCGAGGCGGCTGCGCAAGAGTGGGA
ATGGAAATCCAAGTGGTGCCACGAAGCGAACGACGGGGCTCGCGCCAAAT
TACTCAAGAGTTACGCTTGGTTTCCATGATGTGCATGCTTTCTTATCCTA
TTTTCCCTCTTACTACCCCCCTTTCAAGCCACTGGAGGGACTTTTAACCA
AGGTCGTTCGCTACCTAATATACCACTTCCCTCGCAGTGGCTTTACCATT
CTTCTTTGCTTCGGGGGCTCACGTATATCTAACTAACCAACTGATTATTT
CCATTTCACTTCGGCAAACACACACTCAAATGGGCGGGGGTTTCATTCCG
GATGGGTTGCGAGATTATTTACCAAAAAACAGGGAGTTTGAGCGTTTCAA
TATCTGGAGTGTCGTTATAAGTGGTTACTTCTTTATTACTTTCTTATTTC
TATTCTCAAATCATATCTTATTCTTAGCCTTTGCCGTATATTCTCTTTTA
TCTCCAAATCTTATCCTCATTGCCATGAGATTATAATTTCAGTTTAGTCT
AAACGGATGGGAAGTAAAG back to topCoding sequence (CDS) from alignment at ch8:1256082..1259100+ >KJC3_011661-T1 ID=KJC3_011661-T1|Name=KJC3_011661-T1|organism=Aspergillus niger KJC3|type=CDS|length=3270bp|location=Sequence derived from alignment at ch8:1256082..1259100+ (Aspergillus niger KJC3)
ATGATCGAAGCACCCCCATCGCGTGGATCATCACCAGCGATGGAAGATCC
AGGAGATGCTTCGGATAAGGATCCTGAGGCGGAAGCCCAGGCAGAACCCA
GCCAGGAGGAAGAGACAGCCGCAACACCCGCCCAGGATTCAAACCCTCCA
TCGCGCGGCGACACTCCTTCACGCATGGGTGGCCGCATGTCAGCCATCCC
GCGAAAGCGCCGCATAGGTCGTCCCCCGAAGAACCGTCCCCCAGACTGGG
ATGCGCCTGATGACGGCGCCCCTCAGACACCGATCCATACGTCCACGCCG
GTCAAGCGCAGACGTGGTCGTCCCGCTGCTAGTGGTGGAAGGTGGGCACG
TAACCGGGGCCCGTCGCATGTTACCCAGGTTCCGATCGACAAGGAGGGGA
ACATGATGGACGTTATCGACGACGAAGTTGCCCTCCCAGACGACCCCGAG
GGCGAGACGAAGGTGGACAAGAACGGCAATCTACTGGGCGATCGAGAATA
TAGGGTCCGTGTGTTTACGATTCTCAACCGTGGAGATCGCAAATACATGT
TGTCTACTGAGCCTGCGCGATGCATTGGTTTCAGGGACTCGTACCTTTTC
TTCCAGAAGCACAAACTACTGTATAAAATCATCATCGACGACGAGGCGAA
ACGCGACCTCATTGAACGGGAAATTATCCCCCACTCTTACAAAGGCCGAG
CTATCGGTGTCGTCACCGCTCGGTCTGTCTTCCGCGAATTCGGCGCAAAG
ATTATTGTTGGTGGAAAGAAGGTCACCGATGATTACCATACACAGGCTGC
GAGGGAGCGTGGAGATGTCGAAGGCGAACTTGCCGTCCCTGAAGATAAGC
TCCCTCCTCCAGGCGAACCTTACAACAAGAACCAGTACGTAGCCTGGCAC
GGTGCCAGTAGTGTCTATCACACCAGCGCCCCGTCGGTGCCTTTGCCCAC
CGGAAAGGCGGTGGATTCGAAGAAGCGCAAGGTCACGGTTACTGGCGATA
ACTGGATGCTCGAACATGCTCGAGAGGCGAGCAACTTCAACTCGCTCATA
TCGCTTGCGCGCCGCGAAAACCTTGAAGGACAGTACGACATCCATACAAA
CGTCATGCAGTACCCCAAGATCATGCAACCGACTCATGCCCGCTGGGAGC
GTCTGCCTCCTCCCGACCCTCGAGTTGCAACCAAATTAGCTCAGGGCATG
TCCACGTTGAGCCTGACGAACGGCACCGGCGAAGCAGAGCCAGCTGCTGC
GGACAAAGAAGCCCACGAACCCAGCGACAGCCAAACCGAACAACACACCA
CCGAGTCTTCCCTCTTCTCCTCAGTTCCGGCTGCGCTTTCCCGCCGATTT
GCCATTCATGACATTCAGTTCGAATCTTCGCCGTATTCCAACCTGGGCGT
TCCCGGCCCAGACGGCGATGTGCACGATCTCGGCTCCAACGGCCTCATCA
GTGTCGCCGACTCCGCAAATCCCGAGTTTACGAGCCCCGAAATCCTGGAG
GAACTTCCTCCTGAGTGCAAGGAAGCCCTTATCGAGGCGGCTGCGCAAGA
GTGGGAATGGAAATCCAAGTGGTGCCACGAAGCGAACGACGGGGCTCGCG
CCAAATTACTCAAGAGTTACGCTTGGTTTCCATGAATGATCGAAGCACCC
CCATCGCGTGGATCATCACCAGCGATGGAAGATCCAGGAGATGCTTCGGA
TAAGGATCCTGAGGCGGAAGCCCAGGCAGAACCCAGCCAGGAGGAAGAGA
CAGCCGCAACACCCGCCCAGGATTCAAACCCTCCATCGCGCGGCGACACT
CCTTCACGCATGGGTGGCCGCATGTCAGCCATCCCGCGAAAGCGCCGCAT
AGGTCGTCCCCCGAAGAACCGTCCCCCAGACTGGGATGCGCCTGATGACG
GCGCCCCTCAGACACCGATCCATACGTCCACGCCGGTCAAGCGCAGACGT
GGTCGTCCCGCTGCTAGTGGTGGAAGGTGGGCACGTAACCGGGGCCCGTC
GCATGTTACCCAGGTTCCGATCGACAAGGAGGGGAACATGATGGACGTTA
TCGACGACGAAGTTGCCCTCCCAGACGACCCCGAGGGCGAGACGAAGGTG
GACAAGAACGGCAATCTACTGGGCGATCGAGAATATAGGGTCCGTGTGTT
TACGATTCTCAACCGTGGAGATCGCAAATACATGTTGTCTACTGAGCCTG
CGCGATGCATTGGTTTCAGGGACTCGTACCTTTTCTTCCAGAAGCACAAA
CTACTGTATAAAATCATCATCGACGACGAGGCGAAACGCGACCTCATTGA
ACGGGAAATTATCCCCCACTCTTACAAAGGCCGAGCTATCGGTGTCGTCA
CCGCTCGGTCTGTCTTCCGCGAATTCGGCGCAAAGATTATTGTTGGTGGA
AAGAAGGTCACCGATGATTACCATACACAGGCTGCGAGGGAGCGTGGAGA
TGTCGAAGGCGAACTTGCCGTCCCTGAAGATAAGCTCCCTCCTCCAGGCG
AACCTTACAACAAGAACCAGTACGTAGCCTGGCACGGTGCCAGTAGTGTC
TATCACACCAGCGCCCCGTCGGTGCCTTTGCCCACCGGAAAGGCGGTGGA
TTCGAAGAAGCGCAAGGTCACGGTTACTGGCGATAACTGGATGCTCGAAC
ATGCTCGAGAGGCGAGCAACTTCAACTCGCTCATATCGCTTGCGCGCCGC
GAAAACCTTGAAGGACAGTACGACATCCATACAAACGTCATGCAGTACCC
CAAGATCATGCAACCGACTCATGCCCGCTGGGAGCGTCTGCCTCCTCCCG
ACCCTCGAGTTGCAACCAAATTAGCTCAGGGCATGTCCACGTTGAGCCTG
ACGAACGGCACCGGCGAAGCAGAGCCAGCTGCTGCGGACAAAGAAGCCCA
CGAACCCAGCGACAGCCAAACCGAACAACACACCACCGAGTCTTCCCTCT
TCTCCTCAGTTCCGGCTGCGCTTTCCCGCCGATTTGCCATTCATGACATT
CAGTTCGAATCTTCGCCGTATTCCAACCTGGGCGTTCCCGGCCCAGACGG
CGATGTGCACGATCTCGGCTCCAACGGCCTCATCAGTGTCGCCGACTCCG
CAAATCCCGAGTTTACGAGCCCCGAAATCCTGGAGGAACTTCCTCCTGAG
TGCAAGGAAGCCCTTATCGAGGCGGCTGCGCAAGAGTGGGAATGGAAATC
CAAGTGGTGCCACGAAGCGAACGACGGGGCTCGCGCCAAATTACTCAAGA
GTTACGCTTGGTTTCCATGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011661-T1.utr5p1 | KJC3_011661-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011661-T1.utr3p1 | KJC3_011661-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013933 |
| DBxref | PFAM:PF08624 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:1256082..1259100 + |
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