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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:1549627..1550445+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011766-T1 ID=KJC3_011766-T1|Name=KJC3_011766-T1|organism=Aspergillus niger KJC3|type=mRNA|length=819bp|location=Sequence derived from alignment at ch8:1549627..1550445+ (Aspergillus niger KJC3)
TTTACATTGGTTTCCTTCCCTGGACGGGGTGTGCTTTTCGGACTTTTGCT
CTAGGTATTGTTGGGAAAGTGCTCTATTTTGCCCTCGGGTCTCCTTCGTC
GCTCTGCAGTGATGGCAACCAGAGTTCTTCCAGCGCGCGGTGGTGATCAA
GGTAAACCCGCTTCTGCTACCGGACTCCCTAACCAAACGTTAGTCTTGAA
TACTGCTTCCCAATTCAAAGTGGGCACCATGGCTGACCCCAATTGCAGTT
TGTATTGTACCAACCTCCCAGACAAGCTGCGCAAGCATGACCTACGGCTA
TCCCTCTATATGCTTTTTTCAACCTACGGCACCGTTCTTGATGTTGTCGC
CATGAAGACCCAAAAGATGCGTGGTCAGGCCCATATTGTTTTTAAGGATG
TTCAAGCTAGCACACAGGCTATGCGGGCTCTTCAGGGGTTTGAGTTTTTC
GGCAAACAAATGGTATGTTTTTGCATAGTGCAGTGCGGTTGTTCCTCGCT
CATTGACTCGGGAATATAGAAAATCGTGTATGCTAAGGGTCCCTCGGACG
TCATTGCCCGGCTGCGCGGAACGTATAATGTGCCCACTACAACATCTGCC
AGTCAAGCCACGGGAGCATCCACAGAGCTCCAAAAATCGATATTTAGCGG
GCCCCCAGGATCGGCGGCTTTGCCGTCGAAGCCCAGCGGAGAAGTTAATG
GAGAACCCCAAGCAGGCCAAGGTGTCAAGCGGCCTCGTGAAGATGAAAGC
GACGAAGAGGAAGCCCCTATGGACGAGGACAGTGATGTGCCAATGGAAGC
TTCATCGGATGAAGATTAA back to topCoding sequence (CDS) from alignment at ch8:1549627..1550445+ >KJC3_011766-T1 ID=KJC3_011766-T1|Name=KJC3_011766-T1|organism=Aspergillus niger KJC3|type=CDS|length=1773bp|location=Sequence derived from alignment at ch8:1549627..1550445+ (Aspergillus niger KJC3)
ATGGCAACCAGAGTTCTTCCAGCGCGCGGTGGTGATCAAGGTAAACCCGC
TTCTGCTACCGGACTCCCTAACCAAACTTTGTATTGTACCAACCTCCCAG
ACAAGCTGCGCAAGCATGACCTACGGCTATCCCTCTATATGCTTTTTTCA
ACCTACGGCACCGTTCTTGATGTTGTCGCCATGAAGACCCAAAAGATGCG
TGGTCAGGCCCATATTGTTTTTAAGGATGTTCAAGCTAGCACACAGGCTA
TGCGGGCTCTTCAGGGGTTTGAGTTTTTCGGCAAACAAATGAAAATCGTG
TATGCTAAGGGTCCCTCGGACGTCATTGCCCGGCTGCGCGGAACGTATAA
TGTGCCCACTACAACATCTGCCAGTCAAGCCACGGGAGCATCCACAGAGC
TCCAAAAATCGATATTTAGCGGGCCCCCAGGATCGGCGGCTTTGCCGTCG
AAGCCCAGCGGAGAAGTTAATGGAGAACCCCAAGCAGGCCAAGGTGTCAA
GCGGCCTCGTGAAGATGAAAGCGACGAAGAGGAAGCCCCTATGGACGAGG
ACAGTGATGTGCCAATGGAAGCTTCATCGGATGAAGATTAAATGGCAACC
AGAGTTCTTCCAGCGCGCGGTGGTGATCAAGGTAAACCCGCTTCTGCTAC
CGGACTCCCTAACCAAACTTTGTATTGTACCAACCTCCCAGACAAGCTGC
GCAAGCATGACCTACGGCTATCCCTCTATATGCTTTTTTCAACCTACGGC
ACCGTTCTTGATGTTGTCGCCATGAAGACCCAAAAGATGCGTGGTCAGGC
CCATATTGTTTTTAAGGATGTTCAAGCTAGCACACAGGCTATGCGGGCTC
TTCAGGGGTTTGAGTTTTTCGGCAAACAAATGAAAATCGTGTATGCTAAG
GGTCCCTCGGACGTCATTGCCCGGCTGCGCGGAACGTATAATGTGCCCAC
TACAACATCTGCCAGTCAAGCCACGGGAGCATCCACAGAGCTCCAAAAAT
CGATATTTAGCGGGCCCCCAGGATCGGCGGCTTTGCCGTCGAAGCCCAGC
GGAGAAGTTAATGGAGAACCCCAAGCAGGCCAAGGTGTCAAGCGGCCTCG
TGAAGATGAAAGCGACGAAGAGGAAGCCCCTATGGACGAGGACAGTGATG
TGCCAATGGAAGCTTCATCGGATGAAGATTAAATGGCAACCAGAGTTCTT
CCAGCGCGCGGTGGTGATCAAGGTAAACCCGCTTCTGCTACCGGACTCCC
TAACCAAACTTTGTATTGTACCAACCTCCCAGACAAGCTGCGCAAGCATG
ACCTACGGCTATCCCTCTATATGCTTTTTTCAACCTACGGCACCGTTCTT
GATGTTGTCGCCATGAAGACCCAAAAGATGCGTGGTCAGGCCCATATTGT
TTTTAAGGATGTTCAAGCTAGCACACAGGCTATGCGGGCTCTTCAGGGGT
TTGAGTTTTTCGGCAAACAAATGAAAATCGTGTATGCTAAGGGTCCCTCG
GACGTCATTGCCCGGCTGCGCGGAACGTATAATGTGCCCACTACAACATC
TGCCAGTCAAGCCACGGGAGCATCCACAGAGCTCCAAAAATCGATATTTA
GCGGGCCCCCAGGATCGGCGGCTTTGCCGTCGAAGCCCAGCGGAGAAGTT
AATGGAGAACCCCAAGCAGGCCAAGGTGTCAAGCGGCCTCGTGAAGATGA
AAGCGACGAAGAGGAAGCCCCTATGGACGAGGACAGTGATGTGCCAATGG
AAGCTTCATCGGATGAAGATTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011766-T1.utr5p1 | KJC3_011766-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR035979 |
| DBxref | InterPro:IPR012677 |
| DBxref | InterPro:IPR000504 |
| DBxref | PFAM:PF00076 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:1549627..1550445 + |
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