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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:1600116..1600572+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011789-T1 ID=KJC3_011789-T1|Name=KJC3_011789-T1|organism=Aspergillus niger KJC3|type=mRNA|length=457bp|location=Sequence derived from alignment at ch8:1600116..1600572+ (Aspergillus niger KJC3) ATGGAGAACGGTGCCTCATCTGATGGCAAGGATCCCTCAGCTTTTCTGGG
TGAAATCATTGGCGCCCCAGTTACTGTTAAATTGAACTCAGGCGTTGTCT
ATAAAGGTGAACGATCATATTCTGCTTTGTTCTACCTACCATTTCTGCCA
GTATCGTATCTTTTTCCCCTGGTACAGGAGAAGGGAACCACTCTTATGGG
GGACAGGAGATAGATACAATCGAAGAACAGGAATATTAAAATGCTAACGA
ACTCTTCAGGGGAACTTCAATCGGTAGATGGCTATATGAATATCGCTCTG
GAGAAATCTGAGGAGTTTGTTAATGGAAAATTGTCCCGCAGTTACGGGGA
TGCCTTCATTCGTGGAAATAATGGTTTGTTATGTCACACCTAAGGAGATG
AACACGTCTAACTATCTCTCTTCGACTCGCATAGTGCTGTATATATCCGC
GCATTGA back to topCoding sequence (CDS) from alignment at ch8:1600116..1600572+ >KJC3_011789-T1 ID=KJC3_011789-T1|Name=KJC3_011789-T1|organism=Aspergillus niger KJC3|type=CDS|length=729bp|location=Sequence derived from alignment at ch8:1600116..1600572+ (Aspergillus niger KJC3) ATGGAGAACGGTGCCTCATCTGATGGCAAGGATCCCTCAGCTTTTCTGGG TGAAATCATTGGCGCCCCAGTTACTGTTAAATTGAACTCAGGCGTTGTCT ATAAAGGGGAACTTCAATCGGTAGATGGCTATATGAATATCGCTCTGGAG AAATCTGAGGAGTTTGTTAATGGAAAATTGTCCCGCAGTTACGGGGATGC CTTCATTCGTGGAAATAATGTGCTGTATATATCCGCGCATTGAATGGAGA ACGGTGCCTCATCTGATGGCAAGGATCCCTCAGCTTTTCTGGGTGAAATC ATTGGCGCCCCAGTTACTGTTAAATTGAACTCAGGCGTTGTCTATAAAGG GGAACTTCAATCGGTAGATGGCTATATGAATATCGCTCTGGAGAAATCTG AGGAGTTTGTTAATGGAAAATTGTCCCGCAGTTACGGGGATGCCTTCATT CGTGGAAATAATGTGCTGTATATATCCGCGCATTGAATGGAGAACGGTGC CTCATCTGATGGCAAGGATCCCTCAGCTTTTCTGGGTGAAATCATTGGCG CCCCAGTTACTGTTAAATTGAACTCAGGCGTTGTCTATAAAGGGGAACTT CAATCGGTAGATGGCTATATGAATATCGCTCTGGAGAAATCTGAGGAGTT TGTTAATGGAAAATTGTCCCGCAGTTACGGGGATGCCTTCATTCGTGGAA ATAATGTGCTGTATATATCCGCGCATTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
Term | Definition |
GO:0005732 | small nucleolar ribonucleoprotein complex |
Vocabulary: Biological Process
Term | Definition |
GO:0000398 | mRNA splicing, via spliceosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
Property Name | Value |
DBxref | InterPro:IPR010920 |
DBxref | InterPro:IPR016487 |
DBxref | InterPro:IPR001163 |
DBxref | PFAM:PF01423 |
Product | U4/U6-U5 snRNP complex subunit lsm6 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch8 | supercontig | ch8:1600116..1600572 + |
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