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KJC3_011789-T1, KJC3_011789-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_011789-T1
Unique NameKJC3_011789-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:1600116..1600572+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_011789-T1 ID=KJC3_011789-T1|Name=KJC3_011789-T1|organism=Aspergillus niger KJC3|type=mRNA|length=457bp|location=Sequence derived from alignment at ch8:1600116..1600572+ (Aspergillus niger KJC3)
ATGGAGAACGGTGCCTCATCTGATGGCAAGGATCCCTCAGCTTTTCTGGG TGAAATCATTGGCGCCCCAGTTACTGTTAAATTGAACTCAGGCGTTGTCT ATAAAGGTGAACGATCATATTCTGCTTTGTTCTACCTACCATTTCTGCCA GTATCGTATCTTTTTCCCCTGGTACAGGAGAAGGGAACCACTCTTATGGG GGACAGGAGATAGATACAATCGAAGAACAGGAATATTAAAATGCTAACGA ACTCTTCAGGGGAACTTCAATCGGTAGATGGCTATATGAATATCGCTCTG GAGAAATCTGAGGAGTTTGTTAATGGAAAATTGTCCCGCAGTTACGGGGA TGCCTTCATTCGTGGAAATAATGGTTTGTTATGTCACACCTAAGGAGATG AACACGTCTAACTATCTCTCTTCGACTCGCATAGTGCTGTATATATCCGC GCATTGA
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Coding sequence (CDS) from alignment at ch8:1600116..1600572+

>KJC3_011789-T1 ID=KJC3_011789-T1|Name=KJC3_011789-T1|organism=Aspergillus niger KJC3|type=CDS|length=729bp|location=Sequence derived from alignment at ch8:1600116..1600572+ (Aspergillus niger KJC3)
ATGGAGAACGGTGCCTCATCTGATGGCAAGGATCCCTCAGCTTTTCTGGG
TGAAATCATTGGCGCCCCAGTTACTGTTAAATTGAACTCAGGCGTTGTCT
ATAAAGGGGAACTTCAATCGGTAGATGGCTATATGAATATCGCTCTGGAG
AAATCTGAGGAGTTTGTTAATGGAAAATTGTCCCGCAGTTACGGGGATGC
CTTCATTCGTGGAAATAATGTGCTGTATATATCCGCGCATTGAATGGAGA
ACGGTGCCTCATCTGATGGCAAGGATCCCTCAGCTTTTCTGGGTGAAATC
ATTGGCGCCCCAGTTACTGTTAAATTGAACTCAGGCGTTGTCTATAAAGG
GGAACTTCAATCGGTAGATGGCTATATGAATATCGCTCTGGAGAAATCTG
AGGAGTTTGTTAATGGAAAATTGTCCCGCAGTTACGGGGATGCCTTCATT
CGTGGAAATAATGTGCTGTATATATCCGCGCATTGAATGGAGAACGGTGC
CTCATCTGATGGCAAGGATCCCTCAGCTTTTCTGGGTGAAATCATTGGCG
CCCCAGTTACTGTTAAATTGAACTCAGGCGTTGTCTATAAAGGGGAACTT
CAATCGGTAGATGGCTATATGAATATCGCTCTGGAGAAATCTGAGGAGTT
TGTTAATGGAAAATTGTCCCGCAGTTACGGGGATGCCTTCATTCGTGGAA
ATAATGTGCTGTATATATCCGCGCATTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005732small nucleolar ribonucleoprotein complex
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LSM6KJC3_011789Aspergillus niger KJC3gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011789-T1.exon1KJC3_011789-T1.exon1Aspergillus niger KJC3exon
KJC3_011789-T1.exon2KJC3_011789-T1.exon2Aspergillus niger KJC3exon
KJC3_011789-T1.exon3KJC3_011789-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011789-T1.cdsKJC3_011789-T1.cdsAspergillus niger KJC3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011789-T1KJC3_011789-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR010920
DBxrefInterPro:IPR016487
DBxrefInterPro:IPR001163
DBxrefPFAM:PF01423
ProductU4/U6-U5 snRNP complex subunit lsm6
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:1600116..1600572 +