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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:1739172..1739948+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011806-T1 ID=KJC3_011806-T1|Name=KJC3_011806-T1|organism=Aspergillus niger KJC3|type=mRNA|length=777bp|location=Sequence derived from alignment at ch8:1739172..1739948+ (Aspergillus niger KJC3)
CCTTGCCAGCCATTTCGCCCAATTCTCTCCTCCCCAATCTGAGCTCCAAT
TCCTGTCTCAGCTCTTATCGGCACCTCCCGAATTATGGCTCTACGACTTC
TTCCCTCCACCATGTCCGCCCCCATGCTCTCGCGACGCCTCCTGCTCACG
GAAACCGTGTCCTCCGCCGCCGCCGTAGGACGGTGGTCTCGTTTCGCTAT
CAATGCCTCCGTCTGGTCTCACAACTGGCTTAAGCCCGCAGCCATCTCCT
TGAACATCCCCGGGATCATGGAGGGCCTTTGGGACTCTGTTCTCCGCGCC
GTCCCCAAGAAGAAGACCTCTCACATGAAGAAGCGTCATCGGCAAATGGC
TGGCAAGGCTCTGAAGGACGTCAAGAGTCTCAGCACATGCTCCGGATGTG
GGCAGGTGAAGCGCTCGCACGTCCTGTGCCCCCATTGCGTTGAAAGTAGG
TGCACATCTCTGCGATCGAGTTTCCCCCCAATATCATTCTTAGCGACTGA
CTGTGTACCGACCTCTAGGTGTCAAGAAGCAATGGAAGCAAACCCAGACG
GCTTAAAGAACGAAAGAGGGAGGAATATACGATGAAAAACGGACAGTCTT
TGGATTTGCATTGGCGGATTTGTATTATTACCTGGTATTCATGAAGTGTA
GGATAAATGCTGCATGGCATTCGGCGTCTGGCACAGCCTGAGGGTTATTT
ATGTTAGTGTTGTTTTTTTTTTTTTTTTTTTTTTTTGCCCCTTCAAAGTT
ATATTGTGACCATATTGTATATGTGTA back to topCoding sequence (CDS) from alignment at ch8:1739172..1739948+ >KJC3_011806-T1 ID=KJC3_011806-T1|Name=KJC3_011806-T1|organism=Aspergillus niger KJC3|type=CDS|length=798bp|location=Sequence derived from alignment at ch8:1739172..1739948+ (Aspergillus niger KJC3)
ATGGCTCTACGACTTCTTCCCTCCACCATGTCCGCCCCCATGCTCTCGCG
ACGCCTCCTGCTCACGGAAACCGTGTCCTCCGCCGCCGCCGTAGGACGGT
GGTCTCGTTTCGCTATCAATGCCTCCGTCTGGTCTCACAACTGGCTTAAG
CCCGCAGCCATCTCCTTGAACATCCCCGGGATCATGGAGGGCCTTTGGGA
CTCTGTTCTCCGCGCCGTCCCCAAGAAGAAGACCTCTCACATGAAGAAGC
GTCATCGGCAAATGGCTGGCAAGGCTCTGAAGGACGTCAAGAGTCTCAGC
ACATGCTCCGGATGTGGGCAGGTGAAGCGCTCGCACGTCCTGTGCCCCCA
TTGCGTTGAAAGTGTCAAGAAGCAATGGAAGCAAACCCAGACGGCTTAAA
TGGCTCTACGACTTCTTCCCTCCACCATGTCCGCCCCCATGCTCTCGCGA
CGCCTCCTGCTCACGGAAACCGTGTCCTCCGCCGCCGCCGTAGGACGGTG
GTCTCGTTTCGCTATCAATGCCTCCGTCTGGTCTCACAACTGGCTTAAGC
CCGCAGCCATCTCCTTGAACATCCCCGGGATCATGGAGGGCCTTTGGGAC
TCTGTTCTCCGCGCCGTCCCCAAGAAGAAGACCTCTCACATGAAGAAGCG
TCATCGGCAAATGGCTGGCAAGGCTCTGAAGGACGTCAAGAGTCTCAGCA
CATGCTCCGGATGTGGGCAGGTGAAGCGCTCGCACGTCCTGTGCCCCCAT
TGCGTTGAAAGTGTCAAGAAGCAATGGAAGCAAACCCAGACGGCTTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0015934 | large ribosomal subunit |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011806-T1.utr5p1 | KJC3_011806-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011806-T1.utr3p1 | KJC3_011806-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR011332 |
| DBxref | InterPro:IPR002677 |
| DBxref | PFAM:PF01783 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:1739172..1739948 + |
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