You are here

Home

KJC3_011858-T1, KJC3_011858-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_011858-T1
Unique NameKJC3_011858-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:1865437..1867441+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_011858-T1 ID=KJC3_011858-T1|Name=KJC3_011858-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2005bp|location=Sequence derived from alignment at ch8:1865437..1867441+ (Aspergillus niger KJC3)
CCTCCGTCGCGGCATCAGAGGCGGAAGATTTAATTAGAATCCCGAACCCC
AGAGTGCCACTCTTTCCCCCCCACGGCCAGGACGAGATCAACCCGAGAGA
CCGCTCGACCTATTTTTCATCATGGCTGAAGCTGATTCCTTCCTTCACCT
CGCTCGCCCTCTGGGCCCCGTGGCAGTGGGGACTGCACCGACAACCGCCC
CTCTGAACGTTGTCATCCAACCTCAGGTACGTGTTTTATGGCTGGATCAG
GCAGCCCTCTTCGACCGGAGCCAGAATGCTAATACTATGGGCTAGGCGCT
CTTCTCGATCCTGGACCACTCCCTTCGTCGCAACGCTGACCAGGAGCGTG
TCATCGGTACTCTGCTGGGAACCAGATCCGAGGATGGAACCGAGGTGGAA
ATCCGCAGCACTTTCGCTGTTGGACACACGGAGACGACAGACCAGGTTGA
GGTGGACATGGAATACCAGAAGCAGATGCTTGCGTTGCACCTGAAGGCCA
ACCCCAAGGAAGTGCTCGTGGGTTGGTACGCCACCTCGTCCGAGCTGAAC
ACCTTTTCCGCTTTGATCCAGAACTTCTACAGCGGCCAGGGTGATGGCAC
ATGGCCTCACCCTGCCGTCCACTTGACCGTGTCCACCAAGGCTGGCAAGG
ATATCGAGACCCGCGCCTACATCTCCGCCCCCGTTGGTGTGACCGCGGAG
AGAGCCGCCGACAGCGCCGCCTTCATCCCCGTCCCTTACGAGATCCGCTA
CGGCGAGGCCGAGAAGAGTGGTCTGGAGGCTATTGCTGCGGCCCGTGATG
CCGAGGAGCGCCGTGCCAACATCTTCACTGATATCGAGGCTCTGGAGCGT
GCGATTGAGGATGTTCTGGGCATGATCGACCGGGTTTCCCGCTACGTTGA
GTCTGTCATTGACGAGGAGGCTCCTGCTTCGACGGCCTTGGGCCAGTACC
TGCTCAACACCTTGGCTCTGGCGCCTAAGGTTGAGCCTGCTGACATTGAG
CGTGACTTGTATGTTGCCCCCCTCCCCTCTTCTTCCCTTACCCCCCTAGT
TATCAGCCCAATATCAAGTACCAAACTAACCGAAATCAACAGCAACAACC
ACATCCAGGACGTCCTGGTCGTGTCCTACCTGGCCAACACCATCCGTACA
CAGATGGAGCTGTCCAACCGGCTAGCAACCGCCCAGCTGACTCTGGGAGG
CGAGTCCGGCAGCGGCGAGTCGGGCGACAAGCGCGGCGGCCAACGGGGCG
GCAAAGGAGGCCGGGGCGGGCAACAGCGGACTCAAGAACGGGGCGGAGAG
GAGGCTCGCGCGTAAGAGGATATCATAGGGTTATTATAACGATACCTTTC
CATTTCTCTTTTTAACATTTATTTCATTTGTGCAAAAATTCTTTTCTTCT
TTCAATTTCCCTCGCCACGCAACAAAAAGCATGTCCCCTTGATATCTTTC
TATTTCCTGGATATATGATATGTTTCCAGTCCATATCCGTTCCTGTGCCA
GCCAAGGAGAACTCGTGTGTGGGTTGAAGCCTGGTTCCGCATCTGGCATG
GCAGGCATCACATCCAACCAATACGCACCCTATCAATGATCACCTGTCTT
TCTCAGGAAAGAAACTGCGCATAATATTGGACGGATAGGATCATACGAAG
AACGAACCAACGAAGCCCAAAATGGAAAGGAGGAAAAGAAATAAGATGAA
AGAATGAAAGAAAAGAGCAACGAACGGCGTATGGGAGTCCGTCTGTCTGG
CTTGAAATGGAAAAAAATGGGAAAAAGAGAGCAGAAGAGATGCTTTAACG
TACACGCGATCAGCCTAGAACCAGAAGCTTGCATTTCGTTATTGTCCTGT
TCTCTTGTATGTGATGTAGGGTAGGGTGACAGTGTCAGGGTGGTTTTTGG
TACATATGCAATGCCTTTGGGGCTAGTTGACTTTCATGTCTATCTATTCT
GTTGATAAACGTTGCAATAGAGTACGAACTAGGGTAGATCATGTCTTATC
GATGG
back to top

Coding sequence (CDS) from alignment at ch8:1865437..1867441+

>KJC3_011858-T1 ID=KJC3_011858-T1|Name=KJC3_011858-T1|organism=Aspergillus niger KJC3|type=CDS|length=3123bp|location=Sequence derived from alignment at ch8:1865437..1867441+ (Aspergillus niger KJC3)
ATGGCTGAAGCTGATTCCTTCCTTCACCTCGCTCGCCCTCTGGGCCCCGT
GGCAGTGGGGACTGCACCGACAACCGCCCCTCTGAACGTTGTCATCCAAC
CTCAGGCGCTCTTCTCGATCCTGGACCACTCCCTTCGTCGCAACGCTGAC
CAGGAGCGTGTCATCGGTACTCTGCTGGGAACCAGATCCGAGGATGGAAC
CGAGGTGGAAATCCGCAGCACTTTCGCTGTTGGACACACGGAGACGACAG
ACCAGGTTGAGGTGGACATGGAATACCAGAAGCAGATGCTTGCGTTGCAC
CTGAAGGCCAACCCCAAGGAAGTGCTCGTGGGTTGGTACGCCACCTCGTC
CGAGCTGAACACCTTTTCCGCTTTGATCCAGAACTTCTACAGCGGCCAGG
GTGATGGCACATGGCCTCACCCTGCCGTCCACTTGACCGTGTCCACCAAG
GCTGGCAAGGATATCGAGACCCGCGCCTACATCTCCGCCCCCGTTGGTGT
GACCGCGGAGAGAGCCGCCGACAGCGCCGCCTTCATCCCCGTCCCTTACG
AGATCCGCTACGGCGAGGCCGAGAAGAGTGGTCTGGAGGCTATTGCTGCG
GCCCGTGATGCCGAGGAGCGCCGTGCCAACATCTTCACTGATATCGAGGC
TCTGGAGCGTGCGATTGAGGATGTTCTGGGCATGATCGACCGGGTTTCCC
GCTACGTTGAGTCTGTCATTGACGAGGAGGCTCCTGCTTCGACGGCCTTG
GGCCAGTACCTGCTCAACACCTTGGCTCTGGCGCCTAAGGTTGAGCCTGC
TGACATTGAGCGTGACTTCAACAACCACATCCAGGACGTCCTGGTCGTGT
CCTACCTGGCCAACACCATCCGTACACAGATGGAGCTGTCCAACCGGCTA
GCAACCGCCCAGCTGACTCTGGGAGGCGAGTCCGGCAGCGGCGAGTCGGG
CGACAAGCGCGGCGGCCAACGGGGCGGCAAAGGAGGCCGGGGCGGGCAAC
AGCGGACTCAAGAACGGGGCGGAGAGGAGGCTCGCGCGTAAATGGCTGAA
GCTGATTCCTTCCTTCACCTCGCTCGCCCTCTGGGCCCCGTGGCAGTGGG
GACTGCACCGACAACCGCCCCTCTGAACGTTGTCATCCAACCTCAGGCGC
TCTTCTCGATCCTGGACCACTCCCTTCGTCGCAACGCTGACCAGGAGCGT
GTCATCGGTACTCTGCTGGGAACCAGATCCGAGGATGGAACCGAGGTGGA
AATCCGCAGCACTTTCGCTGTTGGACACACGGAGACGACAGACCAGGTTG
AGGTGGACATGGAATACCAGAAGCAGATGCTTGCGTTGCACCTGAAGGCC
AACCCCAAGGAAGTGCTCGTGGGTTGGTACGCCACCTCGTCCGAGCTGAA
CACCTTTTCCGCTTTGATCCAGAACTTCTACAGCGGCCAGGGTGATGGCA
CATGGCCTCACCCTGCCGTCCACTTGACCGTGTCCACCAAGGCTGGCAAG
GATATCGAGACCCGCGCCTACATCTCCGCCCCCGTTGGTGTGACCGCGGA
GAGAGCCGCCGACAGCGCCGCCTTCATCCCCGTCCCTTACGAGATCCGCT
ACGGCGAGGCCGAGAAGAGTGGTCTGGAGGCTATTGCTGCGGCCCGTGAT
GCCGAGGAGCGCCGTGCCAACATCTTCACTGATATCGAGGCTCTGGAGCG
TGCGATTGAGGATGTTCTGGGCATGATCGACCGGGTTTCCCGCTACGTTG
AGTCTGTCATTGACGAGGAGGCTCCTGCTTCGACGGCCTTGGGCCAGTAC
CTGCTCAACACCTTGGCTCTGGCGCCTAAGGTTGAGCCTGCTGACATTGA
GCGTGACTTCAACAACCACATCCAGGACGTCCTGGTCGTGTCCTACCTGG
CCAACACCATCCGTACACAGATGGAGCTGTCCAACCGGCTAGCAACCGCC
CAGCTGACTCTGGGAGGCGAGTCCGGCAGCGGCGAGTCGGGCGACAAGCG
CGGCGGCCAACGGGGCGGCAAAGGAGGCCGGGGCGGGCAACAGCGGACTC
AAGAACGGGGCGGAGAGGAGGCTCGCGCGTAAATGGCTGAAGCTGATTCC
TTCCTTCACCTCGCTCGCCCTCTGGGCCCCGTGGCAGTGGGGACTGCACC
GACAACCGCCCCTCTGAACGTTGTCATCCAACCTCAGGCGCTCTTCTCGA
TCCTGGACCACTCCCTTCGTCGCAACGCTGACCAGGAGCGTGTCATCGGT
ACTCTGCTGGGAACCAGATCCGAGGATGGAACCGAGGTGGAAATCCGCAG
CACTTTCGCTGTTGGACACACGGAGACGACAGACCAGGTTGAGGTGGACA
TGGAATACCAGAAGCAGATGCTTGCGTTGCACCTGAAGGCCAACCCCAAG
GAAGTGCTCGTGGGTTGGTACGCCACCTCGTCCGAGCTGAACACCTTTTC
CGCTTTGATCCAGAACTTCTACAGCGGCCAGGGTGATGGCACATGGCCTC
ACCCTGCCGTCCACTTGACCGTGTCCACCAAGGCTGGCAAGGATATCGAG
ACCCGCGCCTACATCTCCGCCCCCGTTGGTGTGACCGCGGAGAGAGCCGC
CGACAGCGCCGCCTTCATCCCCGTCCCTTACGAGATCCGCTACGGCGAGG
CCGAGAAGAGTGGTCTGGAGGCTATTGCTGCGGCCCGTGATGCCGAGGAG
CGCCGTGCCAACATCTTCACTGATATCGAGGCTCTGGAGCGTGCGATTGA
GGATGTTCTGGGCATGATCGACCGGGTTTCCCGCTACGTTGAGTCTGTCA
TTGACGAGGAGGCTCCTGCTTCGACGGCCTTGGGCCAGTACCTGCTCAAC
ACCTTGGCTCTGGCGCCTAAGGTTGAGCCTGCTGACATTGAGCGTGACTT
CAACAACCACATCCAGGACGTCCTGGTCGTGTCCTACCTGGCCAACACCA
TCCGTACACAGATGGAGCTGTCCAACCGGCTAGCAACCGCCCAGCTGACT
CTGGGAGGCGAGTCCGGCAGCGGCGAGTCGGGCGACAAGCGCGGCGGCCA
ACGGGGCGGCAAAGGAGGCCGGGGCGGGCAACAGCGGACTCAAGAACGGG
GCGGAGAGGAGGCTCGCGCGTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005852eukaryotic translation initiation factor 3 complex
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: Molecular Function
TermDefinition
GO:0031369translation initiation factor binding
GO:0003743translation initiation factor activity
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_011858KJC3_011858Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011858-T1KJC3_011858-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011858-T1.utr5p1KJC3_011858-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011858-T1.exon1KJC3_011858-T1.exon1Aspergillus niger KJC3exon
KJC3_011858-T1.exon2KJC3_011858-T1.exon2Aspergillus niger KJC3exon
KJC3_011858-T1.exon3KJC3_011858-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011858-T1.cdsKJC3_011858-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011858-T1.utr3p1KJC3_011858-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
NoteMEROPS:MER0030133
DBxrefInterPro:IPR037518
DBxrefInterPro:IPR027531
DBxrefInterPro:IPR024969
DBxrefInterPro:IPR000555
DBxrefPFAM:PF13012
DBxrefPFAM:PF01398
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:1865437..1867441 +
Powered by Drupal