You are here

Home

KJC3_011921-T1, KJC3_011921-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_011921-T1
Unique NameKJC3_011921-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:2022964..2024301-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_011921-T1 ID=KJC3_011921-T1|Name=KJC3_011921-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1338bp|location=Sequence derived from alignment at ch8:2022964..2024301- (Aspergillus niger KJC3)
GCAATACCAATCGCAACAGACATCAAATATAATACTATACTACCAAGCGA
CAATGACGCCTTCTAAATCAGAGGATACCCCTCCCCCCGCAGCCCATCAT
CATCGACTCTCATACCAACAATTCTCCAAGCGCCTGATCCTCTCTTACAT
ACTCGACTGGACCCTCATTATGTATGTCCTCCATACTCTAGACAAACCCC
AACAAACTAGGCACTACTCACTAATAAAATTTCAGCGGAGTCGCTCTCAT
CGGCTTTGGCTTCTCCCAAACCACCCCCAACCACCGACCCTTCTCCCTCA
CCGACCCAAGCATCTCCTTCCCCCACAGGGAAAAAGATACCGTCTCAACA
GGCGTGCTAGCCGTGGTAGCGATAATAGCTCCAGCTGTGATTATCATCTT
CGTCTCCTTTCTCTTCATCAATCTGAATACTACCACCATTGCCGGCACTA
GTGGTCGAAACGCACGAAAAGAGATACTAAGACGGAAACTGATGGTAAAG
CTCTGGGAATGGAATGCAGGATGGATGGGCTTAGGAGTCGCCCTTGCGGG
AACGTTCATGGCTACGGAGGGACTAAAGGATCTATATGGGAAGCCGAGGC
CGGATATGCTGGCCAGGTGTGACCCGGATATATCTGCGATTAACGAGTAT
GCGGTTTCGGGGTTGGGAAGGAGACTTGCGGGTGCGCCTACGATGGTGAC
GTGGGAGATATGTCGGAATAAGGGGGATGAGACGTTGAAGGTGGATGGGT
TTGCTAGTTTTCCGAGTGGGCATTCTTCGAGTGAGTTTATCTATGTCCAG
GGAGATGAGAGTGGTGGGATGGATCTGACATGGGGACTATCTAGTTTCGT
TCGCGGGATTGATGTATCTCGCTCTTTGGCTAAGTGCTAAATTCTCCATT
GGGTTCCCATTCCTGGCCTATTCGCCGCTCGGCCATGATCTGGGAAGACA
GGACCGTGGAAAGATTCGAAACCAGGGTGCCGCTCCTCCTGTCTATATGC
TCATCATTACACTAGTGCCCATCGCTGTGGCCTTCTTCATATCTGCATCG
CGTTGGTTCGACTATCGTCATCATGGTTTCGATATCATATTCGGATCGGT
CATGGGAATGGTCTTCGCGTATATTGGCTTCCGATTGTATCAGCTTCCCA
TCATTCGTGGTGCGGGCTGGTCGTGGGGAGCTAGAAGTCGCGAACATGCG
TTCTTCATGGGCGTTGGACTCCCCAGCCACGTTTCTACCGACAGCTGGGT
TTCGATGAGCGACAAACGAGATGCCGTAGAGAGCAGCTCGCATAACGTTG
ATCTGGAAAGTGGTCGACAGAGCGCGACTGAGCGATGA
back to top

Coding sequence (CDS) from alignment at ch8:2022964..2024301-

>KJC3_011921-T1 ID=KJC3_011921-T1|Name=KJC3_011921-T1|organism=Aspergillus niger KJC3|type=CDS|length=3474bp|location=Sequence derived from alignment at ch8:2022964..2024301- (Aspergillus niger KJC3)
TTTCGTTCGCGGGATTGATGTATCTCGCTCTTTGGCTAAGTGCTAAATTC
TCCATTGGGTTCCCATTCCTGGCCTATTCGCCGCTCGGCCATGATCTGGG
AAGACAGGACCGTGGAAAGATTCGAAACCAGGGTGCCGCTCCTCCTGTCT
ATATGCTCATCATTACACTAGTGCCCATCGCTGTGGCCTTCTTCATATCT
GCATCGCGTTGGTTCGACTATCGTCATCATGGTTTCGATATCATATTCGG
ATCGGTCATGGGAATGGTCTTCGCGTATATTGGCTTCCGATTGTATCAGC
TTCCCATCATTCGTGGTGCGGGCTGGTCGTGGGGAGCTAGAAGTCGCGAA
CATGCGTTCTTCATGGGCGTTGGACTCCCCAGCCACGTTTCTACCGACAG
CTGGGTTTCGATGAGCGACAAACGAGATGCCGTAGAGAGCAGCTCGCATA
ACGTTGATCTGGAAAGTGGTCGACAGAGCGCGACTGAGCGATGACGGAGT
CGCTCTCATCGGCTTTGGCTTCTCCCAAACCACCCCCAACCACCGACCCT
TCTCCCTCACCGACCCAAGCATCTCCTTCCCCCACAGGGAAAAAGATACC
GTCTCAACAGGCGTGCTAGCCGTGGTAGCGATAATAGCTCCAGCTGTGAT
TATCATCTTCGTCTCCTTTCTCTTCATCAATCTGAATACTACCACCATTG
CCGGCACTAGTGGTCGAAACGCACGAAAAGAGATACTAAGACGGAAACTG
ATGGTAAAGCTCTGGGAATGGAATGCAGGATGGATGGGCTTAGGAGTCGC
CCTTGCGGGAACGTTCATGGCTACGGAGGGACTAAAGGATCTATATGGGA
AGCCGAGGCCGGATATGCTGGCCAGGTGTGACCCGGATATATCTGCGATT
AACGAGTATGCGGTTTCGGGGTTGGGAAGGAGACTTGCGGGTGCGCCTAC
GATGGTGACGTGGGAGATATGTCGGAATAAGGGGGATGAGACGTTGAAGG
TGGATGGGTTTGCTAGTTTTCCGAGTGGGCATTCTTCGAATGACGCCTTC
TAAATCAGAGGATACCCCTCCCCCCGCAGCCCATCATCATCGACTCTCAT
ACCAACAATTCTCCAAGCGCCTGATCCTCTCTTACATACTCGACTGGACC
CTCATTATTTTCGTTCGCGGGATTGATGTATCTCGCTCTTTGGCTAAGTG
CTAAATTCTCCATTGGGTTCCCATTCCTGGCCTATTCGCCGCTCGGCCAT
GATCTGGGAAGACAGGACCGTGGAAAGATTCGAAACCAGGGTGCCGCTCC
TCCTGTCTATATGCTCATCATTACACTAGTGCCCATCGCTGTGGCCTTCT
TCATATCTGCATCGCGTTGGTTCGACTATCGTCATCATGGTTTCGATATC
ATATTCGGATCGGTCATGGGAATGGTCTTCGCGTATATTGGCTTCCGATT
GTATCAGCTTCCCATCATTCGTGGTGCGGGCTGGTCGTGGGGAGCTAGAA
GTCGCGAACATGCGTTCTTCATGGGCGTTGGACTCCCCAGCCACGTTTCT
ACCGACAGCTGGGTTTCGATGAGCGACAAACGAGATGCCGTAGAGAGCAG
CTCGCATAACGTTGATCTGGAAAGTGGTCGACAGAGCGCGACTGAGCGAT
GACGGAGTCGCTCTCATCGGCTTTGGCTTCTCCCAAACCACCCCCAACCA
CCGACCCTTCTCCCTCACCGACCCAAGCATCTCCTTCCCCCACAGGGAAA
AAGATACCGTCTCAACAGGCGTGCTAGCCGTGGTAGCGATAATAGCTCCA
GCTGTGATTATCATCTTCGTCTCCTTTCTCTTCATCAATCTGAATACTAC
CACCATTGCCGGCACTAGTGGTCGAAACGCACGAAAAGAGATACTAAGAC
GGAAACTGATGGTAAAGCTCTGGGAATGGAATGCAGGATGGATGGGCTTA
GGAGTCGCCCTTGCGGGAACGTTCATGGCTACGGAGGGACTAAAGGATCT
ATATGGGAAGCCGAGGCCGGATATGCTGGCCAGGTGTGACCCGGATATAT
CTGCGATTAACGAGTATGCGGTTTCGGGGTTGGGAAGGAGACTTGCGGGT
GCGCCTACGATGGTGACGTGGGAGATATGTCGGAATAAGGGGGATGAGAC
GTTGAAGGTGGATGGGTTTGCTAGTTTTCCGAGTGGGCATTCTTCGAATG
ACGCCTTCTAAATCAGAGGATACCCCTCCCCCCGCAGCCCATCATCATCG
ACTCTCATACCAACAATTCTCCAAGCGCCTGATCCTCTCTTACATACTCG
ACTGGACCCTCATTATTTTCGTTCGCGGGATTGATGTATCTCGCTCTTTG
GCTAAGTGCTAAATTCTCCATTGGGTTCCCATTCCTGGCCTATTCGCCGC
TCGGCCATGATCTGGGAAGACAGGACCGTGGAAAGATTCGAAACCAGGGT
GCCGCTCCTCCTGTCTATATGCTCATCATTACACTAGTGCCCATCGCTGT
GGCCTTCTTCATATCTGCATCGCGTTGGTTCGACTATCGTCATCATGGTT
TCGATATCATATTCGGATCGGTCATGGGAATGGTCTTCGCGTATATTGGC
TTCCGATTGTATCAGCTTCCCATCATTCGTGGTGCGGGCTGGTCGTGGGG
AGCTAGAAGTCGCGAACATGCGTTCTTCATGGGCGTTGGACTCCCCAGCC
ACGTTTCTACCGACAGCTGGGTTTCGATGAGCGACAAACGAGATGCCGTA
GAGAGCAGCTCGCATAACGTTGATCTGGAAAGTGGTCGACAGAGCGCGAC
TGAGCGATGACGGAGTCGCTCTCATCGGCTTTGGCTTCTCCCAAACCACC
CCCAACCACCGACCCTTCTCCCTCACCGACCCAAGCATCTCCTTCCCCCA
CAGGGAAAAAGATACCGTCTCAACAGGCGTGCTAGCCGTGGTAGCGATAA
TAGCTCCAGCTGTGATTATCATCTTCGTCTCCTTTCTCTTCATCAATCTG
AATACTACCACCATTGCCGGCACTAGTGGTCGAAACGCACGAAAAGAGAT
ACTAAGACGGAAACTGATGGTAAAGCTCTGGGAATGGAATGCAGGATGGA
TGGGCTTAGGAGTCGCCCTTGCGGGAACGTTCATGGCTACGGAGGGACTA
AAGGATCTATATGGGAAGCCGAGGCCGGATATGCTGGCCAGGTGTGACCC
GGATATATCTGCGATTAACGAGTATGCGGTTTCGGGGTTGGGAAGGAGAC
TTGCGGGTGCGCCTACGATGGTGACGTGGGAGATATGTCGGAATAAGGGG
GATGAGACGTTGAAGGTGGATGGGTTTGCTAGTTTTCCGAGTGGGCATTC
TTCGAATGACGCCTTCTAAATCAGAGGATACCCCTCCCCCCGCAGCCCAT
CATCATCGACTCTCATACCAACAATTCTCCAAGCGCCTGATCCTCTCTTA
CATACTCGACTGGACCCTCATTAT
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_011921KJC3_011921Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011921-T1KJC3_011921-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011921-T1.cdsKJC3_011921-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011921-T1.exon3KJC3_011921-T1.exon3Aspergillus niger KJC3exon
KJC3_011921-T1.exon2KJC3_011921-T1.exon2Aspergillus niger KJC3exon
KJC3_011921-T1.exon1KJC3_011921-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011921-T1.utr5p1KJC3_011921-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036938
DBxrefInterPro:IPR000326
DBxrefPFAM:PF01569
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:2022964..2024301 -
Powered by Drupal