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KJC3_011990-T1, KJC3_011990-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_011990-T1
Unique NameKJC3_011990-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:2240826..2242461-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_011990-T1 ID=KJC3_011990-T1|Name=KJC3_011990-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1636bp|location=Sequence derived from alignment at ch8:2240826..2242461- (Aspergillus niger KJC3)
AAACGCGCTGCGACAACGGCAATTTGCCACCATAGAATAAAAACCACGGA
TTTCTGGACAATTCTGCCTTATTGATCACGGAAGCCGGGTCGTGTGTTGC
AGTCGATTCAGTGGTGAGATTTGAACCACATCAGGAAACCGCAACTGATC
TAGACGCGTGTGCGCGCGATCAACAGGCTAGATCTATTGCCATCCCCCTA
GACTTCTTTGCAGTATAGCTACAAAAACCACTGGATTCCGACGCTACAGA
AGTCTGAACCCTGTGTGAAAGATGACTGCCGACACCGATACTCAGAATGA
GTACGACGATGGGCTTCCGGGCCCCGGAGCGCCCACGCCACTCTCTTCCC
TGGAGGTGAGCAATTCAAACGGCAAAATAATATATGTGATGACGGGTAGG
TGAAGTGCATGTACTGATGCTCTTCGTAACAGGGTGTCTCGGGCCTGACA
AGTAGGGATATTAAGCTGTTTGTTGATGCTGGATACAACACTGTTGAGTC
GGTTGCATATACGTACGTCTATCCTTTGCCAGTCTGCTTCCGTGCCATCG
CCCCTTTTTCAGTTCTGCTCACAAGCATGTTCTTGATTATGGTACAGGCC
AAAACGTTTGTTGGAACAAATCAAGGGTATTTCGGAACAGAAAGCCACGA
AAGTCCTGGTTGAGGGTGAGTATTGCTCTTGTGGCATTGGAACTCGTTCG
CGAGGATCTTGTCTGACTCAATGAATTTGTAGCTATGAAGCTTGTACCGA
TGGGCTTTACCACCGCGACCGAAATGCATGCGCGACGAAACGAACTTATC
TCAATTACGACAGGCTCGAAACAGTTAGACACCCTTCTTGGAGGTGGCAT
TGAGACAGGCTCTATCACAGAGATCTTTGGAGAATTCAGGACAGGAAAAA
GTCAGATATGTCATACACTCGCTGTGACTTGCCAATTGCCTTTTGATATG
GGCGGAGGAGAAGGAAAATGCCTATACATTGACACAGAAGGTACCTTCCG
ACCAGTGCGTCTGTTGGCGGTTGCACAGCGATACGGGCTGGTGGGAGAGG
AGGTGCTGGATAATGTGGCATACGCTCGTGCGTACAACTCAGACCATCAA
CTTCAGCTACTCAACCAAGCTTCTCAGATGATGTGTGAGACTCGGTTCTC
GCTCCTTGTCGTTGATTCTGCCACTTCTCTGTACCGGACGGACTTCAACG
GCCGTGGTGAATTGTCGTCGAGACAAACACATCTCGCGAAGTTCATGCGT
ACTCTGCAGCGCCTCGCTGATGAGTTTGGTATTGCGGTCGTCATTACGAA
CCAGGTCGTTGCCCAGGTGGATGGTGGCCCGAGTGCAATGTTCAATCCCG
ATCCAAAGAAGCCAATCGGTGGTAACATTATTGCGCATGCAAGTACGACG
CGGCTAAGTTTGAAGAAAGGACGGGGCGAGACTCGGGTCTGTAAGATCTA
CGATAGCCCATGTCTCCCTGAGAGCGATTGTTTGTTCGCTATTAATGAGG
ATGGTATCGGGGACCCGAACCCCAAGGACTTGGAGAATGACTGAAAAGGG
CGCGGATAGACTCTCAGGCTACGAGTTCATGATTATAGTTGTTTTGCTGG
CATGTATAGGCTGCGTAAATAATAATAGCCTCGGAC
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Coding sequence (CDS) from alignment at ch8:2240826..2242461-

>KJC3_011990-T1 ID=KJC3_011990-T1|Name=KJC3_011990-T1|organism=Aspergillus niger KJC3|type=CDS|length=4176bp|location=Sequence derived from alignment at ch8:2240826..2242461- (Aspergillus niger KJC3)
CTATGAAGCTTGTACCGATGGGCTTTACCACCGCGACCGAAATGCATGCG
CGACGAAACGAACTTATCTCAATTACGACAGGCTCGAAACAGTTAGACAC
CCTTCTTGGAGGTGGCATTGAGACAGGCTCTATCACAGAGATCTTTGGAG
AATTCAGGACAGGAAAAAGTCAGATATGTCATACACTCGCTGTGACTTGC
CAATTGCCTTTTGATATGGGCGGAGGAGAAGGAAAATGCCTATACATTGA
CACAGAAGGTACCTTCCGACCAGTGCGTCTGTTGGCGGTTGCACAGCGAT
ACGGGCTGGTGGGAGAGGAGGTGCTGGATAATGTGGCATACGCTCGTGCG
TACAACTCAGACCATCAACTTCAGCTACTCAACCAAGCTTCTCAGATGAT
GTGTGAGACTCGGTTCTCGCTCCTTGTCGTTGATTCTGCCACTTCTCTGT
ACCGGACGGACTTCAACGGCCGTGGTGAATTGTCGTCGAGACAAACACAT
CTCGCGAAGTTCATGCGTACTCTGCAGCGCCTCGCTGATGAGTTTGGTAT
TGCGGTCGTCATTACGAACCAGGTCGTTGCCCAGGTGGATGGTGGCCCGA
GTGCAATGTTCAATCCCGATCCAAAGAAGCCAATCGGTGGTAACATTATT
GCGCATGCAAGTACGACGCGGCTAAGTTTGAAGAAAGGACGGGGCGAGAC
TCGGGTCTGTAAGATCTACGATAGCCCATGTCTCCCTGAGAGCGATTGTT
TGTTCGCTATTAATGAGGATGGTATCGGGGACCCGAACCCCAAGGACTTG
GAGAATGACTGAGCCAAAACGTTTGTTGGAACAAATCAAGGGTATTTCGG
AACAGAAAGCCACGAAAGTCCTGGTTGAGGGGTGTCTCGGGCCTGACAAG
TAGGGATATTAAGCTGTTTGTTGATGCTGGATACAACACTGTTGAGTCGG
TTGCATATACATGACTGCCGACACCGATACTCAGAATGAGTACGACGATG
GGCTTCCGGGCCCCGGAGCGCCCACGCCACTCTCTTCCCTGGAGCTATGA
AGCTTGTACCGATGGGCTTTACCACCGCGACCGAAATGCATGCGCGACGA
AACGAACTTATCTCAATTACGACAGGCTCGAAACAGTTAGACACCCTTCT
TGGAGGTGGCATTGAGACAGGCTCTATCACAGAGATCTTTGGAGAATTCA
GGACAGGAAAAAGTCAGATATGTCATACACTCGCTGTGACTTGCCAATTG
CCTTTTGATATGGGCGGAGGAGAAGGAAAATGCCTATACATTGACACAGA
AGGTACCTTCCGACCAGTGCGTCTGTTGGCGGTTGCACAGCGATACGGGC
TGGTGGGAGAGGAGGTGCTGGATAATGTGGCATACGCTCGTGCGTACAAC
TCAGACCATCAACTTCAGCTACTCAACCAAGCTTCTCAGATGATGTGTGA
GACTCGGTTCTCGCTCCTTGTCGTTGATTCTGCCACTTCTCTGTACCGGA
CGGACTTCAACGGCCGTGGTGAATTGTCGTCGAGACAAACACATCTCGCG
AAGTTCATGCGTACTCTGCAGCGCCTCGCTGATGAGTTTGGTATTGCGGT
CGTCATTACGAACCAGGTCGTTGCCCAGGTGGATGGTGGCCCGAGTGCAA
TGTTCAATCCCGATCCAAAGAAGCCAATCGGTGGTAACATTATTGCGCAT
GCAAGTACGACGCGGCTAAGTTTGAAGAAAGGACGGGGCGAGACTCGGGT
CTGTAAGATCTACGATAGCCCATGTCTCCCTGAGAGCGATTGTTTGTTCG
CTATTAATGAGGATGGTATCGGGGACCCGAACCCCAAGGACTTGGAGAAT
GACTGAGCCAAAACGTTTGTTGGAACAAATCAAGGGTATTTCGGAACAGA
AAGCCACGAAAGTCCTGGTTGAGGGGTGTCTCGGGCCTGACAAGTAGGGA
TATTAAGCTGTTTGTTGATGCTGGATACAACACTGTTGAGTCGGTTGCAT
ATACATGACTGCCGACACCGATACTCAGAATGAGTACGACGATGGGCTTC
CGGGCCCCGGAGCGCCCACGCCACTCTCTTCCCTGGAGCTATGAAGCTTG
TACCGATGGGCTTTACCACCGCGACCGAAATGCATGCGCGACGAAACGAA
CTTATCTCAATTACGACAGGCTCGAAACAGTTAGACACCCTTCTTGGAGG
TGGCATTGAGACAGGCTCTATCACAGAGATCTTTGGAGAATTCAGGACAG
GAAAAAGTCAGATATGTCATACACTCGCTGTGACTTGCCAATTGCCTTTT
GATATGGGCGGAGGAGAAGGAAAATGCCTATACATTGACACAGAAGGTAC
CTTCCGACCAGTGCGTCTGTTGGCGGTTGCACAGCGATACGGGCTGGTGG
GAGAGGAGGTGCTGGATAATGTGGCATACGCTCGTGCGTACAACTCAGAC
CATCAACTTCAGCTACTCAACCAAGCTTCTCAGATGATGTGTGAGACTCG
GTTCTCGCTCCTTGTCGTTGATTCTGCCACTTCTCTGTACCGGACGGACT
TCAACGGCCGTGGTGAATTGTCGTCGAGACAAACACATCTCGCGAAGTTC
ATGCGTACTCTGCAGCGCCTCGCTGATGAGTTTGGTATTGCGGTCGTCAT
TACGAACCAGGTCGTTGCCCAGGTGGATGGTGGCCCGAGTGCAATGTTCA
ATCCCGATCCAAAGAAGCCAATCGGTGGTAACATTATTGCGCATGCAAGT
ACGACGCGGCTAAGTTTGAAGAAAGGACGGGGCGAGACTCGGGTCTGTAA
GATCTACGATAGCCCATGTCTCCCTGAGAGCGATTGTTTGTTCGCTATTA
ATGAGGATGGTATCGGGGACCCGAACCCCAAGGACTTGGAGAATGACTGA
GCCAAAACGTTTGTTGGAACAAATCAAGGGTATTTCGGAACAGAAAGCCA
CGAAAGTCCTGGTTGAGGGGTGTCTCGGGCCTGACAAGTAGGGATATTAA
GCTGTTTGTTGATGCTGGATACAACACTGTTGAGTCGGTTGCATATACAT
GACTGCCGACACCGATACTCAGAATGAGTACGACGATGGGCTTCCGGGCC
CCGGAGCGCCCACGCCACTCTCTTCCCTGGAGCTATGAAGCTTGTACCGA
TGGGCTTTACCACCGCGACCGAAATGCATGCGCGACGAAACGAACTTATC
TCAATTACGACAGGCTCGAAACAGTTAGACACCCTTCTTGGAGGTGGCAT
TGAGACAGGCTCTATCACAGAGATCTTTGGAGAATTCAGGACAGGAAAAA
GTCAGATATGTCATACACTCGCTGTGACTTGCCAATTGCCTTTTGATATG
GGCGGAGGAGAAGGAAAATGCCTATACATTGACACAGAAGGTACCTTCCG
ACCAGTGCGTCTGTTGGCGGTTGCACAGCGATACGGGCTGGTGGGAGAGG
AGGTGCTGGATAATGTGGCATACGCTCGTGCGTACAACTCAGACCATCAA
CTTCAGCTACTCAACCAAGCTTCTCAGATGATGTGTGAGACTCGGTTCTC
GCTCCTTGTCGTTGATTCTGCCACTTCTCTGTACCGGACGGACTTCAACG
GCCGTGGTGAATTGTCGTCGAGACAAACACATCTCGCGAAGTTCATGCGT
ACTCTGCAGCGCCTCGCTGATGAGTTTGGTATTGCGGTCGTCATTACGAA
CCAGGTCGTTGCCCAGGTGGATGGTGGCCCGAGTGCAATGTTCAATCCCG
ATCCAAAGAAGCCAATCGGTGGTAACATTATTGCGCATGCAAGTACGACG
CGGCTAAGTTTGAAGAAAGGACGGGGCGAGACTCGGGTCTGTAAGATCTA
CGATAGCCCATGTCTCCCTGAGAGCGATTGTTTGTTCGCTATTAATGAGG
ATGGTATCGGGGACCCGAACCCCAAGGACTTGGAGAATGACTGAGCCAAA
ACGTTTGTTGGAACAAATCAAGGGTATTTCGGAACAGAAAGCCACGAAAG
TCCTGGTTGAGGGGTGTCTCGGGCCTGACAAGTAGGGATATTAAGCTGTT
TGTTGATGCTGGATACAACACTGTTGAGTCGGTTGCATATACATGACTGC
CGACACCGATACTCAGAATGAGTACGACGATGGGCTTCCGGGCCCCGGAG
CGCCCACGCCACTCTCTTCCCTGGAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003677DNA binding
GO:0005524ATP binding
GO:0008094DNA-dependent ATPase activity
GO:0003690double-stranded DNA binding
GO:0000150recombinase activity
GO:0003697single-stranded DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006259DNA metabolic process
GO:0000724double-strand break repair via homologous recombination
GO:1990426mitotic recombination-dependent replication fork processing
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RHP51KJC3_011990Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011990-T1KJC3_011990-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011990-T1.cdsKJC3_011990-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011990-T1.utr3p1KJC3_011990-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011990-T1.exon4KJC3_011990-T1.exon4Aspergillus niger KJC3exon
KJC3_011990-T1.exon3KJC3_011990-T1.exon3Aspergillus niger KJC3exon
KJC3_011990-T1.exon2KJC3_011990-T1.exon2Aspergillus niger KJC3exon
KJC3_011990-T1.exon1KJC3_011990-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011990-T1.utr5p1KJC3_011990-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteantiSMASH:Cluster_8.3
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR010995
DBxrefInterPro:IPR033925
DBxrefInterPro:IPR020588
DBxrefInterPro:IPR020587
DBxrefInterPro:IPR011941
DBxrefInterPro:IPR013632
DBxrefInterPro:IPR016467
DBxrefInterPro:IPR003593
DBxrefPFAM:PF00154
DBxrefPFAM:PF08423
DBxrefPFAM:PF14520
DBxrefPFAM:PF13481
ProductRecA recombinase Rhp51
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:2240826..2242461 -
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