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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:2324101..2325899+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012016-T1 ID=KJC3_012016-T1|Name=KJC3_012016-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1799bp|location=Sequence derived from alignment at ch8:2324101..2325899+ (Aspergillus niger KJC3)
CATGCATCGGCGGCGGATTTTGATTTGCCAACCGAAAGATCACCCCTCTA
TTGTGCTGTCAGCCAATCGGCGTCTCTTTCATTAGACGACGGGCCTTCGG
ACTTTCTTCAATTTCAATCTGCCTGCAAATTCGGGGTTGAATTACTCTGC
GAACTACCGAAAGCTCTTCCCTCTTCCCACCTTTACTCCATCCCCATCTG
ATTCAGTTCACCCTTCGGATTCCGGCTCGCTTACGGGAGAATTGCGTGAA
TTTCCTTGGGTTTTCTGCAACTCCGAACCTAGTAGCAACTAGCCCCTCCC
CTCCTTGTCAGCAATCGACCCCGCGCCGTACCTACTCTACCTTTCCTCCA
CCACCACCAGCGTTAGCACCCACCAACCCAAAGTGACGCCGTCAGCATGT
CCAAATACGGCGTCCTAGTAATGGGCCCCGCCGGTGCGGGCAAAACCACC
TTCTGCAGCTCCATCATCCAACATCTTCAAAACACGCGCCGCAGTTGTTT
CTACGTGAACCTAGACCCCGCGGCCGAAACCTTCAACTACGAGCCGGACC
TCGACATCCGCGAGCTCATCACCCTCGAAGATGTGATGGAAGAGCTGGGG
CTAGGTCCCAACGGCGGGCTCATCTACTGCTTCGAGTTCCTCCTTCAGAA
CCTCGAATTCCTCTCTGAAGCCCTCGATCCCCTCAGCGAAGAATACCTCA
TCATCTTCGACATGCCAGGCCAGATCGAGCTCTACACACACATCCCGCTG
CTCCCTTCCCTGGTGCAGTTCCTATCCCGGCAGGGCCCGCTAAACATCAG
TCTCTGCGCGGCGTATCTGCTCGAGAGCACGTTCGTCGTGGACAAGGCCA
AGTTCTTTGCCGGCACACTGAGTGCCATGTCGGCCATGTTGATGCTGGAG
ATGCCGCACGTCAATATCCTGAGCAAGATGGACCAGGTCAAGGATATGGT
CTCGCGCAAGGAACTGAAGCAGTTTACTAACGTGGATGTGAATAATCTGC
TGGGCACGGCGGGTGACGAGGAAACATCCTCAGTGGCCACTGGAGACCCA
TCGTCCAAGGACACAATGCTGAGCGGAGGATCTTTCCAGCAATTAAACCG
CGCGGTCGGCCAACTCATCGATGATTTCAGCATGGTCTCGTTCCTCAAGC
TGGACGTGCAGGATGAGGATAGTGTTGCCGCGGTGCTGAGCCATATTGAC
GATGCTATTCAGTACCATGAGGCTCAGGAACCCCGCGAGCCTTCCGATGC
CCAGGAGGTCGATTACGAAGACTGAGCTGAGTGAGATGCTGTAAGCCGTT
GTTGGCGCTGCCGCTGCCGCCGGCGCGCGCCGTGATTACGCCATCGCATC
AGGATTCTGGGGGCGCATGCGCTAGCGCATCCTACTTTACTACCCCATCG
AGTTATATAGAGCTGTTGCTGTTGTTACTTACTAGGTAACTTGTGCGTAC
CTGGCTGCTGTTACACCCGCTGCCTTGCTGAGTCACCAGCAACAACAACA
ACAACAATACCGACCAACCCGCCCGTCGCTGTTCTGCCATAAGCATCTAC
CCACCTGGTATGGGGGCCAAAATAATGGCGGCTAGATGCAGTGCTCGTAT
CCGGATACGGTTTAAAAACCGACGGGAATTACTTAATTGTCCGACCGACC
GACCGACCGACCTGAAACAGGAATGTGAGCTGAAGGAAGGAAAAGCCAAG
TACTTACTCAGTATCTACTTGACTCCTTACTACATAGTATCTATAATTAA
GATGTCTCTAAAGCCGAACCAATGATAATGTCATATCATAATAGCCAAG back to topCoding sequence (CDS) from alignment at ch8:2324101..2325899+ >KJC3_012016-T1 ID=KJC3_012016-T1|Name=KJC3_012016-T1|organism=Aspergillus niger KJC3|type=CDS|length=879bp|location=Sequence derived from alignment at ch8:2324101..2325899+ (Aspergillus niger KJC3)
ATGTCCAAATACGGCGTCCTAGTAATGGGCCCCGCCGGTGCGGGCAAAAC
CACCTTCTGCAGCTCCATCATCCAACATCTTCAAAACACGCGCCGCAGTT
GTTTCTACGTGAACCTAGACCCCGCGGCCGAAACCTTCAACTACGAGCCG
GACCTCGACATCCGCGAGCTCATCACCCTCGAAGATGTGATGGAAGAGCT
GGGGCTAGGTCCCAACGGCGGGCTCATCTACTGCTTCGAGTTCCTCCTTC
AGAACCTCGAATTCCTCTCTGAAGCCCTCGATCCCCTCAGCGAAGAATAC
CTCATCATCTTCGACATGCCAGGCCAGATCGAGCTCTACACACACATCCC
GCTGCTCCCTTCCCTGGTGCAGTTCCTATCCCGGCAGGGCCCGCTAAACA
TCAGTCTCTGCGCGGCGTATCTGCTCGAGAGCACGTTCGTCGTGGACAAG
GCCAAGTTCTTTGCCGGCACACTGAGTGCCATGTCGGCCATGTTGATGCT
GGAGATGCCGCACGTCAATATCCTGAGCAAGATGGACCAGGTCAAGGATA
TGGTCTCGCGCAAGGAACTGAAGCAGTTTACTAACGTGGATGTGAATAAT
CTGCTGGGCACGGCGGGTGACGAGGAAACATCCTCAGTGGCCACTGGAGA
CCCATCGTCCAAGGACACAATGCTGAGCGGAGGATCTTTCCAGCAATTAA
ACCGCGCGGTCGGCCAACTCATCGATGATTTCAGCATGGTCTCGTTCCTC
AAGCTGGACGTGCAGGATGAGGATAGTGTTGCCGCGGTGCTGAGCCATAT
TGACGATGCTATTCAGTACCATGAGGCTCAGGAACCCCGCGAGCCTTCCG
ATGCCCAGGAGGTCGATTACGAAGACTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012016-T1.utr5p1 | KJC3_012016-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012016-T1.utr3p1 | KJC3_012016-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR004130 |
| DBxref | PFAM:PF03029 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:2324101..2325899 + |
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