You are here

Home

KJC3_012031-T2, KJC3_012031-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012031-T2
Unique NameKJC3_012031-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:2367059..2369085-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012031-T2 ID=KJC3_012031-T2|Name=KJC3_012031-T2|organism=Aspergillus niger KJC3|type=mRNA|length=2027bp|location=Sequence derived from alignment at ch8:2367059..2369085- (Aspergillus niger KJC3)
CAATTATGATCTCCCCCTCAAAGTGTTGGCGAGAGATCCAACTGACAGGC
TCTCATCCTTCGCTTCTTACTATGCAAATCCACTGAAAGGTCAAGCTCAC
TATTCCACCAGTGGAGAAGGTACTACTGCAAGTATGCACTGTAGATATGA
ACAGCCCTCTGAAGCGTGTCCCTACACATAGCCAGCCAACATGAGAAGAC
AAAGAGCATTCACCCATCGATCCAAGAATGGATGCCGCACCTGTCGGTCA
GTCTTTAATCCTTCCATTTCCTACTTCTCCGCTTCCGCTCATCAACATCA
AGACTAGGCTCCTGATCCTAGGGTAAGCAGCTAATCCCCCATGTCCGTGC
ACGCAGGTCCCGCCATATCAAATGTGATGAAACCCCAAATGCATGCCGCA
ACTGCACCTCCACTGGGCGCAAATGTGACGGGTACACCCAATATCGATTA
CCCTTTCGTAAGGCGACACTACCAGTCTCCAAACCATCCAGGAGCCTCAT
CGTCTGTCTGCCCGGACTAGATTCCGATGAGCGTCGATGTCTGCAGTTCT
TCGAGCACAACACCATCCCCATGCTAGTGGGGTATGCCGACTCGGAAGTA
TGGCAGCGTCTCGTGCTACAAATGTGTCACAGAGAACCCGCCGTCTGCCA
CGCAGTAGTCGCGCTCAGCGCCTTTCACGAAAACTACGAGCGGAGCAGCA
TGAACATGGAACCAAAACCCGATCACCGCCACCACCACTACGCCCTGGAA
CAATACAACCGTTCCATGGCGATGCTGCGCCGGCGCATCCAGTCCAACGA
CCCCCAAGTCCGCAGCATCACACTCATGTGCTGCGTCGTGTTCGTAATCC
TTGAACTCCTCGAGGGGGACTACACCAATGCCTTCGCCCATCTACACCAA
GGCCTCAACATCCTGAAAACCCAATCAACTCACCACGCACTAACCACCGA
GCGTATCCTCGCCAAAGCATTCCTTCAACTCAACACCCCCCGAGCCTACT
GGAACGGCCCCGACGTCGTCGTAACCGGCCACCCTCCCAAGGGGAGCGTA
TCCGAAGTAGCCTACTCAAAAACACCAATCCACAGCATCGCCGAAGCAAA
AGAGCGTCTACGAGTCCTAATGAACAACATCTTCCACCTCCAATCCCTCT
GCAACCTCTTCTTCCGCGGCGAACCAGAAGACCCAACCTCCACCACCCCT
CTAACCCTCTCCGCCAAACAAACCACCCTCCACCACGACCTAACAGACTT
CGCCCTGGACCTCAAATCATTCATCTCCTCCCATAAATCCAACACTGCCT
GGACGTTACGAGAAACCCGCAGCGTGGACGTCATCCTCACACACGTAGCA
ACCCTAACCAGCATGCTGGGCTGTTCCCTCGACACAACGGAACTAGGCTA
CGACGACTTCCTACCCGAATTCAAGCGCATCAACGAACTCTGCGAGCGAA
TCACCACCAGCTTCGTGACCGAGTACGGGAGTTACGAGAACCTCCCCACC
ATGGTCACTGACGTCGGGGTCTTGCCGTCGCTGTTCTGGTGCTGTGTGAG
GTGTCGGGATGCAGAGACGAGAGAGCGAGCGCTTCAGTTGCTGAAGATGT
GGCCGCATCGAGAGGGGTTTTATGACTCGTATTTGATTCTGGGGATTTGT
CGGGGGCTGATGGATATTGAGGAGGAGGGGAGGGATGGCGAGGGGTTTAT
TCCGAGGGAGGCTCGTGTGCATACGCACACGGTTGAGGTTGCGGAGGATC
GGAGGAGTATGGTTATTAGGTATGTGTTGGCTGGTGCTGGTGGTGGCGAG
CAGGAGAGGGTGGTGGTGCTGGAGTAAGTACCTTTGTTGTGCGATTTGTT
CCAGGGAAGGGATATTTCATCGATGGTAATGTGTATATATGGAGAGATCG
TATATACAACCATGCAGATATAATAGTATTACTCTATTAGTGAACGGAAA
AGAGAATGAAGGAGGACAGGCAGCTCTCCTGGGAAAGGTTTCGGGAATGA
TGTCTATTTGTACCTCCTATTAACATA
back to top

Coding sequence (CDS) from alignment at ch8:2367059..2369085-

>KJC3_012031-T2 ID=KJC3_012031-T2|Name=KJC3_012031-T2|organism=Aspergillus niger KJC3|type=CDS|length=3054bp|location=Sequence derived from alignment at ch8:2367059..2369085- (Aspergillus niger KJC3)
GTCCCGCCATATCAAATGTGATGAAACCCCAAATGCATGCCGCAACTGCA
CCTCCACTGGGCGCAAATGTGACGGGTACACCCAATATCGATTACCCTTT
CGTAAGGCGACACTACCAGTCTCCAAACCATCCAGGAGCCTCATCGTCTG
TCTGCCCGGACTAGATTCCGATGAGCGTCGATGTCTGCAGTTCTTCGAGC
ACAACACCATCCCCATGCTAGTGGGGTATGCCGACTCGGAAGTATGGCAG
CGTCTCGTGCTACAAATGTGTCACAGAGAACCCGCCGTCTGCCACGCAGT
AGTCGCGCTCAGCGCCTTTCACGAAAACTACGAGCGGAGCAGCATGAACA
TGGAACCAAAACCCGATCACCGCCACCACCACTACGCCCTGGAACAATAC
AACCGTTCCATGGCGATGCTGCGCCGGCGCATCCAGTCCAACGACCCCCA
AGTCCGCAGCATCACACTCATGTGCTGCGTCGTGTTCGTAATCCTTGAAC
TCCTCGAGGGGGACTACACCAATGCCTTCGCCCATCTACACCAAGGCCTC
AACATCCTGAAAACCCAATCAACTCACCACGCACTAACCACCGAGCGTAT
CCTCGCCAAAGCATTCCTTCAACTCAACACCCCCCGAGCCTACTGGAACG
GCCCCGACGTCGTCGTAACCGGCCACCCTCCCAAGGGGAGCGTATCCGAA
GTAGCCTACTCAAAAACACCAATCCACAGCATCGCCGAAGCAAAAGAGCG
TCTACGAGTCCTAATGAACAACATCTTCCACCTCCAATCCCTCTGCAACC
TCTTCTTCCGCGGCGAACCAGAAGACCCAACCTCCACCACCCCTCTAACC
CTCTCCGCCAAACAAACCACCCTCCACCACGACCTAACAGACTTCGCCCT
GGACCTCAAATCATTCATCTCCTCCCATAAATCCAACACTGCCTGGACGT
TACGAGAAACCCGCAGCGTGGACGTCATCCTCACACACGTAGCAACCCTA
ACCAGCATGCTGGGCTGTTCCCTCGACACAACGGAACTAGGCTACGACGA
CTTCCTACCCGAATTCAAGCGCATCAACGAACTCTGCGAGCGAATCACCA
CCAGCTTCGTGACCGAGTACGGGAGTTACGAGAACCTCCCCACCATGGTC
ACTGACGTCGGGGTCTTGCCGTCGCTGTTCTGGTGCTGTGTGAGGTGTCG
GGATGCAGAGACGAGAGAGCGAGCGCTTCAGTTGCTGAAGATGTGGCCGC
ATCGAGAGGGGTTTTATGACTCGTATTTGATTCTGGGGATTTGTCGGGGG
CTGATGGATATTGAGGAGGAGGGGAGGGATGGCGAGGGGTTTATTCCGAG
GGAGGCTCGTGTGCATACGCACACGGTTGAGGTTGCGGAGGATCGGAGGA
GTATGGTTATTAGGTATGTGTTGGCTGGTGCTGGTGGTGGCGAGCAGGAG
AGGGTGGTGGTGCTGGAGTAAATGAGAAGACAAAGAGCATTCACCCATCG
ATCCAAGAATGGATGCCGCACCTGTCGGTCCCGCCATATCAAATGTGATG
AAACCCCAAATGCATGCCGCAACTGCACCTCCACTGGGCGCAAATGTGAC
GGGTACACCCAATATCGATTACCCTTTCGTAAGGCGACACTACCAGTCTC
CAAACCATCCAGGAGCCTCATCGTCTGTCTGCCCGGACTAGATTCCGATG
AGCGTCGATGTCTGCAGTTCTTCGAGCACAACACCATCCCCATGCTAGTG
GGGTATGCCGACTCGGAAGTATGGCAGCGTCTCGTGCTACAAATGTGTCA
CAGAGAACCCGCCGTCTGCCACGCAGTAGTCGCGCTCAGCGCCTTTCACG
AAAACTACGAGCGGAGCAGCATGAACATGGAACCAAAACCCGATCACCGC
CACCACCACTACGCCCTGGAACAATACAACCGTTCCATGGCGATGCTGCG
CCGGCGCATCCAGTCCAACGACCCCCAAGTCCGCAGCATCACACTCATGT
GCTGCGTCGTGTTCGTAATCCTTGAACTCCTCGAGGGGGACTACACCAAT
GCCTTCGCCCATCTACACCAAGGCCTCAACATCCTGAAAACCCAATCAAC
TCACCACGCACTAACCACCGAGCGTATCCTCGCCAAAGCATTCCTTCAAC
TCAACACCCCCCGAGCCTACTGGAACGGCCCCGACGTCGTCGTAACCGGC
CACCCTCCCAAGGGGAGCGTATCCGAAGTAGCCTACTCAAAAACACCAAT
CCACAGCATCGCCGAAGCAAAAGAGCGTCTACGAGTCCTAATGAACAACA
TCTTCCACCTCCAATCCCTCTGCAACCTCTTCTTCCGCGGCGAACCAGAA
GACCCAACCTCCACCACCCCTCTAACCCTCTCCGCCAAACAAACCACCCT
CCACCACGACCTAACAGACTTCGCCCTGGACCTCAAATCATTCATCTCCT
CCCATAAATCCAACACTGCCTGGACGTTACGAGAAACCCGCAGCGTGGAC
GTCATCCTCACACACGTAGCAACCCTAACCAGCATGCTGGGCTGTTCCCT
CGACACAACGGAACTAGGCTACGACGACTTCCTACCCGAATTCAAGCGCA
TCAACGAACTCTGCGAGCGAATCACCACCAGCTTCGTGACCGAGTACGGG
AGTTACGAGAACCTCCCCACCATGGTCACTGACGTCGGGGTCTTGCCGTC
GCTGTTCTGGTGCTGTGTGAGGTGTCGGGATGCAGAGACGAGAGAGCGAG
CGCTTCAGTTGCTGAAGATGTGGCCGCATCGAGAGGGGTTTTATGACTCG
TATTTGATTCTGGGGATTTGTCGGGGGCTGATGGATATTGAGGAGGAGGG
GAGGGATGGCGAGGGGTTTATTCCGAGGGAGGCTCGTGTGCATACGCACA
CGGTTGAGGTTGCGGAGGATCGGAGGAGTATGGTTATTAGGTATGTGTTG
GCTGGTGCTGGTGGTGGCGAGCAGGAGAGGGTGGTGGTGCTGGAGTAAAT
GAGAAGACAAAGAGCATTCACCCATCGATCCAAGAATGGATGCCGCACCT
GTCG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0042025host cell nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_012031KJC3_012031Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012031-T2KJC3_012031-T2-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012031-T2.cdsKJC3_012031-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012031-T2.utr3p1KJC3_012031-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012031-T2.exon3KJC3_012031-T2.exon3Aspergillus niger KJC3exon
KJC3_012031-T2.exon2KJC3_012031-T2.exon2Aspergillus niger KJC3exon
KJC3_012031-T2.exon1KJC3_012031-T2.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012031-T2.utr5p2KJC3_012031-T2.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_012031-T2.utr5p1KJC3_012031-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036864
DBxrefInterPro:IPR021858
DBxrefInterPro:IPR001138
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:2367059..2369085 -
Powered by Drupal