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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:2484900..2486444+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012071-T1 ID=KJC3_012071-T1|Name=KJC3_012071-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1545bp|location=Sequence derived from alignment at ch8:2484900..2486444+ (Aspergillus niger KJC3)
ACCACCCGCCGTCGACAACCACCACCCTCCCCCTACATTCTTTTCAGACC
ACCTTCGTCCCCAGCAGCCAATATGTCGGACTCTACTGTTGGCCAGACGA
AGCAGTTTGGAAAGGGCCAGAGGACCGTCCCTCACCCGGCCCAGAAGGCC
CAGAAATGGTACCCCGTTGATGACGAGTCGCAGCCCAAGAAAGTCAGTAC
CACACCCCGTGCAAGAGCCAGAAAATGAGGTGGAAACGGATGCGGTTTCG
TTATGAACAAATGCGACGGGTTTGCGCTGGTCATTGGGAAAGATTGAACC
TCCTGTATAAAAAAGCTGGAGGTTTGGGGGAAATTCAAAGATTCAGGGCC
AGTGCTCTATACCGCATGAGTTGATAAGGAAATCGCATCTTGGAGAAATT
GGGGCCCCGGAATTCGAAATGGACAAGAAGGAATTGGAACAGGCATTCTG
ACATGGTTATTTTATATACATATAGGTCCGCAAGGCTATCCGTCCCGCTA
AGGTCCGCGAGAGCCTCCAGCCCGGTACCGTTCTGATCCTCCTCGCCGGC
CGCTTCCGTGGAAAGCGTGTCGTTCTCCTCAAGCACCTCGAGCAGGGTGT
TCTCCTCGTCACCGGTCCCTTCAAGATCAACGGTGTTCCCCTCCGCCGTG
TCAACGCTCGTTACGTGATCGCCACCAGCACCCGTATCGACATCAGCGGT
GTTGACGCCCAGACCATCGAGAAGGTCTCCGCTGCCGACTACTTCACCAA
GGAGAAGAAGGCTGAGAAGAAGACCGAGGAGGCTTTCTTCAAGCAGGGAG
AGAAGCCCCAGGTATGTGCACATACACACCCGTGGTTGGGCTCTTCCTTC
GAGAAGAGTCCGACTTTTGCGGAAGTGGCCGGATGATACTGATGTAGCGT
TTTTTCTCCATCAACAGAAGAAGGTTGTTGCCAGCGCCCGCGCTAGCGAC
CAGAAGGCCGTTGACCAGTCCATCCTCGCCTCCGTCAAGAAGGAGGCTTT
CCTCGGAAGCTACCTGGCCAGCACCTTCAGCCTCCGCAACGGCGACAAGC
CCCACGAGATGAAGTGGTAGATGTGTGACGCGGCGGCCGCGGGTTCGGTA
GTTATTGTGGAGGAGTCCTGCGAGGGGCGGCGGCTAGAACCCCCTTTCAA
TCTTTTGCAAGCAACTGGTCGAACTCCACAACCGGCACTTGCGAAAGGAA
AGGGGGGTCGCAGGAGGAAACAGCTCATGAAGTATATGTAACTCGATTCG
AGCCTCATGTTTGCTTAGGATTGCGGTTTTTTTAATGCCGAGGTTAAAAA
AGGAAAGGAAAAACCGGTTGTTATTTCATACTTGATCTCCCTCAAAACTG
AACTGTCTTCCTCCAGCAATTCTGGCCGTTTCACACCCCCTTCTTGCAGT
CGATAACTTTGAGCCGAAATGAAAAAGAAAAAAAGAAGAATACCATTTCC
AGCTGTTCAATTTTATGTTACTACACTCTGTTCACTACGACTATTCCAAT
TTCTTTCAATATCAGGTTCGGGCGGAAAATATCAAAAGAATTGGG back to topCoding sequence (CDS) from alignment at ch8:2484900..2486444+ >KJC3_012071-T1 ID=KJC3_012071-T1|Name=KJC3_012071-T1|organism=Aspergillus niger KJC3|type=CDS|length=1827bp|location=Sequence derived from alignment at ch8:2484900..2486444+ (Aspergillus niger KJC3)
ATGTCGGACTCTACTGTTGGCCAGACGAAGCAGTTTGGAAAGGGCCAGAG
GACCGTCCCTCACCCGGCCCAGAAGGCCCAGAAATGGTACCCCGTTGATG
ACGAGTCGCAGCCCAAGAAAGTCCGCAAGGCTATCCGTCCCGCTAAGGTC
CGCGAGAGCCTCCAGCCCGGTACCGTTCTGATCCTCCTCGCCGGCCGCTT
CCGTGGAAAGCGTGTCGTTCTCCTCAAGCACCTCGAGCAGGGTGTTCTCC
TCGTCACCGGTCCCTTCAAGATCAACGGTGTTCCCCTCCGCCGTGTCAAC
GCTCGTTACGTGATCGCCACCAGCACCCGTATCGACATCAGCGGTGTTGA
CGCCCAGACCATCGAGAAGGTCTCCGCTGCCGACTACTTCACCAAGGAGA
AGAAGGCTGAGAAGAAGACCGAGGAGGCTTTCTTCAAGCAGGGAGAGAAG
CCCCAGAAGAAGGTTGTTGCCAGCGCCCGCGCTAGCGACCAGAAGGCCGT
TGACCAGTCCATCCTCGCCTCCGTCAAGAAGGAGGCTTTCCTCGGAAGCT
ACCTGGCCAGCACCTTCAGCCTCCGCAACGGCGACAAGCCCCACGAGATG
AAGTGGTAGATGTCGGACTCTACTGTTGGCCAGACGAAGCAGTTTGGAAA
GGGCCAGAGGACCGTCCCTCACCCGGCCCAGAAGGCCCAGAAATGGTACC
CCGTTGATGACGAGTCGCAGCCCAAGAAAGTCCGCAAGGCTATCCGTCCC
GCTAAGGTCCGCGAGAGCCTCCAGCCCGGTACCGTTCTGATCCTCCTCGC
CGGCCGCTTCCGTGGAAAGCGTGTCGTTCTCCTCAAGCACCTCGAGCAGG
GTGTTCTCCTCGTCACCGGTCCCTTCAAGATCAACGGTGTTCCCCTCCGC
CGTGTCAACGCTCGTTACGTGATCGCCACCAGCACCCGTATCGACATCAG
CGGTGTTGACGCCCAGACCATCGAGAAGGTCTCCGCTGCCGACTACTTCA
CCAAGGAGAAGAAGGCTGAGAAGAAGACCGAGGAGGCTTTCTTCAAGCAG
GGAGAGAAGCCCCAGAAGAAGGTTGTTGCCAGCGCCCGCGCTAGCGACCA
GAAGGCCGTTGACCAGTCCATCCTCGCCTCCGTCAAGAAGGAGGCTTTCC
TCGGAAGCTACCTGGCCAGCACCTTCAGCCTCCGCAACGGCGACAAGCCC
CACGAGATGAAGTGGTAGATGTCGGACTCTACTGTTGGCCAGACGAAGCA
GTTTGGAAAGGGCCAGAGGACCGTCCCTCACCCGGCCCAGAAGGCCCAGA
AATGGTACCCCGTTGATGACGAGTCGCAGCCCAAGAAAGTCCGCAAGGCT
ATCCGTCCCGCTAAGGTCCGCGAGAGCCTCCAGCCCGGTACCGTTCTGAT
CCTCCTCGCCGGCCGCTTCCGTGGAAAGCGTGTCGTTCTCCTCAAGCACC
TCGAGCAGGGTGTTCTCCTCGTCACCGGTCCCTTCAAGATCAACGGTGTT
CCCCTCCGCCGTGTCAACGCTCGTTACGTGATCGCCACCAGCACCCGTAT
CGACATCAGCGGTGTTGACGCCCAGACCATCGAGAAGGTCTCCGCTGCCG
ACTACTTCACCAAGGAGAAGAAGGCTGAGAAGAAGACCGAGGAGGCTTTC
TTCAAGCAGGGAGAGAAGCCCCAGAAGAAGGTTGTTGCCAGCGCCCGCGC
TAGCGACCAGAAGGCCGTTGACCAGTCCATCCTCGCCTCCGTCAAGAAGG
AGGCTTTCCTCGGAAGCTACCTGGCCAGCACCTTCAGCCTCCGCAACGGC
GACAAGCCCCACGAGATGAAGTGGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012071-T1.utr5p1 | KJC3_012071-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012071-T1.utr3p1 | KJC3_012071-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR008991 |
| DBxref | InterPro:IPR041997 |
| DBxref | InterPro:IPR000915 |
| DBxref | InterPro:IPR014722 |
| DBxref | PFAM:PF01159 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:2484900..2486444 + |
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