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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:2584181..2586438+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012109-T1 ID=KJC3_012109-T1|Name=KJC3_012109-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2258bp|location=Sequence derived from alignment at ch8:2584181..2586438+ (Aspergillus niger KJC3)
CTGCGAAATTCCCTCATCATTACTGGAGTTGGCAAATGATCAAGAGTATA
AAAGCTTCTCCTCTTGGAACTTATGCTCCATGCTTGAGGGGGCGTCAGCC
TTGCCCAGCTCTTGGCAGAATTGCTTGTCTTTTCTTGGCACCCCTCACCG
TCTCCTCCCGGGCCGTGCCGATCCTCACCCGTTGATGCGAGAGATGTCCC
CTTCGGCCGGTCGAGTGTATCAGTGTGCCTCACGTGAAGACTGGCAATGA
GTGTTCTTTCATCAGTAACCCCTCATCTAGCAAGCATGATCCGGTGAGGG
GAATCTGTGAGGGGAATTGGAGAAGATCGAGGTGAGGAGAAGGATAACTA
AACCTGCGACCGTCGCTTGTCACCGCATCAATCCGCAAATAGGTTGGTGG
CTGCGCAATGGCCGTCCTTCTCCGATGTCAAGTCGTCCGAAAGGAGAAGT
ACCGGTCTCTGGAACTACATGTCCGATGCACCTGTTTCGCTTCAAGACGA
GTCGCAGAAACGCTACCATGGCATGGTCCCCGGCCGAGGCAGGGCTTCGA
TCTAGACCAGTGTCTCACGTTATCGAAGCTGAAAGGCTTTGTTGAGAGGC
AAATGATGCTGAAGGATTGTAATTGTGGCCGATGGATGCGGAACCCTGTG
CTGCTTACGATTTCCCCTCTTCCTTTGGCTGGGATGGACTAGTATCAAGT
CAGACTCCGGTGGAAGTGATATAAGGACGATTCTTCACAACATGATAGCA
GCAAAAGTGGAGATGTGCCAAAAAAATGCAACAGACCGCTGCACTTCCTA
AGCGGTTATCCTGCGATCGCTGCTACGCGCAGAAACTGCGGTGTCCGCGG
CCGAGTACGAATGACGATGCAAGTTGCATCCGATGTTTAAGGCAGAAGGT
GCAATGCGTCTATAGCACTGCTTTGCCTAAGGGTCGGCCCCGCGCTGCGG
TCCGTGCTTGTGCTGCTGGAGCGGGAGCTACGGCTGGAGCTCCCCCTATA
ACTACGACGACGACTACTGCTGCCCCGTCTAGCTCAGACACTGCCCCTCC
CATTTTCTCCACCGAAGATCTGGCCTCGTTGACCGGTCTATCCACTTCAG
GATGGCTTCCAGACCCGACTTGGGAGGATAGTTTTTGTTTCCTATCATCC
CAAGTTGTGCCGCAGCCGCCACCTCTTGATACCACTCCTCCGCCTCGTTC
ACTCTCCGCATCAGGTTTAGACAACCCTGAAAATTGCGTTGGGCGGCTTT
CGGACTTAGCAACGCGTCTTCACGCCGTCTATCAAACCACACGAGCGCTG
TCTGATCATCCCCTCATCACCAATGCCGCGTTTGAAGCTGTTGCCACACT
TTTCAATGCCCCCTTGTCACCTCCCAGCGCTGCTACCACCGCCGCCACTA
CCAACCTCCGCGAAACATTCACATCCTCCCGTCATCTCCTAGAAACCATC
TCTCATCTTCTCTGGGCCACACCTAACAACAATCCATCAACTGCACCCGC
AGCTGCGGCAGACGAAACAGTGATATACCATTTCACCATAGCCTGCTACA
GTCTTCTCCTCCTCATATATGCTACCCTCCTTACCGCCCTTCACCGCGAT
GCCCTAACTCACACCCAACCGTCATTGTCGACAACCACCACCACTACCGG
CCCCGACAACAACACCAGCACATGGTGCTCAGCCCCCTCCCTCGTCGAAC
TTCGCCTCGTCCTCCTCTTCCACATGATCACCTATTTTCTGGATCGTCTC
CAGCAAATGATCAGGATGTATACCGCCGAGTTTGAAAAGCAGGCTTCCAA
CAGCACCACCGGAAGACGACCACCCACAAGCGGGAGATGGAGCGAGGAAG
TAGAGGAGATGATGGTGGTCGAAGAGCCTTGGGAGCGGGAGCAGCATATA
CCGCCCCCGCCTCCTCCCACCTCCTCTCTGGGCTCGATCTCTGAGTTGGA
GACCCAAGCTCGAGCGGCACTGATGCAGCTGCGAATGTCGTTGGTGGCTA
CAAGGGGTGGTTTGGTCGATAACTAGAGTGTATTTCTGCTGTGGTCATCA
TGCGTAGAACCCTCTTCTTCGGTGGATAGGTCTTTTTTTTTTTTTTTTTT
TTTTTTCTCTTGAAGCTGAGTAAGGCACATGAGTGATGACTGTTTCGTAG
ACGTCGTTGAGTTATATTAGCCTTGGGATTGACTGGGTAGCATTAGAAGC
AGACTGTGCCAACAAAGACAGGGGTTTAGATAGCGTTTTGCTTAGTGATG
TACGGTAT back to topCoding sequence (CDS) from alignment at ch8:2584181..2586438+ >KJC3_012109-T1 ID=KJC3_012109-T1|Name=KJC3_012109-T1|organism=Aspergillus niger KJC3|type=CDS|length=1251bp|location=Sequence derived from alignment at ch8:2584181..2586438+ (Aspergillus niger KJC3)
ATGCAACAGACCGCTGCACTTCCTAAGCGGTTATCCTGCGATCGCTGCTA
CGCGCAGAAACTGCGGTGTCCGCGGCCGAGTACGAATGACGATGCAAGTT
GCATCCGATGTTTAAGGCAGAAGGTGCAATGCGTCTATAGCACTGCTTTG
CCTAAGGGTCGGCCCCGCGCTGCGGTCCGTGCTTGTGCTGCTGGAGCGGG
AGCTACGGCTGGAGCTCCCCCTATAACTACGACGACGACTACTGCTGCCC
CGTCTAGCTCAGACACTGCCCCTCCCATTTTCTCCACCGAAGATCTGGCC
TCGTTGACCGGTCTATCCACTTCAGGATGGCTTCCAGACCCGACTTGGGA
GGATAGTTTTTGTTTCCTATCATCCCAAGTTGTGCCGCAGCCGCCACCTC
TTGATACCACTCCTCCGCCTCGTTCACTCTCCGCATCAGGTTTAGACAAC
CCTGAAAATTGCGTTGGGCGGCTTTCGGACTTAGCAACGCGTCTTCACGC
CGTCTATCAAACCACACGAGCGCTGTCTGATCATCCCCTCATCACCAATG
CCGCGTTTGAAGCTGTTGCCACACTTTTCAATGCCCCCTTGTCACCTCCC
AGCGCTGCTACCACCGCCGCCACTACCAACCTCCGCGAAACATTCACATC
CTCCCGTCATCTCCTAGAAACCATCTCTCATCTTCTCTGGGCCACACCTA
ACAACAATCCATCAACTGCACCCGCAGCTGCGGCAGACGAAACAGTGATA
TACCATTTCACCATAGCCTGCTACAGTCTTCTCCTCCTCATATATGCTAC
CCTCCTTACCGCCCTTCACCGCGATGCCCTAACTCACACCCAACCGTCAT
TGTCGACAACCACCACCACTACCGGCCCCGACAACAACACCAGCACATGG
TGCTCAGCCCCCTCCCTCGTCGAACTTCGCCTCGTCCTCCTCTTCCACAT
GATCACCTATTTTCTGGATCGTCTCCAGCAAATGATCAGGATGTATACCG
CCGAGTTTGAAAAGCAGGCTTCCAACAGCACCACCGGAAGACGACCACCC
ACAAGCGGGAGATGGAGCGAGGAAGTAGAGGAGATGATGGTGGTCGAAGA
GCCTTGGGAGCGGGAGCAGCATATACCGCCCCCGCCTCCTCCCACCTCCT
CTCTGGGCTCGATCTCTGAGTTGGAGACCCAAGCTCGAGCGGCACTGATG
CAGCTGCGAATGTCGTTGGTGGCTACAAGGGGTGGTTTGGTCGATAACTA
G back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012109-T1.utr5p1 | KJC3_012109-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012109-T1.utr3p1 | KJC3_012109-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_8.5 |
| Note | antiSMASH:Cluster_8.4 |
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:2584181..2586438 + |
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