You are here

Home

KJC3_012120-T1, KJC3_012120-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012120-T1
Unique NameKJC3_012120-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:2622208..2623515-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012120-T1 ID=KJC3_012120-T1|Name=KJC3_012120-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1308bp|location=Sequence derived from alignment at ch8:2622208..2623515- (Aspergillus niger KJC3)
CTCCCTTCAACTTTCAATCTCCAAGGAATTCATAGCAGGAATAATGCCAG
TGTAACCTGCCCGAAACCGTTTCTCTGACAGCCCCCGCGAACATTCCAAT
ATTTCGCAGGCATCCGGCTTTCCCTCCCCAATCCGGAACCAACAAATCCG
GATCATGGCAAGGGATGCAACCACCAATACACAATACACTCGGTGAATGG
ATCATTGTCTCACCAATGTGTCCCCTTACACCGACATGCATGGGCCCTTA
TAAAGCGGCCCCGGAATCAAGGGGGACGAGGGGTTGCAGCACAACAAAGA
CACAGACTGCCGACTCGCTGAATTCGTCCATTGTTGACCGCGATCGTCGT
TCTTTCTTCATTCAGGTACCGCCATTCTCCTCTTGCATCGAGTTATAGTT
ATATACTTATATCCAACCTGCAAATCCTTCGCAAATCTGCTCATATCCTC
TCACCCACTAACTCATCCACGCATTCTTAGAGTCTCAAACTTGCTTGCGA
AAACAAAGATGCTTTTCAAATCCACCTTCCTCGCAACTGCCACGGCTCTG
TGCCTCTCCGCCACGGCTACAGCTCAGGGCGCCAGCACCAATGCCCCCGT
CGTCACAGACAATGATGATGTCCTCTACTACGCCCAGCTCCAGCCCAAGG
ATAACACCACAGTCCGCGGGTCTGTAACCATCTTCCCTAAGCCCGATAGT
GTGGGTGTCCTTGTTTCGGCGCAGTTCTGGGGCATCCCCGACAATGACCA
GCAGTTGGGTACGCCTCCCTTTCCTCCCGCTCCTTCAATATCTATCCCAT
CATATGGGCTTGTGTTTAGAGTTTCCTACGAATCCGAACCCAAACTCAAA
CTTTGAGTTAATAACAAACCTACACCTCAATACTAACCTCTTTATGAAAT
TGATCAGTCTACCACATCCACCAAAAGCCAGTCCCTCAGGACGGAAACTG
CTACAGCACCGGTGCACACCTGGACCCTTACGGCCGGGGCGATGCCACCC
CCTGCGACATCAACGCGCCACAGACCTGTCAAGTTGGCGACCTCAGTGGC
AAGCATGGACCGATCTGGGCGCCCGACAACGAGGTATTCTCCACCACGTA
TACGGACTGGTTCCTTTCCAATGTGGAGGGGGAGCCTGCCTTCTTTGGAA
ACCTCTCGTTGGTCGTGCATGCAGCGGATAACTCGCGCCTGGCGTGTGGA
AACTTCGTGCAGCTGAAGTAAGACTGGATGAATTATTTCTGCTTAGGACC
TTCATGTATTGTTAGTCTAGTGTGTAGGGCTAGTCTTGGATTAATGCTTT
ACCATACA
back to top

Coding sequence (CDS) from alignment at ch8:2622208..2623515-

>KJC3_012120-T1 ID=KJC3_012120-T1|Name=KJC3_012120-T1|organism=Aspergillus niger KJC3|type=CDS|length=1128bp|location=Sequence derived from alignment at ch8:2622208..2623515- (Aspergillus niger KJC3)
TCTACCACATCCACCAAAAGCCAGTCCCTCAGGACGGAAACTGCTACAGC
ACCGGTGCACACCTGGACCCTTACGGCCGGGGCGATGCCACCCCCTGCGA
CATCAACGCGCCACAGACCTGTCAAGTTGGCGACCTCAGTGGCAAGCATG
GACCGATCTGGGCGCCCGACAACGAGGTATTCTCCACCACGTATACGGAC
TGGTTCCTTTCCAATGTGGAGGGGGAGCCTGCCTTCTTTGGAAACCTCTC
GTTGGTCGTGCATGCAGCGGATAACTCGCGCCTGGCGTGTGGAAACTTCG
TGCAGCTGAAGTAAATGCTTTTCAAATCCACCTTCCTCGCAACTGCCACG
GCTCTGTGCCTCTCCGCCACGGCTACAGCTCAGGGCGCCAGCACCAATGC
CCCCGTCGTCACAGACAATGATGATGTCCTCTACTACGCCCAGCTCCAGC
CCAAGGATAACACCACAGTCCGCGGGTCTGTAACCATCTTCCCTAAGCCC
GATAGTGTGGGTGTCCTTGTTTCGGCGCAGTTCTGGGGCATCCCCGACAA
TGACCAGCAGTTGGTCTACCACATCCACCAAAAGCCAGTCCCTCAGGACG
GAAACTGCTACAGCACCGGTGCACACCTGGACCCTTACGGCCGGGGCGAT
GCCACCCCCTGCGACATCAACGCGCCACAGACCTGTCAAGTTGGCGACCT
CAGTGGCAAGCATGGACCGATCTGGGCGCCCGACAACGAGGTATTCTCCA
CCACGTATACGGACTGGTTCCTTTCCAATGTGGAGGGGGAGCCTGCCTTC
TTTGGAAACCTCTCGTTGGTCGTGCATGCAGCGGATAACTCGCGCCTGGC
GTGTGGAAACTTCGTGCAGCTGAAGTAAATGCTTTTCAAATCCACCTTCC
TCGCAACTGCCACGGCTCTGTGCCTCTCCGCCACGGCTACAGCTCAGGGC
GCCAGCACCAATGCCCCCGTCGTCACAGACAATGATGATGTCCTCTACTA
CGCCCAGCTCCAGCCCAAGGATAACACCACAGTCCGCGGGTCTGTAACCA
TCTTCCCTAAGCCCGATAGTGTGGGTGTCCTTGTTTCGGCGCAGTTCTGG
GGCATCCCCGACAATGACCAGCAGTTGG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006801superoxide metabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_012120KJC3_012120Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012120-T1KJC3_012120-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012120-T1.cdsKJC3_012120-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012120-T1.utr3p1KJC3_012120-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012120-T1.exon3KJC3_012120-T1.exon3Aspergillus niger KJC3exon
KJC3_012120-T1.exon2KJC3_012120-T1.exon2Aspergillus niger KJC3exon
KJC3_012120-T1.exon1KJC3_012120-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012120-T1.utr5p2KJC3_012120-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_012120-T1.utr5p1KJC3_012120-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteSECRETED:SignalP(1-22)
DBxrefInterPro:IPR036423
DBxrefInterPro:IPR001424
DBxrefPFAM:PF00080
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:2622208..2623515 -
Powered by Drupal