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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:2632105..2633737+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012125-T1 ID=KJC3_012125-T1|Name=KJC3_012125-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1633bp|location=Sequence derived from alignment at ch8:2632105..2633737+ (Aspergillus niger KJC3)
CAGACCTCGCTGCTGTTTCTCCTTCCCACCGAATTCCCTTGTTCCTTCCG
ATTAGCGCGTCATATACACGATTCTTCTCCTTTTGTACAGGACAGCTAGC
CGACCTCGGAGCTTAGTGAGCAGAATCCCGCCAGCTTGACAATCGGAACG
CGGCGACGAAGTATTTGCTGCGAGTCAAGCTACTAGCTTCCAACCTAGTG
CACGAGTGCATTCGACTTGGCTACGGAATTCTAAATTATTCTCCGGATCG
CCTTTACTACGAGTCAGCTGGGATAGGTGACCTTGGATGCTGGTGCATTT
TTCGCTGCTTGGCTTGTTTTACTGTTCGAAGTATTGGTGATTCGGTACTT
GACCTTGACACTTTTGATCATCATGTCGCTTCACTCTTATATTAACAGTA
AGTTTGGTCTCAAGAGATCCATTTCATGTCTGGGATTTAGTCTCATGGTC
AGTGCTAACGTATGTGGTTTTACCCCGATATAGAGAAAGTATGCATCCTG
ACGGTTGACGGACGGACACTCCTGGGGACATTACTCTCGACCGACCAGCT
CACGAACCTGGTTCTCCTGGACACGATCGAGCGAATCATCCGGACCCCCG
ACGACCCGGAACCCAGTTCCCAGATTGAACATGGGCTGTATCTGATCCGA
GGCGACAACGTTGTATTATGCGGAGAGGTGGACGAAGCCATTGACAACGA
CATCGACTGGACGAAGGTCAGGGGAGAAGTGGTCAAAGGTACCAAGAACG
CATGAAACAGCGGGGAAGCGGTGTTCCGATGATTATCTACATGACAAGGA
GTTTCTTTTTCTCGCAGCAAGAAGAAAGGAAAAAAAGAGGATGAGCGTTT
TATGTGTACGATGGGGAAGTGGACGAGTTTCAGCGTAACATTGGTGGCTA
GTGCGTATATGGGTCAGGCGGAACCCCCCTCCCTCTCTTTGTGGTGGTCT
TCGTTCGTCAATTAAGGGGAGGGGGGCAGTAAGCGCGTGCCAGTGTCAGT
GCCGGCCAGGGGAAAATGTTGTTATGGAGGCGACAGAAAGAAAGCTACGC
GCGCGACAGATTTACAGGAGGAGATTGGTCGGTACCAGATGATCCGTGGA
CATGACCGGTGCGTCATTGGGCGGGGATCGCTTTCTCGTGTGATATGAAA
AAGAGTGTGTGTGTGTGAAAGAGAGAGCTACAAGTGGGACGCGCATGGGC
TCACCAGGGCGCTCATCTGATGTGATATCGGGGCCAAGTTTAGCGGCTCG
ACGGGAGTTCTTGCGTTTGGGAATTGCATGGGATCAAGGAAAGGAATAAA
AAAAAGGGAAGTATGGGACTAAACAGACAAGGCATTGGGATGGCCAAAGG
ACGGAATGGGAGAGGAGAGGAGGGGGGAAGAGATATCCAACACTCCTGCG
CGGCAGGGATGATCCATTGGACGGCAGTTTCATTGGGTGTTGGGGAGACC
AGCCGAAGTGATTGAGACGCGGGATGTTCAGGGCAGCGGTTAAGCTGGAT
ATGCAAGGTGATCAGCCCTGGACAGAGAGGAGGAGGGAGGGGGGAAGGGG
GGAAAGGATAGGACAAGGACATAAGTTGACCATTTTAACCATAATAATAT
CATAATCAATATGAAGAAGCAAAGACACTCATC back to topCoding sequence (CDS) from alignment at ch8:2632105..2633737+ >KJC3_012125-T1 ID=KJC3_012125-T1|Name=KJC3_012125-T1|organism=Aspergillus niger KJC3|type=CDS|length=594bp|location=Sequence derived from alignment at ch8:2632105..2633737+ (Aspergillus niger KJC3)
ATGTCGCTTCACTCTTATATTAACAAGAAAGTATGCATCCTGACGGTTGA
CGGACGGACACTCCTGGGGACATTACTCTCGACCGACCAGCTCACGAACC
TGGTTCTCCTGGACACGATCGAGCGAATCATCCGGACCCCCGACGACCCG
GAACCCAGTTCCCAGATTGAACATGGGCTGTATCTGATCCGAGGCGACAA
CGTTGTATTATGCGGAGAGGTGGACGAAGCCATTGACAACGACATCGACT
GGACGAAGGTCAGGGGAGAAGTGGTCAAAGGTACCAAGAACGCATGAATG
TCGCTTCACTCTTATATTAACAAGAAAGTATGCATCCTGACGGTTGACGG
ACGGACACTCCTGGGGACATTACTCTCGACCGACCAGCTCACGAACCTGG
TTCTCCTGGACACGATCGAGCGAATCATCCGGACCCCCGACGACCCGGAA
CCCAGTTCCCAGATTGAACATGGGCTGTATCTGATCCGAGGCGACAACGT
TGTATTATGCGGAGAGGTGGACGAAGCCATTGACAACGACATCGACTGGA
CGAAGGTCAGGGGAGAAGTGGTCAAAGGTACCAAGAACGCATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005688 | U6 snRNP |
| GO:0046540 | U4/U6 x U5 tri-snRNP complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000398 | mRNA splicing, via spliceosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012125-T1.utr5p1 | KJC3_012125-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012125-T1.utr3p1 | KJC3_012125-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR010920 |
| DBxref | InterPro:IPR034103 |
| DBxref | InterPro:IPR001163 |
| DBxref | PFAM:PF01423 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:2632105..2633737 + |
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