You are here

Home

KJC3_012158-T1, KJC3_012158-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012158-T1
Unique NameKJC3_012158-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:2756432..2757302-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012158-T1 ID=KJC3_012158-T1|Name=KJC3_012158-T1|organism=Aspergillus niger KJC3|type=mRNA|length=871bp|location=Sequence derived from alignment at ch8:2756432..2757302- (Aspergillus niger KJC3)
GTTCCGTGTTTGGTTCTCCGTCGTCCTTTACGTTCCCCGACGCTATTTTC
ACAGTCCAGACCCCACTCTACCTTGTCGGCGCCATGTTGTACGAACTGAT
CGCTGTTGTATGTTTCCTGGCGATTCTGTTGGATGACTTTAACTATGTGC
TTTGGATTGATGCTAATTGACGAGTGCAGGTCCGTCCCGGTAGCCTCCAG
GAGGTTAGAGAGTACGTGCCTGCCGACCCTATCTGACCACCTCATATCCT
TACGCAACATCCTACTATCGCCAAACCATCATTATCCACGAATTTTCACT
GACAGACGACAGTATCGCCCGCAATGCCGGCATCCAGGTTCTCCGCTCCG
GCGGCGTAGTCCGCGGATTCACCAACTGGGGTACCTTCCGTCTGCCCAGG
CCCACGACGAAGCATCAGGCCCGCTACAGGGAAGGCCACCACTTCATCAT
GCGCTTCGATGCCTCCGGTCCCGTGCAAGCGGCTGTCCGCAGAACTCTTG
GTCTCGATCCCCGGATGGTTCGGTTCTCCGTTGTCAAGTTGGGCGACAAG
CTGGAGGAAATCAAGCACGTCGATGGCAAGGTTGAGTGGAACAACAACCG
TAGCATCTCCGAAACGTTTTAAATGTGTTTTGAATGTGATGCGGATTGGT
TGCAGCTTTGCGATTGTTCGTCGTTTGGGACATGGAAAATGATTTAATTG
TCAATGTATTATCTATGGGATGGGTTTCTTTGTATATCATATCAGCATTA
TCGGCGCATATACCTTACTTGGCAGATTTAGTCAATAAAGATGGTGATCT
GTTTTCTTCTGCGGCAGTTTTGTCATTATGCGTTCATCAAGGTTGAGCAT
TGGAACATCCTCGGATCAGGG
back to top

Coding sequence (CDS) from alignment at ch8:2756432..2757302-

>KJC3_012158-T1 ID=KJC3_012158-T1|Name=KJC3_012158-T1|organism=Aspergillus niger KJC3|type=CDS|length=1098bp|location=Sequence derived from alignment at ch8:2756432..2757302- (Aspergillus niger KJC3)
TATCGCCCGCAATGCCGGCATCCAGGTTCTCCGCTCCGGCGGCGTAGTCC
GCGGATTCACCAACTGGGGTACCTTCCGTCTGCCCAGGCCCACGACGAAG
CATCAGGCCCGCTACAGGGAAGGCCACCACTTCATCATGCGCTTCGATGC
CTCCGGTCCCGTGCAAGCGGCTGTCCGCAGAACTCTTGGTCTCGATCCCC
GGATGGTTCGGTTCTCCGTTGTCAAGTTGGGCGACAAGCTGGAGGAAATC
AAGCACGTCGATGGCAAGGTTGAGTGGAACAACAACCGTAGCATCTCCGA
AACGTTTTAAGTCCGTCCCGGTAGCCTCCAGGAGGTTAGAGAATGTTGTA
CGAACTGATCGCTGTTTATCGCCCGCAATGCCGGCATCCAGGTTCTCCGC
TCCGGCGGCGTAGTCCGCGGATTCACCAACTGGGGTACCTTCCGTCTGCC
CAGGCCCACGACGAAGCATCAGGCCCGCTACAGGGAAGGCCACCACTTCA
TCATGCGCTTCGATGCCTCCGGTCCCGTGCAAGCGGCTGTCCGCAGAACT
CTTGGTCTCGATCCCCGGATGGTTCGGTTCTCCGTTGTCAAGTTGGGCGA
CAAGCTGGAGGAAATCAAGCACGTCGATGGCAAGGTTGAGTGGAACAACA
ACCGTAGCATCTCCGAAACGTTTTAAGTCCGTCCCGGTAGCCTCCAGGAG
GTTAGAGAATGTTGTACGAACTGATCGCTGTTTATCGCCCGCAATGCCGG
CATCCAGGTTCTCCGCTCCGGCGGCGTAGTCCGCGGATTCACCAACTGGG
GTACCTTCCGTCTGCCCAGGCCCACGACGAAGCATCAGGCCCGCTACAGG
GAAGGCCACCACTTCATCATGCGCTTCGATGCCTCCGGTCCCGTGCAAGC
GGCTGTCCGCAGAACTCTTGGTCTCGATCCCCGGATGGTTCGGTTCTCCG
TTGTCAAGTTGGGCGACAAGCTGGAGGAAATCAAGCACGTCGATGGCAAG
GTTGAGTGGAACAACAACCGTAGCATCTCCGAAACGTTTTAAGTCCGTCC
CGGTAGCCTCCAGGAGGTTAGAGAATGTTGTACGAACTGATCGCTGTT
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0019843rRNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_012158KJC3_012158Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012158-T1KJC3_012158-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012158-T1.cdsKJC3_012158-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012158-T1.utr3p1KJC3_012158-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012158-T1.exon3KJC3_012158-T1.exon3Aspergillus niger KJC3exon
KJC3_012158-T1.exon2KJC3_012158-T1.exon2Aspergillus niger KJC3exon
KJC3_012158-T1.exon1KJC3_012158-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012158-T1.utr5p1KJC3_012158-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR035980
DBxrefInterPro:IPR000529
DBxrefInterPro:IPR014717
DBxrefPFAM:PF01250
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:2756432..2757302 -
Powered by Drupal