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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:2961955..2964138+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012232-T1 ID=KJC3_012232-T1|Name=KJC3_012232-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2184bp|location=Sequence derived from alignment at ch8:2961955..2964138+ (Aspergillus niger KJC3)
CACGCTGTGTAGGTGAGCTTGTGTAAGTGCAAAGTTTCATGAAAGGAACT
ATCATAACACTCATGTAGGGGAATCTTCCTTCCGGTGATGATTGCTATTC
TTCCACTACCACCGCAGATCACGCAATATTTTCCTCATCAGCTCGTGTCG
GTACTACAATGGTTCGCATTCTGGGCATTCTCTGCGCTTCTCATCATTCC
CTGGCTATTTTGTGTCAATAGATTCGTGATTCACTCCTTAGGGCGAACCA
AAAGGGTGAAGGAGGCTTTGGATGACCGCACCGCACCGAAAACTGTCATC
GTCATGCCAGTATACAAAGAAGACCCCGTCGTTCTGATCAAGGCAATTGA
CTCAGTCGTTAACAGTGACTATCCTAGTTATTGCATCCATGTCTTTCTGT
CCTATGATGGATGCAACATCGACGAACCTTATCTCCAAGTGATCAATCAT
CTTGGAATTCCGATTTCGCTGGAGAGTTACCCGCAAAGCATTGATGTGAC
ATACCAAGGAGCAAGAATCACTGTGTCAAGATTCAAGCACGGTGGCAAAC
GCCATTGCCAGAAACAGACCTTCAGGCTGATTGACAAGGTTTATGCCGAC
TATCTAAAGCATCATGACGATCTATTTCTGTTGTTCATCGATTCAGACTG
CATTCTTGACAAACTATGTCTGCAGAACTTCATGTACGACATGGAATTGA
AACCAGGGAGTCAGCATAATATGTTAGCGATGACAGGCATCATCACTTCG
ACCACAGAGAGAAATTCCCTGATAACTGTTCTGCAGGACATGGAATACAT
TCATGGGCAGCTTGTTGAACGTACTGTGGAGTCTGGTTGCGGCGCTGTAA
CCTGCCTACCGGGAGCACTGACAATCCTACGATTCTCAGCTTTCCGCAAG
ATGGCGAGATACTACTTCGCAGACAAAGCTGAGCAATGTGAGGATCTCTT
CGACTATGGCAAGTGTCACTTGGGAGAAGATCGCTGGTTAACGCACTTAT
TTATGATCGGGGCGATTGAACGCTATCAGATTCAGATGTGCACAAGTGCT
TTCTGCAAGACAGAGGCGGTACAGACATTCTGTAGCCTGCTTAAACAACG
ACGCCGATGGTTTCTCGGCTACATAACCAACGAAGTGTGTATGCTGACTG
ATGTCAGATTGTGGAAACGCTACCCACTATTGTGTCTGGTGCGCTTCATG
CAGAACACGATCCGGACGACTGCATTGCTATTCTTCATTCTGGCGATCTC
GATCATCACAACTTCCAGCAAGATCAAGAACCTGCCTGTTGGCTTCATTG
CAGTTTCGCTCGGTCTCAATTACATCCTCATGGTTTATTTTGGGATAAGA
CTCAAACGATTCAAAGCCTGGCTCTATCCCCTGATGTTCATCCTGAATCC
TTTCTTCAATTGGCTTTACATAGTGTACGGGATTTTTACTGCAGGCCAGC
GAACGTGGGGCGGGCCTCGAGCTGACGCAGCCAAAGCTGATGAGCATACT
ACACCAGAGGAAGCGGTCGAGAAGGCTAGGGTCCAGGGGGATGAGCTAAA
TGTCCAGGTAGACACCTTTCGAACGAAAACTGAAGAGAAAGGCGTTCCAA
TCCGGCCTTCATCCAAGGTCAATGGTCGCCTCTCATTTGCGCCACAGCTT
CCAGATCGGTATTATGACTATCAAGGTGCTCTGGGGACCAGTCTCGCTAA
ATACCTGACCCCCCTTCCAGACGTGCCTCGCATCGCCCTTCACCCACATT
GCTCATCTGACTCGGTCGCGACATCCGACTCTGGAGGTAATTCGATTTAT
TTGCCCCAGCATGTGGAAACCTTGATGAGCGCCGAGGAACGAGCAAAACT
CCACATTAGTAGCCAGGCGCTGGAGTCCACCGGACTTCTAAACACACAGG
AGGCAGACGGTGGAGAGCGTGGCCTGTACGTGCAGTCTAACGAGGACCTG
GAAGACAACCGGGCGTATGAAATGCATACTATTGAGTCAGGGAGCGGCAT
TCCGAGTGGGAAAGCCCCGGTACTATCGTCAAGCGTGCCACAATCTGGGA
TGCAACAATCTAGAGCTGTTCCTGGGAATATGTCTCAGCCTCATGAACAC
TTGCCACAGCCAAAATATACAAAGCGTCCTAGCAGGATTCCGAGGCAGAA
GAGGAGATATATGCAACCAGAACAAATGGTTTGA back to topCoding sequence (CDS) from alignment at ch8:2961955..2964138+ >KJC3_012232-T1 ID=KJC3_012232-T1|Name=KJC3_012232-T1|organism=Aspergillus niger KJC3|type=CDS|length=2097bp|location=Sequence derived from alignment at ch8:2961955..2964138+ (Aspergillus niger KJC3)
ATGATTGCTATTCTTCCACTACCACCGCAGATCACGCAATATTTTCCTCA
TCAGCTCGTGTCGGTACTACAATGGTTCGCATTCTGGGCATTCTCTGCGC
TTCTCATCATTCCCTGGCTATTTTGTGTCAATAGATTCGTGATTCACTCC
TTAGGGCGAACCAAAAGGGTGAAGGAGGCTTTGGATGACCGCACCGCACC
GAAAACTGTCATCGTCATGCCAGTATACAAAGAAGACCCCGTCGTTCTGA
TCAAGGCAATTGACTCAGTCGTTAACAGTGACTATCCTAGTTATTGCATC
CATGTCTTTCTGTCCTATGATGGATGCAACATCGACGAACCTTATCTCCA
AGTGATCAATCATCTTGGAATTCCGATTTCGCTGGAGAGTTACCCGCAAA
GCATTGATGTGACATACCAAGGAGCAAGAATCACTGTGTCAAGATTCAAG
CACGGTGGCAAACGCCATTGCCAGAAACAGACCTTCAGGCTGATTGACAA
GGTTTATGCCGACTATCTAAAGCATCATGACGATCTATTTCTGTTGTTCA
TCGATTCAGACTGCATTCTTGACAAACTATGTCTGCAGAACTTCATGTAC
GACATGGAATTGAAACCAGGGAGTCAGCATAATATGTTAGCGATGACAGG
CATCATCACTTCGACCACAGAGAGAAATTCCCTGATAACTGTTCTGCAGG
ACATGGAATACATTCATGGGCAGCTTGTTGAACGTACTGTGGAGTCTGGT
TGCGGCGCTGTAACCTGCCTACCGGGAGCACTGACAATCCTACGATTCTC
AGCTTTCCGCAAGATGGCGAGATACTACTTCGCAGACAAAGCTGAGCAAT
GTGAGGATCTCTTCGACTATGGCAAGTGTCACTTGGGAGAAGATCGCTGG
TTAACGCACTTATTTATGATCGGGGCGATTGAACGCTATCAGATTCAGAT
GTGCACAAGTGCTTTCTGCAAGACAGAGGCGGTACAGACATTCTGTAGCC
TGCTTAAACAACGACGCCGATGGTTTCTCGGCTACATAACCAACGAAGTG
TGTATGCTGACTGATGTCAGATTGTGGAAACGCTACCCACTATTGTGTCT
GGTGCGCTTCATGCAGAACACGATCCGGACGACTGCATTGCTATTCTTCA
TTCTGGCGATCTCGATCATCACAACTTCCAGCAAGATCAAGAACCTGCCT
GTTGGCTTCATTGCAGTTTCGCTCGGTCTCAATTACATCCTCATGGTTTA
TTTTGGGATAAGACTCAAACGATTCAAAGCCTGGCTCTATCCCCTGATGT
TCATCCTGAATCCTTTCTTCAATTGGCTTTACATAGTGTACGGGATTTTT
ACTGCAGGCCAGCGAACGTGGGGCGGGCCTCGAGCTGACGCAGCCAAAGC
TGATGAGCATACTACACCAGAGGAAGCGGTCGAGAAGGCTAGGGTCCAGG
GGGATGAGCTAAATGTCCAGGTAGACACCTTTCGAACGAAAACTGAAGAG
AAAGGCGTTCCAATCCGGCCTTCATCCAAGGTCAATGGTCGCCTCTCATT
TGCGCCACAGCTTCCAGATCGGTATTATGACTATCAAGGTGCTCTGGGGA
CCAGTCTCGCTAAATACCTGACCCCCCTTCCAGACGTGCCTCGCATCGCC
CTTCACCCACATTGCTCATCTGACTCGGTCGCGACATCCGACTCTGGAGG
TAATTCGATTTATTTGCCCCAGCATGTGGAAACCTTGATGAGCGCCGAGG
AACGAGCAAAACTCCACATTAGTAGCCAGGCGCTGGAGTCCACCGGACTT
CTAAACACACAGGAGGCAGACGGTGGAGAGCGTGGCCTGTACGTGCAGTC
TAACGAGGACCTGGAAGACAACCGGGCGTATGAAATGCATACTATTGAGT
CAGGGAGCGGCATTCCGAGTGGGAAAGCCCCGGTACTATCGTCAAGCGTG
CCACAATCTGGGATGCAACAATCTAGAGCTGTTCCTGGGAATATGTCTCA
GCCTCATGAACACTTGCCACAGCCAAAATATACAAAGCGTCCTAGCAGGA
TTCCGAGGCAGAAGAGGAGATATATGCAACCAGAACAAATGGTTTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR029044 |
| DBxref | PFAM:PF13632 |
| DBxref | PFAM:PF13641 |
| DBxref | PFAM:PF03142 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:2961955..2964138 + |
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