You are here

Home

KJC3_012257-T1, KJC3_012257-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012257-T1
Unique NameKJC3_012257-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:3032446..3033662-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012257-T1 ID=KJC3_012257-T1|Name=KJC3_012257-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1217bp|location=Sequence derived from alignment at ch8:3032446..3033662- (Aspergillus niger KJC3)
CCAACCCGCGGACGAGAGCTCTCCCCTCCGTCCCTTCAGAAATAACATTA
TTTACCTTATCCACCTCTACACACAAAGTCTCTCTTTACGCACCAATCAA
TCGCCATGCCCCCGCGCAAGAAAGCCAAACTTACCCCCCAAAGCGAGAAT
GCCGAGCCGTCCGCAAGCACCGCTGACCAGCCAACAACCGCGGATTACGA
CCCAGTGACAGATCCCTGGACGGACGAGCAAGAGACCGCGTTATTGAAGG
GGATCATAAAATGGAAGCCTGTCGGTACGTTGACCACAACCCTTCTCCCC
TCGCGCGCAGGGGAAACACTATACTTGGAGCAGTGTGTCGCTAACGCGGC
CCTCTTTCTCTTTCAAAAGGCATGCACAAGCACTTCCGTATGATCGCGAT
TTCGGAGTTCATGAAAAGCCAAGGCTATGCGCCCGCGCACGCAGAACACA
CACGGATACCGGGGATATGGAAGAAGCTGGGGACATTATACAATCTTCCG
GCTTTGGATGAGCGGGTGGGTTGATGCCTTCTCTCGTCCATGGAGATCAT
GTCCTTTGGTTTCTGGCTTGTGCTAACATTCATCTAATATTACGGAATGA
GCAGGAAGATTCATTGATAACAGACACCGCCGAGGACTCAAAGGAATTCT
ACTGCCCGTTCGAATTACCCCAGGATGAATACGGAGAATTGATGTTCGAA
CGGCGGCTGGCGATGGAAGGAACCGCATCTCCTGATCCTAGCACGCATGC
GGGTTCGAGGAGGGGGAGCACGGTGGCTGATACGGACGGTGCGTATATAC
TATCTCTGCCTTGGTTGTCAACTGGTTGTTGGGGAAAGCATACTAATCGC
AATCGATTCATCTCATACAGAACCTCGCTCTTCCCCCGCGCCATCACGAG
GACGGAAGTCAGGTCGTGGCGGGCGTCCAGCGGGACGAGGGACGCGTTCG
TCGCGTCTTCATGTCGAGGTCGAACCGCCGGCGAAGGGATCCGGAGCTGC
GGAGGAAGAAGCGGATTCTGGCGAGGAGACAGGCGCAAATGAAGAAGGCG
ATGAAGATGGTTCGGACGCTGCGAAGGATGATAGTGAGGTCGATGAGGAA
GCGGAGGGGGGCTCGCCTACGACGCGAAGTACGCGTGCCCAGACATCGAG
GACGAAGCAGAAGGGCAGAGGTACAGCAGGCACCGGAACCCGGAGGGGTC
GACGGCGTCAGCCTTGA
back to top

Coding sequence (CDS) from alignment at ch8:3032446..3033662-

>KJC3_012257-T1 ID=KJC3_012257-T1|Name=KJC3_012257-T1|organism=Aspergillus niger KJC3|type=CDS|length=3384bp|location=Sequence derived from alignment at ch8:3032446..3033662- (Aspergillus niger KJC3)
AACCTCGCTCTTCCCCCGCGCCATCACGAGGACGGAAGTCAGGTCGTGGC
GGGCGTCCAGCGGGACGAGGGACGCGTTCGTCGCGTCTTCATGTCGAGGT
CGAACCGCCGGCGAAGGGATCCGGAGCTGCGGAGGAAGAAGCGGATTCTG
GCGAGGAGACAGGCGCAAATGAAGAAGGCGATGAAGATGGTTCGGACGCT
GCGAAGGATGATAGTGAGGTCGATGAGGAAGCGGAGGGGGGCTCGCCTAC
GACGCGAAGTACGCGTGCCCAGACATCGAGGACGAAGCAGAAGGGCAGAG
GTACAGCAGGCACCGGAACCCGGAGGGGTCGACGGCGTCAGCCTTGAGAA
GATTCATTGATAACAGACACCGCCGAGGACTCAAAGGAATTCTACTGCCC
GTTCGAATTACCCCAGGATGAATACGGAGAATTGATGTTCGAACGGCGGC
TGGCGATGGAAGGAACCGCATCTCCTGATCCTAGCACGCATGCGGGTTCG
AGGAGGGGGAGCACGGTGGCTGATACGGACGGCATGCACAAGCACTTCCG
TATGATCGCGATTTCGGAGTTCATGAAAAGCCAAGGCTATGCGCCCGCGC
ACGCAGAACACACACGGATACCGGGGATATGGAAGAAGCTGGGGACATTA
TACAATCTTCCGGCTTTGGATGAGCGGATGCCCCCGCGCAAGAAAGCCAA
ACTTACCCCCCAAAGCGAGAATGCCGAGCCGTCCGCAAGCACCGCTGACC
AGCCAACAACCGCGGATTACGACCCAGTGACAGATCCCTGGACGGACGAG
CAAGAGACCGCGTTATTGAAGGGGATCATAAAATGGAAGCCTGTCGAACC
TCGCTCTTCCCCCGCGCCATCACGAGGACGGAAGTCAGGTCGTGGCGGGC
GTCCAGCGGGACGAGGGACGCGTTCGTCGCGTCTTCATGTCGAGGTCGAA
CCGCCGGCGAAGGGATCCGGAGCTGCGGAGGAAGAAGCGGATTCTGGCGA
GGAGACAGGCGCAAATGAAGAAGGCGATGAAGATGGTTCGGACGCTGCGA
AGGATGATAGTGAGGTCGATGAGGAAGCGGAGGGGGGCTCGCCTACGACG
CGAAGTACGCGTGCCCAGACATCGAGGACGAAGCAGAAGGGCAGAGGTAC
AGCAGGCACCGGAACCCGGAGGGGTCGACGGCGTCAGCCTTGAGAAGATT
CATTGATAACAGACACCGCCGAGGACTCAAAGGAATTCTACTGCCCGTTC
GAATTACCCCAGGATGAATACGGAGAATTGATGTTCGAACGGCGGCTGGC
GATGGAAGGAACCGCATCTCCTGATCCTAGCACGCATGCGGGTTCGAGGA
GGGGGAGCACGGTGGCTGATACGGACGGCATGCACAAGCACTTCCGTATG
ATCGCGATTTCGGAGTTCATGAAAAGCCAAGGCTATGCGCCCGCGCACGC
AGAACACACACGGATACCGGGGATATGGAAGAAGCTGGGGACATTATACA
ATCTTCCGGCTTTGGATGAGCGGATGCCCCCGCGCAAGAAAGCCAAACTT
ACCCCCCAAAGCGAGAATGCCGAGCCGTCCGCAAGCACCGCTGACCAGCC
AACAACCGCGGATTACGACCCAGTGACAGATCCCTGGACGGACGAGCAAG
AGACCGCGTTATTGAAGGGGATCATAAAATGGAAGCCTGTCGAACCTCGC
TCTTCCCCCGCGCCATCACGAGGACGGAAGTCAGGTCGTGGCGGGCGTCC
AGCGGGACGAGGGACGCGTTCGTCGCGTCTTCATGTCGAGGTCGAACCGC
CGGCGAAGGGATCCGGAGCTGCGGAGGAAGAAGCGGATTCTGGCGAGGAG
ACAGGCGCAAATGAAGAAGGCGATGAAGATGGTTCGGACGCTGCGAAGGA
TGATAGTGAGGTCGATGAGGAAGCGGAGGGGGGCTCGCCTACGACGCGAA
GTACGCGTGCCCAGACATCGAGGACGAAGCAGAAGGGCAGAGGTACAGCA
GGCACCGGAACCCGGAGGGGTCGACGGCGTCAGCCTTGAGAAGATTCATT
GATAACAGACACCGCCGAGGACTCAAAGGAATTCTACTGCCCGTTCGAAT
TACCCCAGGATGAATACGGAGAATTGATGTTCGAACGGCGGCTGGCGATG
GAAGGAACCGCATCTCCTGATCCTAGCACGCATGCGGGTTCGAGGAGGGG
GAGCACGGTGGCTGATACGGACGGCATGCACAAGCACTTCCGTATGATCG
CGATTTCGGAGTTCATGAAAAGCCAAGGCTATGCGCCCGCGCACGCAGAA
CACACACGGATACCGGGGATATGGAAGAAGCTGGGGACATTATACAATCT
TCCGGCTTTGGATGAGCGGATGCCCCCGCGCAAGAAAGCCAAACTTACCC
CCCAAAGCGAGAATGCCGAGCCGTCCGCAAGCACCGCTGACCAGCCAACA
ACCGCGGATTACGACCCAGTGACAGATCCCTGGACGGACGAGCAAGAGAC
CGCGTTATTGAAGGGGATCATAAAATGGAAGCCTGTCGAACCTCGCTCTT
CCCCCGCGCCATCACGAGGACGGAAGTCAGGTCGTGGCGGGCGTCCAGCG
GGACGAGGGACGCGTTCGTCGCGTCTTCATGTCGAGGTCGAACCGCCGGC
GAAGGGATCCGGAGCTGCGGAGGAAGAAGCGGATTCTGGCGAGGAGACAG
GCGCAAATGAAGAAGGCGATGAAGATGGTTCGGACGCTGCGAAGGATGAT
AGTGAGGTCGATGAGGAAGCGGAGGGGGGCTCGCCTACGACGCGAAGTAC
GCGTGCCCAGACATCGAGGACGAAGCAGAAGGGCAGAGGTACAGCAGGCA
CCGGAACCCGGAGGGGTCGACGGCGTCAGCCTTGAGAAGATTCATTGATA
ACAGACACCGCCGAGGACTCAAAGGAATTCTACTGCCCGTTCGAATTACC
CCAGGATGAATACGGAGAATTGATGTTCGAACGGCGGCTGGCGATGGAAG
GAACCGCATCTCCTGATCCTAGCACGCATGCGGGTTCGAGGAGGGGGAGC
ACGGTGGCTGATACGGACGGCATGCACAAGCACTTCCGTATGATCGCGAT
TTCGGAGTTCATGAAAAGCCAAGGCTATGCGCCCGCGCACGCAGAACACA
CACGGATACCGGGGATATGGAAGAAGCTGGGGACATTATACAATCTTCCG
GCTTTGGATGAGCGGATGCCCCCGCGCAAGAAAGCCAAACTTACCCCCCA
AAGCGAGAATGCCGAGCCGTCCGCAAGCACCGCTGACCAGCCAACAACCG
CGGATTACGACCCAGTGACAGATCCCTGGACGGACGAGCAAGAGACCGCG
TTATTGAAGGGGATCATAAAATGGAAGCCTGTCG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0043189H4/H2A histone acetyltransferase complex
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_012257KJC3_012257Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012257-T1KJC3_012257-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012257-T1.cdsKJC3_012257-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012257-T1.exon4KJC3_012257-T1.exon4Aspergillus niger KJC3exon
KJC3_012257-T1.exon3KJC3_012257-T1.exon3Aspergillus niger KJC3exon
KJC3_012257-T1.exon2KJC3_012257-T1.exon2Aspergillus niger KJC3exon
KJC3_012257-T1.exon1KJC3_012257-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012257-T1.utr5p1KJC3_012257-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR012423
DBxrefPFAM:PF07904
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:3032446..3033662 -
Powered by Drupal