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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:3160253..3162540+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012302-T1 ID=KJC3_012302-T1|Name=KJC3_012302-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2288bp|location=Sequence derived from alignment at ch8:3160253..3162540+ (Aspergillus niger KJC3) CTTTCTCTCTCGGTTTGATCTTCCCCACGGCATTCCCCTCAGCAATTCCA
ATTACTTGATCTCTTGCGGGTTTGTAATCACTTGCTGCAGCATTCTTCTT
GTCCCGAGCAGCAATCCCTCGGCCACGCCGGGTTGACCTTCGTCTCTTCC
CCGCCTTTGGAATCCATCCCACCGGCTGACCTTGCGCTCGTTCGAATCCG
TCGCTGGTCCAACCCGTTCCAGCCTCTCTTTGTCATTCCACTCGTGGTGT
GCATCCTGGTCCACCTTCGCTTCGAGGGGAAGAACTTGTTTCCTCAGGAG
ACTTGCGCCGCAATTACCTGTGCCCAACACACTACTTATTTCTTTTCTTC
TCTTCTCGTGTTGCGATTGACCGAGTTCTTACCAAAGCCTGCTTGCGGCC
GTGGTACGATCAGACCTACCTGCGGGCGGGGTAAGGCCATTTGCACACTC
ATCTCACCTATAAGCCCAGACCCTCTGCTCGGTTTACTACTCGGCACACT
CTCAGCTGATGCTGCTCTGGGCTAGTTATCATGCCTCTCGATGAAGAAGG
GGCCAAATGGTCTTGGTATGACTCTTTCCGCCGGTGAAGAGGCTCTCTGC
TAACCAGATCCTTCCACTAGTGAGCCATGTATCCGTGGCCATCGGTCCTC
GAAATGCCAGCACTTCGACAGGATGATGATGAAGGTCCCAAAGGCCGGAC
GACCGCTTGCTAGATGCCCTCATCCGAAGGGAACTTGCAGCTGCCAGAAA
CTATATGCGTTCATGATCCGCATCCCCAAAGGTGGGTAAATGCGACGGAT
ATGGCCTATCGTTTATCCTTCGGTTGTAGTCGCGTCTTTGGTGACTGACT
TCGACTGTGCCATGTAGGCTCGACTTGCTTGTGCAGACCAGTGTACCAAG
TGCCTGCTGATGCGGCGGAATCTGCTTCAACCACCCCGATTCCTGCTCCT
CCGATGCCGATTGCTGCTCCCAATAAAATCCAGAAACCCATCAAACGACA
AGTCAAGACGGCCCCAGAGAATCTTACCAAAGCCTTGAACTCCATACCAG
AATTCGGAAACCAGCAATTGGAACATGGAAAATTGGGCCGACCATCGCCT
TATACGGCTCAGGAACAACGTTTGAGCAGTTCATATGATATCATCAAGCA
AGAACCAACTCCCTCGCACAAGGCCTTCGAGCGCGCTAGCGAAGATAAGG
CGCCGCAGGGCGGCAGCTGTTGCTCTCGCAAGCCCCAGCCCTCACAGACT
ATAACTCCGGAGGTTCAAGCTCCCGCGGTTCAACGTTCCTGTTGTAGCAA
GTCCAAGCCGGCGGCTCAAGACGTCGAGATGGAAGGCAGCATTCTTAACA
GTTCTGATTACTTCCACCCTCCAGTCTTTGACAGCGATAACGCAAGATAC
ACCCCGAATTCTATTCCTCAAGTTTCGACATGGCAGGATTTCCAAGCAGC
GAAGCAGAGCCAGTACATGCAGCCTTTTGCATTGCCCGTATCCGAGTCCG
GTTATCTTCCCATGGCCGGACCTGCCGCAGATATTCGTCCTAAGCCACTA
GACTTTCAGCATCCGCCTGCTTTCAACAACTATGATCTCTTCAGCAACCA
GACTTCTCAGCAACCGTCGGAGAATACGCAGAATGTCGTTGCAGATCCAG
AAAGTACTGCTAGCGATGACGCCCATGACTGTAGCTGTGGCGATGGTTGT
CAATGTCTGGGCTGCGCGTCTCACCCGTTCAACAACACTACACGACAGCA
TGTCCAACAAATGGGCCTCCTGGTGGCCCTGAATGATGATGAGCAAAGCC
CCGAAAGGCTGAACAGTCATAGAGGCTCCCCTCTGCAAAGTCAACCACCA
GACTTCTCATCATTACAATATTCCCTCACAAACTTCGGAAATCCTCTGGG
TGAAGGCTTTCACCCTGTTGCAATGCACCCATATGCCCAACAGGGTACGG
ATCCAAGTCACGTAAATAATGGCTATTCTTCTCCACCTGCGGATTATCTA
GGACAGCAGCTCATGGTGCCGTCAGAGTACTATACTCTCGAGTACTCAGT
GGGGCTGCCTAGTGCTTGCGTCGATACAACTGGAAGTTGCCAGTGCGGGA
ATGACTGTACCTGTGTTGGCTGTCTCACCCACAGCGGACACAATGGACTG
CCTCTTGAGCCCGCCATGCCCGAGAGCAACTGGGACCACATGAATCTTCC
AGGTTTCTCCATGGACGCCGCTGGGCACAGCCCGTCGCAGATGCCCGTGA
TGGATAACTTTGTCGCTCATTCGAACTCTATGCTGTAG back to topCoding sequence (CDS) from alignment at ch8:3160253..3162540+ >KJC3_012302-T1 ID=KJC3_012302-T1|Name=KJC3_012302-T1|organism=Aspergillus niger KJC3|type=CDS|length=4851bp|location=Sequence derived from alignment at ch8:3160253..3162540+ (Aspergillus niger KJC3) ATGCCTCTCGATGAAGAAGGGGCCAAATGGTCTTGTGAGCCATGTATCCG TGGCCATCGGTCCTCGAAATGCCAGCACTTCGACAGGATGATGATGAAGG TCCCAAAGGCCGGACGACCGCTTGCTAGATGCCCTCATCCGAAGGGAACT TGCAGCTGCCAGAAACTATATGCGTTCATGATCCGCATCCCCAAAGGCTC GACTTGCTTGTGCAGACCAGTGTACCAAGTGCCTGCTGATGCGGCGGAAT CTGCTTCAACCACCCCGATTCCTGCTCCTCCGATGCCGATTGCTGCTCCC AATAAAATCCAGAAACCCATCAAACGACAAGTCAAGACGGCCCCAGAGAA TCTTACCAAAGCCTTGAACTCCATACCAGAATTCGGAAACCAGCAATTGG AACATGGAAAATTGGGCCGACCATCGCCTTATACGGCTCAGGAACAACGT TTGAGCAGTTCATATGATATCATCAAGCAAGAACCAACTCCCTCGCACAA GGCCTTCGAGCGCGCTAGCGAAGATAAGGCGCCGCAGGGCGGCAGCTGTT GCTCTCGCAAGCCCCAGCCCTCACAGACTATAACTCCGGAGGTTCAAGCT CCCGCGGTTCAACGTTCCTGTTGTAGCAAGTCCAAGCCGGCGGCTCAAGA CGTCGAGATGGAAGGCAGCATTCTTAACAGTTCTGATTACTTCCACCCTC CAGTCTTTGACAGCGATAACGCAAGATACACCCCGAATTCTATTCCTCAA GTTTCGACATGGCAGGATTTCCAAGCAGCGAAGCAGAGCCAGTACATGCA GCCTTTTGCATTGCCCGTATCCGAGTCCGGTTATCTTCCCATGGCCGGAC CTGCCGCAGATATTCGTCCTAAGCCACTAGACTTTCAGCATCCGCCTGCT TTCAACAACTATGATCTCTTCAGCAACCAGACTTCTCAGCAACCGTCGGA GAATACGCAGAATGTCGTTGCAGATCCAGAAAGTACTGCTAGCGATGACG CCCATGACTGTAGCTGTGGCGATGGTTGTCAATGTCTGGGCTGCGCGTCT CACCCGTTCAACAACACTACACGACAGCATGTCCAACAAATGGGCCTCCT GGTGGCCCTGAATGATGATGAGCAAAGCCCCGAAAGGCTGAACAGTCATA GAGGCTCCCCTCTGCAAAGTCAACCACCAGACTTCTCATCATTACAATAT TCCCTCACAAACTTCGGAAATCCTCTGGGTGAAGGCTTTCACCCTGTTGC AATGCACCCATATGCCCAACAGGGTACGGATCCAAGTCACGTAAATAATG GCTATTCTTCTCCACCTGCGGATTATCTAGGACAGCAGCTCATGGTGCCG TCAGAGTACTATACTCTCGAGTACTCAGTGGGGCTGCCTAGTGCTTGCGT CGATACAACTGGAAGTTGCCAGTGCGGGAATGACTGTACCTGTGTTGGCT GTCTCACCCACAGCGGACACAATGGACTGCCTCTTGAGCCCGCCATGCCC GAGAGCAACTGGGACCACATGAATCTTCCAGGTTTCTCCATGGACGCCGC TGGGCACAGCCCGTCGCAGATGCCCGTGATGGATAACTTTGTCGCTCATT CGAACTCTATGCTGTAGATGCCTCTCGATGAAGAAGGGGCCAAATGGTCT TGTGAGCCATGTATCCGTGGCCATCGGTCCTCGAAATGCCAGCACTTCGA CAGGATGATGATGAAGGTCCCAAAGGCCGGACGACCGCTTGCTAGATGCC CTCATCCGAAGGGAACTTGCAGCTGCCAGAAACTATATGCGTTCATGATC CGCATCCCCAAAGGCTCGACTTGCTTGTGCAGACCAGTGTACCAAGTGCC TGCTGATGCGGCGGAATCTGCTTCAACCACCCCGATTCCTGCTCCTCCGA TGCCGATTGCTGCTCCCAATAAAATCCAGAAACCCATCAAACGACAAGTC AAGACGGCCCCAGAGAATCTTACCAAAGCCTTGAACTCCATACCAGAATT CGGAAACCAGCAATTGGAACATGGAAAATTGGGCCGACCATCGCCTTATA CGGCTCAGGAACAACGTTTGAGCAGTTCATATGATATCATCAAGCAAGAA CCAACTCCCTCGCACAAGGCCTTCGAGCGCGCTAGCGAAGATAAGGCGCC GCAGGGCGGCAGCTGTTGCTCTCGCAAGCCCCAGCCCTCACAGACTATAA CTCCGGAGGTTCAAGCTCCCGCGGTTCAACGTTCCTGTTGTAGCAAGTCC AAGCCGGCGGCTCAAGACGTCGAGATGGAAGGCAGCATTCTTAACAGTTC TGATTACTTCCACCCTCCAGTCTTTGACAGCGATAACGCAAGATACACCC CGAATTCTATTCCTCAAGTTTCGACATGGCAGGATTTCCAAGCAGCGAAG CAGAGCCAGTACATGCAGCCTTTTGCATTGCCCGTATCCGAGTCCGGTTA TCTTCCCATGGCCGGACCTGCCGCAGATATTCGTCCTAAGCCACTAGACT TTCAGCATCCGCCTGCTTTCAACAACTATGATCTCTTCAGCAACCAGACT TCTCAGCAACCGTCGGAGAATACGCAGAATGTCGTTGCAGATCCAGAAAG TACTGCTAGCGATGACGCCCATGACTGTAGCTGTGGCGATGGTTGTCAAT GTCTGGGCTGCGCGTCTCACCCGTTCAACAACACTACACGACAGCATGTC CAACAAATGGGCCTCCTGGTGGCCCTGAATGATGATGAGCAAAGCCCCGA AAGGCTGAACAGTCATAGAGGCTCCCCTCTGCAAAGTCAACCACCAGACT TCTCATCATTACAATATTCCCTCACAAACTTCGGAAATCCTCTGGGTGAA GGCTTTCACCCTGTTGCAATGCACCCATATGCCCAACAGGGTACGGATCC AAGTCACGTAAATAATGGCTATTCTTCTCCACCTGCGGATTATCTAGGAC AGCAGCTCATGGTGCCGTCAGAGTACTATACTCTCGAGTACTCAGTGGGG CTGCCTAGTGCTTGCGTCGATACAACTGGAAGTTGCCAGTGCGGGAATGA CTGTACCTGTGTTGGCTGTCTCACCCACAGCGGACACAATGGACTGCCTC TTGAGCCCGCCATGCCCGAGAGCAACTGGGACCACATGAATCTTCCAGGT TTCTCCATGGACGCCGCTGGGCACAGCCCGTCGCAGATGCCCGTGATGGA TAACTTTGTCGCTCATTCGAACTCTATGCTGTAGATGCCTCTCGATGAAG AAGGGGCCAAATGGTCTTGTGAGCCATGTATCCGTGGCCATCGGTCCTCG AAATGCCAGCACTTCGACAGGATGATGATGAAGGTCCCAAAGGCCGGACG ACCGCTTGCTAGATGCCCTCATCCGAAGGGAACTTGCAGCTGCCAGAAAC TATATGCGTTCATGATCCGCATCCCCAAAGGCTCGACTTGCTTGTGCAGA CCAGTGTACCAAGTGCCTGCTGATGCGGCGGAATCTGCTTCAACCACCCC GATTCCTGCTCCTCCGATGCCGATTGCTGCTCCCAATAAAATCCAGAAAC CCATCAAACGACAAGTCAAGACGGCCCCAGAGAATCTTACCAAAGCCTTG AACTCCATACCAGAATTCGGAAACCAGCAATTGGAACATGGAAAATTGGG CCGACCATCGCCTTATACGGCTCAGGAACAACGTTTGAGCAGTTCATATG ATATCATCAAGCAAGAACCAACTCCCTCGCACAAGGCCTTCGAGCGCGCT AGCGAAGATAAGGCGCCGCAGGGCGGCAGCTGTTGCTCTCGCAAGCCCCA GCCCTCACAGACTATAACTCCGGAGGTTCAAGCTCCCGCGGTTCAACGTT CCTGTTGTAGCAAGTCCAAGCCGGCGGCTCAAGACGTCGAGATGGAAGGC AGCATTCTTAACAGTTCTGATTACTTCCACCCTCCAGTCTTTGACAGCGA TAACGCAAGATACACCCCGAATTCTATTCCTCAAGTTTCGACATGGCAGG ATTTCCAAGCAGCGAAGCAGAGCCAGTACATGCAGCCTTTTGCATTGCCC GTATCCGAGTCCGGTTATCTTCCCATGGCCGGACCTGCCGCAGATATTCG TCCTAAGCCACTAGACTTTCAGCATCCGCCTGCTTTCAACAACTATGATC TCTTCAGCAACCAGACTTCTCAGCAACCGTCGGAGAATACGCAGAATGTC GTTGCAGATCCAGAAAGTACTGCTAGCGATGACGCCCATGACTGTAGCTG TGGCGATGGTTGTCAATGTCTGGGCTGCGCGTCTCACCCGTTCAACAACA CTACACGACAGCATGTCCAACAAATGGGCCTCCTGGTGGCCCTGAATGAT GATGAGCAAAGCCCCGAAAGGCTGAACAGTCATAGAGGCTCCCCTCTGCA AAGTCAACCACCAGACTTCTCATCATTACAATATTCCCTCACAAACTTCG GAAATCCTCTGGGTGAAGGCTTTCACCCTGTTGCAATGCACCCATATGCC CAACAGGGTACGGATCCAAGTCACGTAAATAATGGCTATTCTTCTCCACC TGCGGATTATCTAGGACAGCAGCTCATGGTGCCGTCAGAGTACTATACTC TCGAGTACTCAGTGGGGCTGCCTAGTGCTTGCGTCGATACAACTGGAAGT TGCCAGTGCGGGAATGACTGTACCTGTGTTGGCTGTCTCACCCACAGCGG ACACAATGGACTGCCTCTTGAGCCCGCCATGCCCGAGAGCAACTGGGACC ACATGAATCTTCCAGGTTTCTCCATGGACGCCGCTGGGCACAGCCCGTCG CAGATGCCCGTGATGGATAACTTTGTCGCTCATTCGAACTCTATGCTGTA G back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
Term | Definition |
GO:0005634 | nucleus |
GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
Term | Definition |
GO:0003677 | DNA binding |
GO:0005507 | copper ion binding |
GO:0003700 | DNA-binding transcription factor activity |
Vocabulary: Biological Process
Term | Definition |
GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_012302-T1.utr5p1 | KJC3_012302-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
Property Name | Value |
DBxref | InterPro:IPR036395 |
DBxref | InterPro:IPR001083 |
DBxref | PFAM:PF00649 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch8 | supercontig | ch8:3160253..3162540 + |
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