You are here

Home

KJC3_012362-T1, KJC3_012362-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012362-T1
Unique NameKJC3_012362-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:3350637..3351583+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012362-T1 ID=KJC3_012362-T1|Name=KJC3_012362-T1|organism=Aspergillus niger KJC3|type=mRNA|length=947bp|location=Sequence derived from alignment at ch8:3350637..3351583+ (Aspergillus niger KJC3)
CCTTATCTATCAACCTCCATCAATCTTTCATCCTCAACGTCATCTTTCCA
TCTCTAAAACAACTAAATCCATCAAACTTAATCCACTAAGATGGCCCGCA
CTAAGCAGACTGCCCGTAAGTGCAACCTCACTGTCCTTTCCCCTCGTGTC
GTTCGACCGCGTCATGGTCGCGACACCCGTGTCTCACATGAGGAACATCA
TCACTAACTATCATCTCAATATAGGTAAGTCCACTGGTGGCAAGGCTCCC
CGTAAGCAGCTCGCCTCCAAGGCTGCCCGTAAGGCCGCTCCCTCCACCGG
AGGTGTCAAGAAGCCTCACCGTTACAAGCCCGGTATGTATACACTCATCA
TTCAAAGTGGCAAATGGCCTATCCGAACAGTCAACTAACAGTCTACCAAA
GGTACCGTCGCTCTGCGTGAAATCCGTCGTTACCAGAAGAGCACTGAGCT
CCTGATCCGCAAGCTGCCCTTCCAGCGTCTTGTCCGTGAAATTGCTCAGG
ACTTCAAGTCGGATCTCCGCTTCCAGTCCTCCGCCATCGGTGCTCTTCAG
GAGTCCGTCGAGGCCTACCTCGTCTCCCTCTTCGAGGACACCAACCTGTG
CGCCATCCACGCCAAGCGTGTCACCATCCAGTCCAAGGACATCCAGCTTG
CCCGCCGTCTCCGTGGTGAGCGCTCTTAGATTTACTTCTAATGAGTCGAT
TCTTTTTCTGGTTGGGAAGGCGATAACGGGGTTTCTTTTTCTTTAATTTT
CATGACTACTGGCGATACATGATGGGTTTGCGAATTTTAACGGGTTTCGG
CACTGGGTTTTCGTTATTTCTTGCTGCGCAATAAATAGTAGCTGCCGATT
CAGCGGCTGGGTGGAATTGATCATGGGGATGCATCCGAATATGTACATTA
AAGAAAGCTTTTATTCGACGTGACTTCCTTCGGGAGCGCCACCGGAT
back to top

Coding sequence (CDS) from alignment at ch8:3350637..3351583+

>KJC3_012362-T1 ID=KJC3_012362-T1|Name=KJC3_012362-T1|organism=Aspergillus niger KJC3|type=CDS|length=1233bp|location=Sequence derived from alignment at ch8:3350637..3351583+ (Aspergillus niger KJC3)
ATGGCCCGCACTAAGCAGACTGCCCGTAAGTCCACTGGTGGCAAGGCTCC
CCGTAAGCAGCTCGCCTCCAAGGCTGCCCGTAAGGCCGCTCCCTCCACCG
GAGGTGTCAAGAAGCCTCACCGTTACAAGCCCGGTACCGTCGCTCTGCGT
GAAATCCGTCGTTACCAGAAGAGCACTGAGCTCCTGATCCGCAAGCTGCC
CTTCCAGCGTCTTGTCCGTGAAATTGCTCAGGACTTCAAGTCGGATCTCC
GCTTCCAGTCCTCCGCCATCGGTGCTCTTCAGGAGTCCGTCGAGGCCTAC
CTCGTCTCCCTCTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCG
TGTCACCATCCAGTCCAAGGACATCCAGCTTGCCCGCCGTCTCCGTGGTG
AGCGCTCTTAGATGGCCCGCACTAAGCAGACTGCCCGTAAGTCCACTGGT
GGCAAGGCTCCCCGTAAGCAGCTCGCCTCCAAGGCTGCCCGTAAGGCCGC
TCCCTCCACCGGAGGTGTCAAGAAGCCTCACCGTTACAAGCCCGGTACCG
TCGCTCTGCGTGAAATCCGTCGTTACCAGAAGAGCACTGAGCTCCTGATC
CGCAAGCTGCCCTTCCAGCGTCTTGTCCGTGAAATTGCTCAGGACTTCAA
GTCGGATCTCCGCTTCCAGTCCTCCGCCATCGGTGCTCTTCAGGAGTCCG
TCGAGGCCTACCTCGTCTCCCTCTTCGAGGACACCAACCTGTGCGCCATC
CACGCCAAGCGTGTCACCATCCAGTCCAAGGACATCCAGCTTGCCCGCCG
TCTCCGTGGTGAGCGCTCTTAGATGGCCCGCACTAAGCAGACTGCCCGTA
AGTCCACTGGTGGCAAGGCTCCCCGTAAGCAGCTCGCCTCCAAGGCTGCC
CGTAAGGCCGCTCCCTCCACCGGAGGTGTCAAGAAGCCTCACCGTTACAA
GCCCGGTACCGTCGCTCTGCGTGAAATCCGTCGTTACCAGAAGAGCACTG
AGCTCCTGATCCGCAAGCTGCCCTTCCAGCGTCTTGTCCGTGAAATTGCT
CAGGACTTCAAGTCGGATCTCCGCTTCCAGTCCTCCGCCATCGGTGCTCT
TCAGGAGTCCGTCGAGGCCTACCTCGTCTCCCTCTTCGAGGACACCAACC
TGTGCGCCATCCACGCCAAGCGTGTCACCATCCAGTCCAAGGACATCCAG
CTTGCCCGCCGTCTCCGTGGTGAGCGCTCTTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
HHT1KJC3_012362Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012362-T1KJC3_012362-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012362-T1.utr5p1KJC3_012362-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012362-T1.exon1KJC3_012362-T1.exon1Aspergillus niger KJC3exon
KJC3_012362-T1.exon2KJC3_012362-T1.exon2Aspergillus niger KJC3exon
KJC3_012362-T1.exon3KJC3_012362-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012362-T1.cdsKJC3_012362-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012362-T1.utr3p1KJC3_012362-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR009072
DBxrefInterPro:IPR007125
DBxrefInterPro:IPR000164
DBxrefPFAM:PF00125
Producthistone H3.1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:3350637..3351583 +
Powered by Drupal