|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:3367373..3369376+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012368-T1 ID=KJC3_012368-T1|Name=KJC3_012368-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2004bp|location=Sequence derived from alignment at ch8:3367373..3369376+ (Aspergillus niger KJC3)
ATGAGTGATAATCAGTTCCCTGCTCAGCCTCTGGGCTCTTCAGAAGTCCC
CAATGAGGGTCCTCCTGTCAAGAGACCCTGCACCATCGATACGCCACCGA
TTGCGTTGACGCCAGCCGACGATGGAAGCGACTTCTACAATACACCCTTG
GCTGTCGGCACACCCGCGGACAGTAGCGCTGTGAAAGACCAGGTTGATGG
CGCTCAGAACCCGACCAGTGAGCCGGATGCCGCTGCACACGTCCATCCAC
CTATTCCAGGATTGAATTTGGTCAATGATAACGTCCAAGATCTTCAACAA
CCACAGGCAACTGAGGCTACTGTATCACAGACGACCACAAATGTGAACAG
CGAGCAAAACGGTGCTGTATCTACCAACCAGTCTGTTCCCGCCCAGGGTG
AACCCGAGAAGATGGAGGAAACTAAGGCAGAGCCCACTACCGATGCTATG
GATGTGGATGCCAATGAGAAGCAGGAGCCCCAACAACCAGCGGAGGCACC
TGCCACTAATGGCGCAGAAGCTGCTCAGGACGAAGAAGATGACGAGCACC
CCGAGTGGGAAATTGATTCATCTCCCTACGAATCCTCTTCCGACGACTCC
TCCACAGACTCTTCCGATGACAGCGACGATGACGACGAAGACTACCCCAT
CCTGAGCCCCGAAGAACAAGCACGGATTTTGATGCAGGCGGAGCTTGGCT
CTGACGACGAAGGTGATGGAAAAGGCAAGACCGGCGGCCATCTGAGGACG
GCAAACGAAATGCCCGAAGAAGCACCTCCCATCCCTGAGGTTACCATCAC
ACCGGAGATGAAAATTGTGCATCTGGGTCAGGTGGAGGCGATCGTTGAGA
ACACCCTCCTTATTACTGCCAACACCAGCGGGGAGTACCAAGTGCTCGAA
GCCGGCTCCCTACTCTGTTTGGAGAACCGCAGTGTCGCCGGTGTGGTCTC
TGAGACTCTCGGAAGGGTCGAGAACCCTCTGTATGCCGTTCGGTACCCGA
CCGCGGCTGACATCGCCGAGCGTGGCTTGTCCAAGGGCACGAATGTCTAC
TACGTCGAGGAACACTCCACCTTCGTCTTCACTCAACCTCTCAAGGGCCT
GAAGGGAAGTGATGCCTCTAACTTCCACGACGAAGAGATTGCCGAGGATG
AAGTCGAGTTCTCCGACGACGAAGCCGAAGCAGAGTATAAGCGCAAGCTT
AAACAGAAGCGCCAGGAAAAGAAGGAGTCACGGAACGAAAACGGCCCAGC
AAGAGGCAGAAGGAACCCCCCGGGACCCTCCAAGCTCGGCCAAAGCGAAT
TGAACTACGACGACAACCCCGTCGACGACGGCTACACTCCGCTCGCCCGG
CCTAAGAACCTGCACGAGATGATGCGCCAACAGGAAGCCCCCGTTGAAGC
CGACGGCCACTCCGGCCCCAGCAGAAACAACTCCGGCTTCCGCGGTGGTG
GACGCGGTCGTGGCCGAGGATATGATCGTGGAGGTCGCGGTGGTGGTGGC
CGCGGTGGCCGCCCCTCCCACGATTCGGCTCCTCATCATCAAGATCGTCA
ACAGTCATACTACCAGCCCCAAGCGCAGGCCTCTCATCAGTCTCAACCTC
AAAGCCACCCCTACCCTCAAGCAGCGTACCCCACGAACCCGCAGGGTGCA
TACGCTCTCCCTCAGCAGTTCCCTCCCTTCGCAGCTTTCCAGCCGCAACA
ACCCCAGGCATACGGACAAGGTGCCATGCCAACAGCACCTTTCAATTTCC
AGATGCCCTTCCAACAGGCCTATCAACAACCAAACCCGTACCAGCAGCTT
CCTGCTAACGTGCACATCAACCCCTTGTTCTTGGCTGCCCTTCAGCAACA
ACAGCAGCAGCAGCAACAACAACAACAAGTACCAGGACAACCCCAACAAC
CCCAGCAACCGACGATGAACTTCGACCAAGTAAAAGCACAGTTGGATCTT
CTACGGCAATTAAGTAACAACCAGAACCAGAACCAGGGGCCTCCTCGGTC
GTGA back to topCoding sequence (CDS) from alignment at ch8:3367373..3369376+ >KJC3_012368-T1 ID=KJC3_012368-T1|Name=KJC3_012368-T1|organism=Aspergillus niger KJC3|type=CDS|length=2004bp|location=Sequence derived from alignment at ch8:3367373..3369376+ (Aspergillus niger KJC3)
ATGAGTGATAATCAGTTCCCTGCTCAGCCTCTGGGCTCTTCAGAAGTCCC
CAATGAGGGTCCTCCTGTCAAGAGACCCTGCACCATCGATACGCCACCGA
TTGCGTTGACGCCAGCCGACGATGGAAGCGACTTCTACAATACACCCTTG
GCTGTCGGCACACCCGCGGACAGTAGCGCTGTGAAAGACCAGGTTGATGG
CGCTCAGAACCCGACCAGTGAGCCGGATGCCGCTGCACACGTCCATCCAC
CTATTCCAGGATTGAATTTGGTCAATGATAACGTCCAAGATCTTCAACAA
CCACAGGCAACTGAGGCTACTGTATCACAGACGACCACAAATGTGAACAG
CGAGCAAAACGGTGCTGTATCTACCAACCAGTCTGTTCCCGCCCAGGGTG
AACCCGAGAAGATGGAGGAAACTAAGGCAGAGCCCACTACCGATGCTATG
GATGTGGATGCCAATGAGAAGCAGGAGCCCCAACAACCAGCGGAGGCACC
TGCCACTAATGGCGCAGAAGCTGCTCAGGACGAAGAAGATGACGAGCACC
CCGAGTGGGAAATTGATTCATCTCCCTACGAATCCTCTTCCGACGACTCC
TCCACAGACTCTTCCGATGACAGCGACGATGACGACGAAGACTACCCCAT
CCTGAGCCCCGAAGAACAAGCACGGATTTTGATGCAGGCGGAGCTTGGCT
CTGACGACGAAGGTGATGGAAAAGGCAAGACCGGCGGCCATCTGAGGACG
GCAAACGAAATGCCCGAAGAAGCACCTCCCATCCCTGAGGTTACCATCAC
ACCGGAGATGAAAATTGTGCATCTGGGTCAGGTGGAGGCGATCGTTGAGA
ACACCCTCCTTATTACTGCCAACACCAGCGGGGAGTACCAAGTGCTCGAA
GCCGGCTCCCTACTCTGTTTGGAGAACCGCAGTGTCGCCGGTGTGGTCTC
TGAGACTCTCGGAAGGGTCGAGAACCCTCTGTATGCCGTTCGGTACCCGA
CCGCGGCTGACATCGCCGAGCGTGGCTTGTCCAAGGGCACGAATGTCTAC
TACGTCGAGGAACACTCCACCTTCGTCTTCACTCAACCTCTCAAGGGCCT
GAAGGGAAGTGATGCCTCTAACTTCCACGACGAAGAGATTGCCGAGGATG
AAGTCGAGTTCTCCGACGACGAAGCCGAAGCAGAGTATAAGCGCAAGCTT
AAACAGAAGCGCCAGGAAAAGAAGGAGTCACGGAACGAAAACGGCCCAGC
AAGAGGCAGAAGGAACCCCCCGGGACCCTCCAAGCTCGGCCAAAGCGAAT
TGAACTACGACGACAACCCCGTCGACGACGGCTACACTCCGCTCGCCCGG
CCTAAGAACCTGCACGAGATGATGCGCCAACAGGAAGCCCCCGTTGAAGC
CGACGGCCACTCCGGCCCCAGCAGAAACAACTCCGGCTTCCGCGGTGGTG
GACGCGGTCGTGGCCGAGGATATGATCGTGGAGGTCGCGGTGGTGGTGGC
CGCGGTGGCCGCCCCTCCCACGATTCGGCTCCTCATCATCAAGATCGTCA
ACAGTCATACTACCAGCCCCAAGCGCAGGCCTCTCATCAGTCTCAACCTC
AAAGCCACCCCTACCCTCAAGCAGCGTACCCCACGAACCCGCAGGGTGCA
TACGCTCTCCCTCAGCAGTTCCCTCCCTTCGCAGCTTTCCAGCCGCAACA
ACCCCAGGCATACGGACAAGGTGCCATGCCAACAGCACCTTTCAATTTCC
AGATGCCCTTCCAACAGGCCTATCAACAACCAAACCCGTACCAGCAGCTT
CCTGCTAACGTGCACATCAACCCCTTGTTCTTGGCTGCCCTTCAGCAACA
ACAGCAGCAGCAGCAACAACAACAACAAGTACCAGGACAACCCCAACAAC
CCCAGCAACCGACGATGAACTTCGACCAAGTAAAAGCACAGTTGGATCTT
CTACGGCAATTAAGTAACAACCAGAACCAGAACCAGGGGCCTCCTCGGTC
GTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0042254 | ribosome biogenesis |
| GO:0001522 | pseudouridine synthesis |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09263G4R |
| DBxref | InterPro:IPR009000 |
| DBxref | InterPro:IPR038664 |
| DBxref | InterPro:IPR007504 |
| DBxref | PFAM:PF04410 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:3367373..3369376 + |
|
