You are here

Home

KJC3_012446-T1, KJC3_012446-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012446-T1
Unique NameKJC3_012446-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:3598522..3600726-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012446-T1 ID=KJC3_012446-T1|Name=KJC3_012446-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2205bp|location=Sequence derived from alignment at ch8:3598522..3600726- (Aspergillus niger KJC3)
GAGGACTCCAGTTGGCACTTAACTCGTTATCAGCCGTGCTGCTCCTCCTC
CTCATGGTGTTTGGACCCTGCAGGTCTATGAATTCAAGATATAGCAATCC
GATAAACCACGGCAAGACTCAAGTATAAAGTAGAGGCTTGCGTCCAGAGT
GTGCGTGACCGATTCCCTTAGCGAGAAACCTGGTTTGCTCCTTTTATTGT
ATCGTTGATTCTAATCTAGTCATGTCTTTAGAGAGAGATAGAAAAAACTT
AGGGGTTCCGGATGATGAGGTCGTCAAACAGTTACCTAGTAACGTTGAAG
AGACTGGCATTGAACAAACCAATGATGCAGAAAGGTCCCTGGCTCACGCC
AGATTCGAGCATAGCCTTGGATTCTGGAAGGCGTGTCAGTTCTACCGTCC
AGCCCTGTTCTGGTCTTGCTTCGTCAACCTAGCCGTCATTCTGTGTGGCT
TTGATGGCGCCTTGATTGGGAGTCTGGTAGGGTTGACCCCATTTGTTCGC
ACATATGGAAGATGGGTGGACGGGCAATATGCGGTTGCTCCCTCTTGGCT
GTCTGCCTTCAATTATGCGTCATACGTGGGCAGTGTGCCTGGCTCGCTGG
TGGCAGGCATCGCCTACGACAAGTATGGTCCGCGCATGACCCTCGCTGCG
GCTTCGATCGGCTCGATCGGGTCCATCTTCTTTCAGTTCTTTAGTGAAGG
CCCAGCTCTTCTCTTCGTTGGCGAGCTACTCAACGGATTCATCACAGGTG
TCTACCCTGTCCTCGCCAATGCTTATGTTAGTGAAGTTGCACCTGTTGCT
GCTCGCGGTGTCCTTGCTGCCGTCATAAACCTGTCCTATGTCATTGGTCA
ACTAGTGGCATCAGGACTGCTCAAGGGCACCAGTACGATGGATAGCAAGT
GGGCCTATAAGATCCCATTCGCCTCACAATGGGCTCTACCTGTCTTCATC
CTTTCGCTCATATACTTCTGCCCAACTCCTCCATACTGGCTCTGCAAGAA
AGGCCGACCAGAGCAAGCGCGGAAATCCATTCAGCGTCTGACGACATCCG
CAGTTGATGTGGACGCGTACCTCGCTCACATCCAAGAGACACTCCGCTTA
GAGGAAAGCTCTAGGACCAAGCCCAGCATTACCGACTGCTTTCGCGGTAC
AAACCTACGGCGCACTATTATCTCCTGTCAGGCTTTCAACATCCAAGCCC
TCTGTGGTAATATCTTATTCATAAACTATGCCGTTTACTTCTTTGAAATT
GCTGGTCTAGATACGTCGGACGCTTTCTCAATGAACGTGGGCCTGACATG
CATGGGCTTCGTTGGGACGCTAGCCTCCTACATTCTCATCTCATACGCCG
GTCGGCGCACCATCTATCTGTGGGGCTCTACCGTGATCGCCTTGCTACTC
CTTCTCGTCGGGATTTTGGCTGCAGTGCCCCAACACAATTCAGGGCCTGC
ATGGGCCATGTCCGCCCTCATGGTGGTATGCAACCTCATCTACGACATGT
CGGTGGGACCATTGTGCTTCACCGTCATGTCCGAGGTTTCTGCCGTTAAC
CTGAGAGGTGTCACTATAGCCCTGTCCAATGTCACTGTTGTGGTATGGTC
TGTCATATTTGCTGTCGCCATTCCCTATGCACTGGACACTACCGGCTCCA
ACTGGGGCGGCAAACTGGGATTCCTATTTGCTGGCATCGGTGTCTTGGAC
ACACTTTGGTGTTACTTCTTTCTGCCAGAGACTAAAGGCCGAACGTTTGA
GGAACTGGATTTCATGTTCCAGCAGAAGCTACCCACGCGTCAATTTGGCA
AGTATCAGTTTACGGAAACACAGCAGATAGCGCCAGAGGCTTAGCCTGTT
GCTGCAACACAGGCCAGAGAATTATTATTACAAGGCAAGCTTTTATCTAA
TATTTGTGCATATTTGGATCTTGATTCTATGTCTCCTTTTGGTTCATCCA
TTGACTAACCGTCTCTTGTAGAGTAATCATAGTTGAGTCAATAATACTAG
CTTTTTCTCGGTTACACTTGGTCTATCTTCGCCGCTGAACTGGTCGTTAT
CATTTTAAAGGAACAGGGAATATCTTGGTTCACGTGCTGCAAAGGTGCCC
GGTACAATGCGTGCCCACGAATGAGCTTCATGTACCTGTTTCGTTTTATA
TTTTCTACTTCACCCAGTAAACTGTTCAAGAGAAACGTATGGAGAGCATC
AGCCA
back to top

Coding sequence (CDS) from alignment at ch8:3598522..3600726-

>KJC3_012446-T1 ID=KJC3_012446-T1|Name=KJC3_012446-T1|organism=Aspergillus niger KJC3|type=CDS|length=1209bp|location=Sequence derived from alignment at ch8:3598522..3600726- (Aspergillus niger KJC3)
ATGACCCTCGCTGCGGCTTCGATCGGCTCGATCGGGTCCATCTTCTTTCA
GTTCTTTAGTGAAGGCCCAGCTCTTCTCTTCGTTGGCGAGCTACTCAACG
GATTCATCACAGGTGTCTACCCTGTCCTCGCCAATGCTTATGTTAGTGAA
GTTGCACCTGTTGCTGCTCGCGGTGTCCTTGCTGCCGTCATAAACCTGTC
CTATGTCATTGGTCAACTAGTGGCATCAGGACTGCTCAAGGGCACCAGTA
CGATGGATAGCAAGTGGGCCTATAAGATCCCATTCGCCTCACAATGGGCT
CTACCTGTCTTCATCCTTTCGCTCATATACTTCTGCCCAACTCCTCCATA
CTGGCTCTGCAAGAAAGGCCGACCAGAGCAAGCGCGGAAATCCATTCAGC
GTCTGACGACATCCGCAGTTGATGTGGACGCGTACCTCGCTCACATCCAA
GAGACACTCCGCTTAGAGGAAAGCTCTAGGACCAAGCCCAGCATTACCGA
CTGCTTTCGCGGTACAAACCTACGGCGCACTATTATCTCCTGTCAGGCTT
TCAACATCCAAGCCCTCTGTGGTAATATCTTATTCATAAACTATGCCGTT
TACTTCTTTGAAATTGCTGGTCTAGATACGTCGGACGCTTTCTCAATGAA
CGTGGGCCTGACATGCATGGGCTTCGTTGGGACGCTAGCCTCCTACATTC
TCATCTCATACGCCGGTCGGCGCACCATCTATCTGTGGGGCTCTACCGTG
ATCGCCTTGCTACTCCTTCTCGTCGGGATTTTGGCTGCAGTGCCCCAACA
CAATTCAGGGCCTGCATGGGCCATGTCCGCCCTCATGGTGGTATGCAACC
TCATCTACGACATGTCGGTGGGACCATTGTGCTTCACCGTCATGTCCGAG
GTTTCTGCCGTTAACCTGAGAGGTGTCACTATAGCCCTGTCCAATGTCAC
TGTTGTGGTATGGTCTGTCATATTTGCTGTCGCCATTCCCTATGCACTGG
ACACTACCGGCTCCAACTGGGGCGGCAAACTGGGATTCCTATTTGCTGGC
ATCGGTGTCTTGGACACACTTTGGTGTTACTTCTTTCTGCCAGAGACTAA
AGGCCGAACGTTTGAGGAACTGGATTTCATGTTCCAGCAGAAGCTACCCA
CGCGTCAATTTGGCAAGTATCAGTTTACGGAAACACAGCAGATAGCGCCA
GAGGCTTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_012446KJC3_012446Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012446-T1KJC3_012446-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012446-T1.cdsKJC3_012446-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012446-T1.utr3p2KJC3_012446-T1.utr3p2Aspergillus niger KJC3three_prime_UTR
KJC3_012446-T1.utr3p1KJC3_012446-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012446-T1.exon3KJC3_012446-T1.exon3Aspergillus niger KJC3exon
KJC3_012446-T1.exon2KJC3_012446-T1.exon2Aspergillus niger KJC3exon
KJC3_012446-T1.exon1KJC3_012446-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012446-T1.utr5p2KJC3_012446-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_012446-T1.utr5p1KJC3_012446-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036259
DBxrefInterPro:IPR020846
DBxrefInterPro:IPR005829
DBxrefInterPro:IPR003663
DBxrefInterPro:IPR005828
DBxrefPFAM:PF00083
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:3598522..3600726 -
Powered by Drupal